RNA–Protein interactions for RNA: ENST00000582092.1

SS18-220, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 1 (best)

Gene SS18, Length 215 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-220ENST00000582092 AMOTL1Q8IY63 956 aa10.93□□□□□ -0.66
SS18-220ENST00000582092 IFNL3Q8IZI9 196 aa10.93□□□□□ -0.66
SS18-220ENST00000582092 ZC3H15Q8WU90 426 aaKnown RBP10.93□□□□□ -0.66
SS18-220ENST00000582092 BRF1Q92994 677 aa10.93□□□□□ -0.66
SS18-220ENST00000582092 KRT23Q9C075 422 aa10.93□□□□□ -0.66
SS18-220ENST00000582092 RNF41Q9H4P4 317 aaPredicted RBP10.93□□□□□ -0.66
SS18-220ENST00000582092 CREBZFQ9NS37 354 aa10.93□□□□□ -0.66
SS18-220ENST00000582092 TPCN1Q9ULQ1 816 aa10.93□□□□□ -0.66
SS18-220ENST00000582092 POLR2AP24928 1970 aaKnown RBP10.93□□□□□ -0.66
SS18-220ENST00000582092 MYH7P12883 1935 aa10.93□□□□□ -0.66
SS18-220ENST00000582092 ADAMTSL1Q8N6G6 1762 aa10.93□□□□□ -0.66
SS18-220ENST00000582092 TCRBV5S4A2TA0A5A2 114 aa10.92□□□□□ -0.66
SS18-220ENST00000582092 PRC1O43663 620 aa10.92□□□□□ -0.66
SS18-220ENST00000582092 TRAK2O60296 914 aa10.92□□□□□ -0.66
SS18-220ENST00000582092 LDHBP07195 334 aaKnown RBP10.92□□□□□ -0.66
SS18-220ENST00000582092 SLC3A2P08195 630 aaKnown RBP10.92□□□□□ -0.66
SS18-220ENST00000582092 POTEIP0CG38 1075 aa10.92□□□□□ -0.66
SS18-220ENST00000582092 POTEJP0CG39 1038 aa10.92□□□□□ -0.66
SS18-220ENST00000582092 MMP14P50281 582 aa10.92□□□□□ -0.66
SS18-220ENST00000582092 GSE1Q14687 1217 aa10.92□□□□□ -0.66
SS18-220ENST00000582092 NFXL1Q6ZNB6 911 aa10.92□□□□□ -0.66
SS18-220ENST00000582092 SLF2Q8IX21 1173 aa10.92□□□□□ -0.66
SS18-220ENST00000582092 NECAB1Q8N987 351 aa10.92□□□□□ -0.66
SS18-220ENST00000582092 MIGA1Q8NAN2 632 aa10.92□□□□□ -0.66
SS18-220ENST00000582092 AGBL3Q8NEM8 1001 aa10.92□□□□□ -0.66
SS18-220ENST00000582092 KLRG1Q96E93 195 aa10.92□□□□□ -0.66
SS18-220ENST00000582092 CRNKL1Q9BZJ0 848 aaKnown RBP10.92□□□□□ -0.66
SS18-220ENST00000582092 COA1Q9GZY4 146 aa10.92□□□□□ -0.66
SS18-220ENST00000582092 SCN9AQ15858 1988 aa10.92□□□□□ -0.66
SS18-220ENST00000582092 COL4A1P02462 1669 aa10.92□□□□□ -0.66
SS18-220ENST00000582092 AKAP11Q9UKA4 1901 aa10.92□□□□□ -0.66
SS18-220ENST00000582092 MYO3BQ8WXR4 1341 aa10.91□□□□□ -0.66
SS18-220ENST00000582092 VPS37CA5D8V6 355 aaPredicted RBP10.91□□□□□ -0.66
SS18-220ENST00000582092 USP17L3A6NCW0 530 aa10.91□□□□□ -0.66
SS18-220ENST00000582092 USP17L4A6NCW7 530 aa10.91□□□□□ -0.66
SS18-220ENST00000582092 TMEM88BA6NKF7 163 aa10.91□□□□□ -0.66
SS18-220ENST00000582092 H3BQV1 296 aa10.91□□□□□ -0.66
SS18-220ENST00000582092 STX6O43752 255 aa10.91□□□□□ -0.66
SS18-220ENST00000582092 BAG3O95817 575 aa10.91□□□□□ -0.66
SS18-220ENST00000582092 VIL1P09327 827 aaKnown RBP10.91□□□□□ -0.66
SS18-220ENST00000582092 HMGN5P82970 282 aaKnown RBP10.91□□□□□ -0.66
SS18-220ENST00000582092 EXOSC10Q01780 885 aaKnown RBP10.91□□□□□ -0.66
SS18-220ENST00000582092 TOB2Q14106 344 aaPredicted RBP10.91□□□□□ -0.66
SS18-220ENST00000582092 IFFO2Q5TF58 517 aa10.91□□□□□ -0.66
SS18-220ENST00000582092 MAP1SQ66K74 1059 aaPredicted RBP10.91□□□□□ -0.66
SS18-220ENST00000582092 CPLX2Q6PUV4 134 aaKnown RBP10.91□□□□□ -0.66
SS18-220ENST00000582092 USP17L1Q7RTZ2 530 aa10.91□□□□□ -0.66
SS18-220ENST00000582092 MICALL2Q8IY33 904 aa10.91□□□□□ -0.66
SS18-220ENST00000582092 ZNF274Q96GC6 653 aaPredicted RBP10.91□□□□□ -0.66
SS18-220ENST00000582092 GPR101Q96P66 508 aaPredicted RBP10.91□□□□□ -0.66
SS18-220ENST00000582092 LLPHQ9BRT6 129 aaKnown RBP10.91□□□□□ -0.66
SS18-220ENST00000582092 LRRC2Q9BYS8 371 aa10.91□□□□□ -0.66
SS18-220ENST00000582092 ZMYM6O95789 1325 aa10.9□□□□□ -0.66
SS18-220ENST00000582092 WDR19Q8NEZ3 1342 aa10.9□□□□□ -0.66
SS18-220ENST00000582092 PASKQ96RG2 1323 aa10.9□□□□□ -0.66
SS18-220ENST00000582092 MINDY4BA8MYZ0 360 aa10.9□□□□□ -0.66
SS18-220ENST00000582092 CPLX1O14810 134 aa10.9□□□□□ -0.66
SS18-220ENST00000582092 BRD1O95696 1058 aa10.9□□□□□ -0.66
SS18-220ENST00000582092 ITGBL1O95965 494 aaPredicted RBP10.9□□□□□ -0.66
SS18-220ENST00000582092 APOBRQ0VD83 1088 aa10.9□□□□□ -0.66
SS18-220ENST00000582092 RRP12Q5JTH9 1297 aaKnown RBP10.9□□□□□ -0.66
SS18-220ENST00000582092 RSBN1LQ6PCB5 846 aaPredicted RBP10.9□□□□□ -0.66
SS18-220ENST00000582092 CLEC17AQ6ZS10 378 aa10.9□□□□□ -0.66
SS18-220ENST00000582092 C15orf52Q6ZUT6 534 aaKnown RBP10.9□□□□□ -0.66
SS18-220ENST00000582092 STOX1Q6ZVD7 989 aa10.9□□□□□ -0.66
SS18-220ENST00000582092 CDC37L1Q7L3B6 337 aa10.9□□□□□ -0.66
SS18-220ENST00000582092 CERS3Q8IU89 383 aa10.9□□□□□ -0.66
SS18-220ENST00000582092 OGFOD1Q8N543 542 aa10.9□□□□□ -0.66
SS18-220ENST00000582092 DNAJC5GQ8N7S2 189 aa10.9□□□□□ -0.66
SS18-220ENST00000582092 FBXW7Q969H0 707 aa10.9□□□□□ -0.66
SS18-220ENST00000582092 TMEM87BQ96K49 555 aa10.9□□□□□ -0.66
SS18-220ENST00000582092 ZBTB12Q9Y330 459 aaPredicted RBP10.9□□□□□ -0.66
SS18-220ENST00000582092 TAF6LQ9Y6J9 622 aa10.9□□□□□ -0.66
SS18-220ENST00000582092 DDX49Q9Y6V7 483 aaKnown RBP10.9□□□□□ -0.66
SS18-220ENST00000582092 A0A1B0GUL6 1792 aa10.9□□□□□ -0.67
SS18-220ENST00000582092 CCDC69A6NI79 296 aa10.89□□□□□ -0.67
SS18-220ENST00000582092 GSG1L2A8MUP6 293 aa10.89□□□□□ -0.67
SS18-220ENST00000582092 PFKFB2O60825 505 aa10.89□□□□□ -0.67
SS18-220ENST00000582092 LARGE1O95461 756 aa10.89□□□□□ -0.67
SS18-220ENST00000582092 ZSCAN22P10073 491 aaPredicted RBP10.89□□□□□ -0.67
SS18-220ENST00000582092 SYT1P21579 422 aa10.89□□□□□ -0.67
SS18-220ENST00000582092 DEKP35659 375 aaKnown RBP10.89□□□□□ -0.67
SS18-220ENST00000582092 USP5P45974 858 aa10.89□□□□□ -0.67
SS18-220ENST00000582092 MECOMQ03112 1051 aa10.89□□□□□ -0.67
SS18-220ENST00000582092 AKNAD1Q5T1N1 836 aa10.89□□□□□ -0.67
SS18-220ENST00000582092 STRIP1Q5VSL9 837 aa10.89□□□□□ -0.67
SS18-220ENST00000582092 CHST3Q7LGC8 479 aa10.89□□□□□ -0.67
SS18-220ENST00000582092 LCORLQ8N3X6 602 aa10.89□□□□□ -0.67
SS18-220ENST00000582092 TDRD7Q8NHU6 1098 aaKnown RBP10.89□□□□□ -0.67
SS18-220ENST00000582092 TBC1D22AQ8WUA7 517 aa10.89□□□□□ -0.67
SS18-220ENST00000582092 GTF3C6Q969F1 213 aa10.89□□□□□ -0.67
SS18-220ENST00000582092 DCPSQ96C86 337 aaKnown RBP10.89□□□□□ -0.67
SS18-220ENST00000582092 HDAC9Q9UKV0 1011 aa10.89□□□□□ -0.67
SS18-220ENST00000582092 KLF18A0A0U1RQI7 1052 aa10.88□□□□□ -0.67
SS18-220ENST00000582092 WTIPA6NIX2 430 aaPredicted RBP10.88□□□□□ -0.67
SS18-220ENST00000582092 IFIT3O14879 490 aaKnown RBP10.88□□□□□ -0.67
SS18-220ENST00000582092 PRKAB2O43741 272 aa10.88□□□□□ -0.67
SS18-220ENST00000582092 PRPF40AO75400 957 aaKnown RBP10.88□□□□□ -0.67
SS18-220ENST00000582092 CDKL5O76039 1030 aa10.88□□□□□ -0.67
SS18-220ENST00000582092 USP17L8P0C7I0 530 aa10.88□□□□□ -0.67
Retrieved 100 of 20,778 RNA–protein pairs in 14.6 ms