RNA–Protein interactions for RNA: ENST00000596163.5

SHKBP1-212, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 3

Gene SHKBP1, Length 785 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-212ENST00000596163 ADGRA1Q86SQ6 560 aa20.93■□□□□ 0.94
SHKBP1-212ENST00000596163 CSRNP1Q96S65 589 aa20.93■□□□□ 0.94
SHKBP1-212ENST00000596163 WBP1LQ9NX94 342 aa20.93■□□□□ 0.94
SHKBP1-212ENST00000596163 PDE6AP16499 860 aa20.92■□□□□ 0.94
SHKBP1-212ENST00000596163 MX1P20591 662 aa20.92■□□□□ 0.94
SHKBP1-212ENST00000596163 LRRFIP1Q32MZ4 808 aaKnown RBP20.92■□□□□ 0.94
SHKBP1-212ENST00000596163 ZFPM1Q8IX07 1006 aa20.92■□□□□ 0.94
SHKBP1-212ENST00000596163 DDX4Q9NQI0 724 aaKnown RBP20.92■□□□□ 0.94
SHKBP1-212ENST00000596163 IGHDP01880 384 aa20.91■□□□□ 0.94
SHKBP1-212ENST00000596163 RFX7Q2KHR2 1363 aa20.91■□□□□ 0.94
SHKBP1-212ENST00000596163 MIGA2Q7L4E1 593 aa20.91■□□□□ 0.94
SHKBP1-212ENST00000596163 MIGA1Q8NAN2 632 aa20.91■□□□□ 0.94
SHKBP1-212ENST00000596163 DDX55Q8NHQ9 600 aaKnown RBP eCLIP20.91■□□□□ 0.94
SHKBP1-212ENST00000596163 EDC3Q96F86 508 aaKnown RBP20.91■□□□□ 0.94
SHKBP1-212ENST00000596163 OSBPL5Q9H0X9 879 aaPredicted RBP20.91■□□□□ 0.94
SHKBP1-212ENST00000596163 DHX36Q9H2U1 1008 aaKnown RBP20.91■□□□□ 0.94
SHKBP1-212ENST00000596163 ZBTB4Q9P1Z0 1013 aaPredicted RBP20.91■□□□□ 0.94
SHKBP1-212ENST00000596163 ZNF532Q9HCE3 1301 aa20.9■□□□□ 0.94
SHKBP1-212ENST00000596163 MAGEB6P1A0A0J9YX57 407 aa20.9■□□□□ 0.94
SHKBP1-212ENST00000596163 CA12O43570 354 aa20.9■□□□□ 0.94
SHKBP1-212ENST00000596163 ZBTB48P10074 688 aaPredicted RBP20.9■□□□□ 0.94
SHKBP1-212ENST00000596163 DYNLL1P63167 89 aaKnown RBP20.9■□□□□ 0.94
SHKBP1-212ENST00000596163 SPRYD7Q5W111 196 aa20.9■□□□□ 0.94
SHKBP1-212ENST00000596163 TGFBRAP1Q8WUH2 860 aa20.9■□□□□ 0.94
SHKBP1-212ENST00000596163 WRNIP1Q96S55 665 aa20.9■□□□□ 0.94
SHKBP1-212ENST00000596163 DDTLA6NHG4 134 aaPredicted RBP20.89■□□□□ 0.93
SHKBP1-212ENST00000596163 ADD2P35612 726 aa20.89■□□□□ 0.93
SHKBP1-212ENST00000596163 USP5P45974 858 aa20.89■□□□□ 0.93
SHKBP1-212ENST00000596163 UBE3CQ15386 1083 aa20.89■□□□□ 0.93
SHKBP1-212ENST00000596163 B4GALNT3Q6L9W6 998 aa20.89■□□□□ 0.93
SHKBP1-212ENST00000596163 PPP1R3FQ6ZSY5 799 aaPredicted RBP20.89■□□□□ 0.93
SHKBP1-212ENST00000596163 CLMNQ96JQ2 1002 aa20.89■□□□□ 0.93
SHKBP1-212ENST00000596163 ATRNL1Q5VV63 1379 aa20.88■□□□□ 0.93
SHKBP1-212ENST00000596163 MAST2Q6P0Q8 1798 aa20.88■□□□□ 0.93
SHKBP1-212ENST00000596163 TBC1D12O60347 775 aa20.88■□□□□ 0.93
SHKBP1-212ENST00000596163 INHBEP58166 350 aa20.88■□□□□ 0.93
SHKBP1-212ENST00000596163 SREBF2Q12772 1141 aa20.88■□□□□ 0.93
SHKBP1-212ENST00000596163 TSHZ3Q63HK5 1081 aa20.88■□□□□ 0.93
SHKBP1-212ENST00000596163 SH3BP5LQ7L8J4 393 aa20.88■□□□□ 0.93
SHKBP1-212ENST00000596163 CHD1LQ86WJ1 897 aa20.88■□□□□ 0.93
SHKBP1-212ENST00000596163 MAPKAPK5Q8IW41 473 aa20.88■□□□□ 0.93
SHKBP1-212ENST00000596163 KBTBD3Q8NAB2 608 aa20.88■□□□□ 0.93
SHKBP1-212ENST00000596163 OTUD7AQ8TE49 926 aaPredicted RBP20.88■□□□□ 0.93
SHKBP1-212ENST00000596163 WNK4Q96J92 1243 aa20.88■□□□□ 0.93
SHKBP1-212ENST00000596163 ZIC5Q96T25 663 aa20.88■□□□□ 0.93
SHKBP1-212ENST00000596163 CRNKL1Q9BZJ0 848 aaKnown RBP20.88■□□□□ 0.93
SHKBP1-212ENST00000596163 ELP3Q9H9T3 547 aa20.88■□□□□ 0.93
SHKBP1-212ENST00000596163 STAP2Q9UGK3 403 aa20.88■□□□□ 0.93
SHKBP1-212ENST00000596163 ZNF112Q9UJU3 913 aa20.88■□□□□ 0.93
SHKBP1-212ENST00000596163 COL2A1P02458 1487 aaPredicted RBP20.88■□□□□ 0.93
SHKBP1-212ENST00000596163 TCRBV5S4A2TA0A5A2 114 aa20.87■□□□□ 0.93
SHKBP1-212ENST00000596163 CTCFP49711 727 aaPredicted RBP20.87■□□□□ 0.93
SHKBP1-212ENST00000596163 MAP3K10Q02779 954 aa20.87■□□□□ 0.93
SHKBP1-212ENST00000596163 NUCB1Q02818 461 aa20.87■□□□□ 0.93
SHKBP1-212ENST00000596163 VGLL4Q14135 290 aa20.87■□□□□ 0.93
SHKBP1-212ENST00000596163 PI4K2BQ8TCG2 481 aa20.87■□□□□ 0.93
SHKBP1-212ENST00000596163 LNPKQ9C0E8 428 aa20.87■□□□□ 0.93
SHKBP1-212ENST00000596163 PI4KBQ9UBF8 816 aa20.87■□□□□ 0.93
SHKBP1-212ENST00000596163 FLT1P17948 1338 aa20.86■□□□□ 0.93
SHKBP1-212ENST00000596163 MANSC4A6NHS7 340 aaPredicted RBP20.86■□□□□ 0.93
SHKBP1-212ENST00000596163 ZFYP08048 801 aaPredicted RBP20.86■□□□□ 0.93
SHKBP1-212ENST00000596163 MKRN3Q13064 507 aaKnown RBP20.86■□□□□ 0.93
SHKBP1-212ENST00000596163 FOXP4Q8IVH2 680 aaPredicted RBP20.86■□□□□ 0.93
SHKBP1-212ENST00000596163 RIOK1Q9BRS2 568 aaKnown RBP20.86■□□□□ 0.93
SHKBP1-212ENST00000596163 XPO5Q9HAV4 1204 aaKnown RBP eCLIP20.86■□□□□ 0.93
SHKBP1-212ENST00000596163 SALL3Q9BXA9 1300 aa20.85■□□□□ 0.93
SHKBP1-212ENST00000596163 HLA-DOAP06340 250 aa20.85■□□□□ 0.93
SHKBP1-212ENST00000596163 TM4SF4P48230 202 aa20.85■□□□□ 0.93
SHKBP1-212ENST00000596163 PDE1AP54750 535 aa20.85■□□□□ 0.93
SHKBP1-212ENST00000596163 IFFO2Q5TF58 517 aa20.85■□□□□ 0.93
SHKBP1-212ENST00000596163 ERO1BQ86YB8 467 aa20.85■□□□□ 0.93
SHKBP1-212ENST00000596163 ZKSCAN4Q969J2 545 aaPredicted RBP20.85■□□□□ 0.93
SHKBP1-212ENST00000596163 OPTNQ96CV9 577 aa20.85■□□□□ 0.93
SHKBP1-212ENST00000596163 TRIM34Q9BYJ4 488 aa20.85■□□□□ 0.93
SHKBP1-212ENST00000596163 HERC5Q9UII4 1024 aaKnown RBP20.85■□□□□ 0.93
SHKBP1-212ENST00000596163 FOXN1O15353 648 aa20.84■□□□□ 0.93
SHKBP1-212ENST00000596163 NOL9Q5SY16 702 aaKnown RBP20.84■□□□□ 0.93
SHKBP1-212ENST00000596163 THSD7BQ9C0I4 1608 aa20.84■□□□□ 0.93
SHKBP1-212ENST00000596163 SPDYE5A6NIY4 337 aa20.83■□□□□ 0.93
SHKBP1-212ENST00000596163 RNF113AO15541 343 aaKnown RBP20.83■□□□□ 0.93
SHKBP1-212ENST00000596163 INPP5BP32019 993 aa20.83■□□□□ 0.93
SHKBP1-212ENST00000596163 TTC6Q86TZ1 520 aa20.83■□□□□ 0.93
SHKBP1-212ENST00000596163 PICK1Q9NRD5 415 aa20.83■□□□□ 0.93
SHKBP1-212ENST00000596163 SAGE1Q9NXZ1 904 aa20.83■□□□□ 0.93
SHKBP1-212ENST00000596163 SNCAIPQ9Y6H5 919 aa20.83■□□□□ 0.93
SHKBP1-212ENST00000596163 PHF20L1A8MW92 1017 aa20.82■□□□□ 0.92
SHKBP1-212ENST00000596163 CTNND1O60716 968 aaKnown RBP20.82■□□□□ 0.92
SHKBP1-212ENST00000596163 GTF2A2P52657 109 aa20.82■□□□□ 0.92
SHKBP1-212ENST00000596163 PPATQ06203 517 aa20.82■□□□□ 0.92
SHKBP1-212ENST00000596163 OTUD7BQ6GQQ9 843 aa20.82■□□□□ 0.92
SHKBP1-212ENST00000596163 CRACR2BQ8N4Y2 399 aaPredicted RBP20.82■□□□□ 0.92
SHKBP1-212ENST00000596163 EVI5LQ96CN4 794 aa20.82■□□□□ 0.92
SHKBP1-212ENST00000596163 DDRGK1Q96HY6 314 aa20.82■□□□□ 0.92
SHKBP1-212ENST00000596163 FSD1Q9BTV5 496 aa20.82■□□□□ 0.92
SHKBP1-212ENST00000596163 PALD1Q9ULE6 856 aa20.82■□□□□ 0.92
SHKBP1-212ENST00000596163 DOCK2Q92608 1830 aa20.82■□□□□ 0.92
SHKBP1-212ENST00000596163 MBD4O95243 580 aa20.81■□□□□ 0.92
SHKBP1-212ENST00000596163 ALDH1A1P00352 501 aa20.81■□□□□ 0.92
SHKBP1-212ENST00000596163 TICAM2Q86XR7 235 aa20.81■□□□□ 0.92
SHKBP1-212ENST00000596163 SCYL3Q8IZE3 742 aa20.81■□□□□ 0.92
Retrieved 100 of 20,778 RNA–protein pairs in 31.3 ms