RNA–Protein interactions for RNA: ENST00000583821.1

MSI2-218, Transcript of musashi RNA binding protein 2, human

TSL 3

Gene MSI2, Length 548 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
MSI2-218	ENST00000583821	SMC4	Q9NTJ3	1288 aa		10.13	□□□□□ -0.79
MSI2-218	ENST00000583821	PHIP	Q8WWQ0	1821 aa		10.12	□□□□□ -0.79
MSI2-218	ENST00000583821	ATAD5	Q96QE3	1844 aa		10.12	□□□□□ -0.79
MSI2-218	ENST00000583821	CCL15-CCL14	A0A0B4J2E2	113 aa		10.12	□□□□□ -0.79
MSI2-218	ENST00000583821	EYA2	O00167	538 aa		10.12	□□□□□ -0.79
MSI2-218	ENST00000583821	INHBE	P58166	350 aa		10.12	□□□□□ -0.79
MSI2-218	ENST00000583821	DIXDC1	Q155Q3	683 aa		10.12	□□□□□ -0.79
MSI2-218	ENST00000583821	CCL15	Q16663	113 aa		10.12	□□□□□ -0.79
MSI2-218	ENST00000583821	APOBEC3H	Q6NTF7	200 aa	Known RBP	10.12	□□□□□ -0.79
MSI2-218	ENST00000583821	ATG9A	Q7Z3C6	839 aa		10.12	□□□□□ -0.79
MSI2-218	ENST00000583821	DDX55	Q8NHQ9	600 aa	Known RBP eCLIP	10.12	□□□□□ -0.79
MSI2-218	ENST00000583821	TBC1D22A	Q8WUA7	517 aa		10.12	□□□□□ -0.79
MSI2-218	ENST00000583821	ZSWIM6	Q9HCJ5	1215 aa		10.12	□□□□□ -0.79
MSI2-218	ENST00000583821	SNCAIP	Q9Y6H5	919 aa		10.12	□□□□□ -0.79
MSI2-218	ENST00000583821	DOCK1	Q14185	1865 aa		10.12	□□□□□ -0.79
MSI2-218	ENST00000583821	CDK5RAP2	Q96SN8	1893 aa		10.11	□□□□□ -0.79
MSI2-218	ENST00000583821	MYO5A	Q9Y4I1	1855 aa	Known RBP	10.11	□□□□□ -0.79
MSI2-218	ENST00000583821	TESPA1	A2RU30	521 aa	Predicted RBP	10.11	□□□□□ -0.79
MSI2-218	ENST00000583821	UNCX	A6NJT0	531 aa		10.11	□□□□□ -0.79
MSI2-218	ENST00000583821	DPYSL4	O14531	572 aa		10.11	□□□□□ -0.79
MSI2-218	ENST00000583821	TNNI2	P48788	182 aa		10.11	□□□□□ -0.79
MSI2-218	ENST00000583821	MAP3K9	P80192	1104 aa		10.11	□□□□□ -0.79
MSI2-218	ENST00000583821	HDLBP	Q00341	1268 aa	Known RBP	10.11	□□□□□ -0.79
MSI2-218	ENST00000583821	CAMK2B	Q13554	666 aa		10.11	□□□□□ -0.79
MSI2-218	ENST00000583821	FAM43A	Q8N2R8	423 aa		10.11	□□□□□ -0.79
MSI2-218	ENST00000583821	ZKSCAN4	Q969J2	545 aa	Predicted RBP	10.11	□□□□□ -0.79
MSI2-218	ENST00000583821	ZDHHC15	Q96MV8	337 aa		10.11	□□□□□ -0.79
MSI2-218	ENST00000583821	WRNIP1	Q96S55	665 aa		10.11	□□□□□ -0.79
MSI2-218	ENST00000583821	WDR70	Q9NW82	654 aa		10.11	□□□□□ -0.79
MSI2-218	ENST00000583821	LHX6	Q9UPM6	363 aa		10.11	□□□□□ -0.79
MSI2-218	ENST00000583821	PA2G4	Q9UQ80	394 aa	Known RBP	10.11	□□□□□ -0.79
MSI2-218	ENST00000583821	CSAD	Q9Y600	493 aa		10.11	□□□□□ -0.79
MSI2-218	ENST00000583821	KIF16B	Q96L93	1317 aa		10.1	□□□□□ -0.79
MSI2-218	ENST00000583821	SPDYE5	A6NIY4	337 aa		10.1	□□□□□ -0.79
MSI2-218	ENST00000583821	IFIT1	P09914	478 aa	Known RBP	10.1	□□□□□ -0.79
MSI2-218	ENST00000583821	SLC5A1	P13866	664 aa		10.1	□□□□□ -0.79
MSI2-218	ENST00000583821	TAF1C	Q15572	869 aa	Predicted RBP	10.1	□□□□□ -0.79
MSI2-218	ENST00000583821	ATP2B3	Q16720	1220 aa		10.1	□□□□□ -0.79
MSI2-218	ENST00000583821	ALDH1L2	Q3SY69	923 aa		10.1	□□□□□ -0.79
MSI2-218	ENST00000583821	ERO1A	Q96HE7	468 aa		10.1	□□□□□ -0.79
MSI2-218	ENST00000583821	HS3ST6	Q96QI5	342 aa		10.1	□□□□□ -0.79
MSI2-218	ENST00000583821	NOB1	Q9ULX3	412 aa	Known RBP	10.1	□□□□□ -0.79
MSI2-218	ENST00000583821	PTPN22	Q9Y2R2	807 aa		10.1	□□□□□ -0.79
MSI2-218	ENST00000583821	DAGLA	Q9Y4D2	1042 aa		10.1	□□□□□ -0.79
MSI2-218	ENST00000583821	LRRFIP2	Q9Y608	721 aa	Known RBP	10.1	□□□□□ -0.79
MSI2-218	ENST00000583821	RPAP1	Q9BWH6	1393 aa	Predicted RBP	10.1	□□□□□ -0.79
MSI2-218	ENST00000583821	MAST3	O60307	1309 aa		10.09	□□□□□ -0.79
MSI2-218	ENST00000583821	MAST2	Q6P0Q8	1798 aa		10.09	□□□□□ -0.79
MSI2-218	ENST00000583821	UBTFL1	P0CB47	393 aa	Predicted RBP	10.09	□□□□□ -0.79
MSI2-218	ENST00000583821	PRDX5	P30044	214 aa		10.09	□□□□□ -0.79
MSI2-218	ENST00000583821	ADORA1	P30542	326 aa		10.09	□□□□□ -0.79
MSI2-218	ENST00000583821	INPP5B	P32019	993 aa		10.09	□□□□□ -0.79
MSI2-218	ENST00000583821	PHKA1	P46020	1223 aa		10.09	□□□□□ -0.79
MSI2-218	ENST00000583821	GTF2A2	P52657	109 aa		10.09	□□□□□ -0.79
MSI2-218	ENST00000583821	SP3	Q02447	781 aa		10.09	□□□□□ -0.79
MSI2-218	ENST00000583821	TCP10	Q12799	353 aa		10.09	□□□□□ -0.79
MSI2-218	ENST00000583821	NFIA	Q12857	509 aa		10.09	□□□□□ -0.79
MSI2-218	ENST00000583821	VARS2	Q5ST30	1063 aa	Known RBP	10.09	□□□□□ -0.79
MSI2-218	ENST00000583821	PRPF38B	Q5VTL8	546 aa	Known RBP	10.09	□□□□□ -0.79
MSI2-218	ENST00000583821	OTUD7B	Q6GQQ9	843 aa		10.09	□□□□□ -0.79
MSI2-218	ENST00000583821	MIGA2	Q7L4E1	593 aa		10.09	□□□□□ -0.79
MSI2-218	ENST00000583821	TRMT2A	Q8IZ69	625 aa	Known RBP	10.09	□□□□□ -0.79
MSI2-218	ENST00000583821	LPIN2	Q92539	896 aa		10.09	□□□□□ -0.79
MSI2-218	ENST00000583821	ARHGAP39	Q9C0H5	1083 aa		10.09	□□□□□ -0.79
MSI2-218	ENST00000583821	EFCC1	Q9HA90	598 aa		10.09	□□□□□ -0.79
MSI2-218	ENST00000583821	TMOD2	Q9NZR1	351 aa		10.09	□□□□□ -0.79
MSI2-218	ENST00000583821	RANBP2	P49792	3224 aa	Known RBP	10.08	□□□□□ -0.8
MSI2-218	ENST00000583821	SIPA1L1	O43166	1804 aa		10.08	□□□□□ -0.8
MSI2-218	ENST00000583821	E2F4	Q16254	413 aa		10.08	□□□□□ -0.8
MSI2-218	ENST00000583821	CDC42EP5	Q6NZY7	148 aa		10.08	□□□□□ -0.8
MSI2-218	ENST00000583821	HHIPL2	Q6UWX4	724 aa		10.08	□□□□□ -0.8
MSI2-218	ENST00000583821	FAM83A	Q86UY5	434 aa		10.08	□□□□□ -0.8
MSI2-218	ENST00000583821	MEIS3	Q99687	375 aa		10.08	□□□□□ -0.8
MSI2-218	ENST00000583821	TNN	Q9UQP3	1299 aa		10.08	□□□□□ -0.8
MSI2-218	ENST00000583821	PTCH2	Q9Y6C5	1203 aa		10.08	□□□□□ -0.8
MSI2-218	ENST00000583821	TRIOBP	Q9H2D6	2365 aa		10.07	□□□□□ -0.8
MSI2-218	ENST00000583821	RFX7	Q2KHR2	1363 aa		10.07	□□□□□ -0.8
MSI2-218	ENST00000583821	BTBD19	C9JJ37	291 aa		10.07	□□□□□ -0.8
MSI2-218	ENST00000583821	IRF6	O14896	467 aa		10.07	□□□□□ -0.8
MSI2-218	ENST00000583821	CIAO1	O76071	339 aa		10.07	□□□□□ -0.8
MSI2-218	ENST00000583821	MYC	P01106	439 aa	Predicted RBP	10.07	□□□□□ -0.8
MSI2-218	ENST00000583821	SLURP2	P0DP57	97 aa		10.07	□□□□□ -0.8
MSI2-218	ENST00000583821	PPIL2	Q13356	520 aa		10.07	□□□□□ -0.8
MSI2-218	ENST00000583821	FKBP1C	Q5VVH2	108 aa		10.07	□□□□□ -0.8
MSI2-218	ENST00000583821	ERO1B	Q86YB8	467 aa		10.07	□□□□□ -0.8
MSI2-218	ENST00000583821	ZFPM1	Q8IX07	1006 aa		10.07	□□□□□ -0.8
MSI2-218	ENST00000583821	WDR66	Q8TBY9	1149 aa		10.07	□□□□□ -0.8
MSI2-218	ENST00000583821	ARMC5	Q96C12	935 aa		10.07	□□□□□ -0.8
MSI2-218	ENST00000583821	ZFYVE28	Q9HCC9	887 aa		10.07	□□□□□ -0.8
MSI2-218	ENST00000583821	FAM198A	Q9UFP1	575 aa		10.07	□□□□□ -0.8
MSI2-218	ENST00000583821	SUGT1	Q9Y2Z0	365 aa		10.07	□□□□□ -0.8
MSI2-218	ENST00000583821	FOCAD	Q5VW36	1801 aa		10.07	□□□□□ -0.8
MSI2-218	ENST00000583821	ATRNL1	Q5VV63	1379 aa		10.06	□□□□□ -0.8
MSI2-218	ENST00000583821	LDHB	P07195	334 aa	Known RBP	10.06	□□□□□ -0.8
MSI2-218	ENST00000583821	CETP	P11597	493 aa		10.06	□□□□□ -0.8
MSI2-218	ENST00000583821	EN2	P19622	333 aa	Predicted RBP	10.06	□□□□□ -0.8
MSI2-218	ENST00000583821	SNAPC2	Q13487	334 aa		10.06	□□□□□ -0.8
MSI2-218	ENST00000583821	DCAF15	Q66K64	600 aa		10.06	□□□□□ -0.8
MSI2-218	ENST00000583821	GOLGA6L2	Q8N9W4	650 aa	Predicted RBP	10.06	□□□□□ -0.8
MSI2-218	ENST00000583821	KCNV2	Q8TDN2	545 aa		10.06	□□□□□ -0.8

Retrieved 100 of 20,778 RNA–protein pairs in 35.3 ms