RNA–Protein interactions for RNA: ENST00000568488.5

CLK3-223, Transcript of CDC like kinase 3, humanhuman

TSL 3

Gene CLK3, Length 481 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-223ENST00000568488 C11orf49Q9H6J7 331 aa20.38■□□□□ 0.85
CLK3-223ENST00000568488 USP40Q9NVE5 1235 aa20.38■□□□□ 0.85
CLK3-223ENST00000568488 DAGLAQ9Y4D2 1042 aa20.38■□□□□ 0.85
CLK3-223ENST00000568488 DIXDC1Q155Q3 683 aa20.37■□□□□ 0.85
CLK3-223ENST00000568488 ZFPM1Q8IX07 1006 aa20.37■□□□□ 0.85
CLK3-223ENST00000568488 SCYL3Q8IZE3 742 aa20.37■□□□□ 0.85
CLK3-223ENST00000568488 FAM198AQ9UFP1 575 aa20.37■□□□□ 0.85
CLK3-223ENST00000568488 AFG3L2Q9Y4W6 797 aa20.37■□□□□ 0.85
CLK3-223ENST00000568488 PTPRAP18433 802 aa20.36■□□□□ 0.85
CLK3-223ENST00000568488 WDR66Q8TBY9 1149 aa20.36■□□□□ 0.85
CLK3-223ENST00000568488 PRKRIP1Q9H875 184 aaPredicted RBP20.36■□□□□ 0.85
CLK3-223ENST00000568488 HMX1Q9NP08 348 aaPredicted RBP20.36■□□□□ 0.85
CLK3-223ENST00000568488 SPINK5Q9NQ38 1064 aaPredicted RBP20.36■□□□□ 0.85
CLK3-223ENST00000568488 SLC45A1Q9Y2W3 748 aa20.36■□□□□ 0.85
CLK3-223ENST00000568488 TRIM75PA6NK02 468 aa20.35■□□□□ 0.85
CLK3-223ENST00000568488 ALDH1L1O75891 902 aa20.35■□□□□ 0.85
CLK3-223ENST00000568488 IFIT1P09914 478 aaKnown RBP20.35■□□□□ 0.85
CLK3-223ENST00000568488 CCDC27Q2M243 656 aa20.35■□□□□ 0.85
CLK3-223ENST00000568488 KAZALD1Q96I82 304 aa20.35■□□□□ 0.85
CLK3-223ENST00000568488 SRCIN1Q9C0H9 1055 aa20.35■□□□□ 0.85
CLK3-223ENST00000568488 LRRFIP2Q9Y608 721 aaKnown RBP20.35■□□□□ 0.85
CLK3-223ENST00000568488 FANCIQ9NVI1 1328 aa20.34■□□□□ 0.85
CLK3-223ENST00000568488 PHF20L1A8MW92 1017 aa20.34■□□□□ 0.85
CLK3-223ENST00000568488 HMGCRP04035 888 aa20.34■□□□□ 0.85
CLK3-223ENST00000568488 BICC1Q9H694 974 aaKnown RBP20.34■□□□□ 0.85
CLK3-223ENST00000568488 IL16Q14005 1332 aa20.33■□□□□ 0.85
CLK3-223ENST00000568488 RPTORQ8N122 1335 aa20.33■□□□□ 0.85
CLK3-223ENST00000568488 EXOSC9Q06265 439 aaKnown RBP20.33■□□□□ 0.85
CLK3-223ENST00000568488 TRIM32Q13049 653 aa20.33■□□□□ 0.85
CLK3-223ENST00000568488 ZSCAN29Q8IWY8 852 aaPredicted RBP20.33■□□□□ 0.85
CLK3-223ENST00000568488 VGLL2Q8N8G2 317 aa20.33■□□□□ 0.85
CLK3-223ENST00000568488 NBPF7P0C2Y1 421 aaPredicted RBP20.32■□□□□ 0.84
CLK3-223ENST00000568488 KLHDC4Q8TBB5 520 aa20.32■□□□□ 0.84
CLK3-223ENST00000568488 FAM161BQ96MY7 647 aa20.32■□□□□ 0.84
CLK3-223ENST00000568488 AGTPBP1Q9UPW5 1226 aa20.32■□□□□ 0.84
CLK3-223ENST00000568488 CACNA1FO60840 1977 aa20.32■□□□□ 0.84
CLK3-223ENST00000568488 RGS3P49796 1198 aa20.31■□□□□ 0.84
CLK3-223ENST00000568488 PUM3Q15397 648 aaKnown RBP20.31■□□□□ 0.84
CLK3-223ENST00000568488 FAM110CQ1W6H9 321 aa20.31■□□□□ 0.84
CLK3-223ENST00000568488 CCDC84Q86UT8 332 aaPredicted RBP20.31■□□□□ 0.84
CLK3-223ENST00000568488 PNMA3Q9UL41 463 aa20.31■□□□□ 0.84
CLK3-223ENST00000568488 DOCK3Q8IZD9 2030 aa20.31■□□□□ 0.84
CLK3-223ENST00000568488 LDHBP07195 334 aaKnown RBP20.3■□□□□ 0.84
CLK3-223ENST00000568488 SLURP2P0DP57 97 aa20.3■□□□□ 0.84
CLK3-223ENST00000568488 PRDX5P30044 214 aa20.3■□□□□ 0.84
CLK3-223ENST00000568488 MDM2Q00987 491 aaPredicted RBP20.3■□□□□ 0.84
CLK3-223ENST00000568488 TREML2Q5T2D2 321 aa20.3■□□□□ 0.84
CLK3-223ENST00000568488 FRMD4AQ9P2Q2 1039 aaPredicted RBP20.3■□□□□ 0.84
CLK3-223ENST00000568488 CTNND1O60716 968 aaKnown RBP20.29■□□□□ 0.84
CLK3-223ENST00000568488 SLC5A1P13866 664 aa20.29■□□□□ 0.84
CLK3-223ENST00000568488 OGDHLQ9ULD0 1010 aa20.29■□□□□ 0.84
CLK3-223ENST00000568488 SALL2Q9Y467 1007 aaPredicted RBP20.29■□□□□ 0.84
CLK3-223ENST00000568488 FGFR2P21802 821 aa20.28■□□□□ 0.84
CLK3-223ENST00000568488 GUCD1Q96NT3 240 aa20.28■□□□□ 0.84
CLK3-223ENST00000568488 GJD2Q9UKL4 321 aa20.28■□□□□ 0.84
CLK3-223ENST00000568488 KIF16BQ96L93 1317 aa20.27■□□□□ 0.84
CLK3-223ENST00000568488 ATRNL1Q5VV63 1379 aa20.27■□□□□ 0.84
CLK3-223ENST00000568488 ENTPD3O75355 529 aa20.27■□□□□ 0.84
CLK3-223ENST00000568488 CYP2B6P20813 491 aa20.27■□□□□ 0.84
CLK3-223ENST00000568488 RABL6Q3YEC7 729 aaPredicted RBP20.27■□□□□ 0.84
CLK3-223ENST00000568488 SH3BP5LQ7L8J4 393 aa20.27■□□□□ 0.84
CLK3-223ENST00000568488 ANKRD44Q8N8A2 993 aa20.27■□□□□ 0.84
CLK3-223ENST00000568488 DDX60LQ5H9U9 1706 aaKnown RBP20.27■□□□□ 0.83
CLK3-223ENST00000568488 PFASO15067 1338 aa20.27■□□□□ 0.83
CLK3-223ENST00000568488 POTEB2H3BUK9 544 aa20.26■□□□□ 0.83
CLK3-223ENST00000568488 GCLCP48506 637 aaPredicted RBP20.26■□□□□ 0.83
CLK3-223ENST00000568488 LPIN2Q92539 896 aa20.26■□□□□ 0.83
CLK3-223ENST00000568488 DDTLA6NHG4 134 aaPredicted RBP20.25■□□□□ 0.83
CLK3-223ENST00000568488 MAP3K10Q02779 954 aa20.25■□□□□ 0.83
CLK3-223ENST00000568488 PICALMQ13492 652 aa20.25■□□□□ 0.83
CLK3-223ENST00000568488 TRIB2Q92519 343 aa20.25■□□□□ 0.83
CLK3-223ENST00000568488 IDI2Q9BXS1 227 aa20.25■□□□□ 0.83
CLK3-223ENST00000568488 PRKAR2AP13861 404 aaKnown RBP20.24■□□□□ 0.83
CLK3-223ENST00000568488 SPP2Q13103 211 aa20.24■□□□□ 0.83
CLK3-223ENST00000568488 PABPC4Q13310 644 aaKnown RBP eCLIP20.24■□□□□ 0.83
CLK3-223ENST00000568488 FAM109BQ6ICB4 259 aaPredicted RBP20.24■□□□□ 0.83
CLK3-223ENST00000568488 PROCA1Q8NCQ7 364 aaPredicted RBP20.24■□□□□ 0.83
CLK3-223ENST00000568488 GNL3LQ9NVN8 582 aaKnown RBP20.24■□□□□ 0.83
CLK3-223ENST00000568488 UTYO14607 1347 aa20.24■□□□□ 0.83
CLK3-223ENST00000568488 LRRC26Q2I0M4 334 aa20.23■□□□□ 0.83
CLK3-223ENST00000568488 LBHD1Q9BQE6 289 aaPredicted RBP20.23■□□□□ 0.83
CLK3-223ENST00000568488 ASCC2Q9H1I8 757 aaPredicted RBP20.23■□□□□ 0.83
CLK3-223ENST00000568488 HMGCS2P54868 508 aa20.22■□□□□ 0.83
CLK3-223ENST00000568488 ZNF697Q5TEC3 545 aa20.22■□□□□ 0.83
CLK3-223ENST00000568488 PRDM6Q9NQX0 595 aa20.22■□□□□ 0.83
CLK3-223ENST00000568488 DOCK2Q92608 1830 aa20.22■□□□□ 0.83
CLK3-223ENST00000568488 PTPRFP10586 1907 aa20.21■□□□□ 0.83
CLK3-223ENST00000568488 MYH13Q9UKX3 1938 aa20.21■□□□□ 0.83
CLK3-223ENST00000568488 VCANP13611 3396 aa20.21■□□□□ 0.83
CLK3-223ENST00000568488 FAM196BA6NMK8 535 aa20.21■□□□□ 0.83
CLK3-223ENST00000568488 EYA2O00167 538 aa20.21■□□□□ 0.83
CLK3-223ENST00000568488 WDR63Q8IWG1 891 aa20.21■□□□□ 0.83
CLK3-223ENST00000568488 ZNF280CQ8ND82 737 aa20.21■□□□□ 0.83
CLK3-223ENST00000568488 XPO5Q9HAV4 1204 aaKnown RBP eCLIP20.21■□□□□ 0.83
CLK3-223ENST00000568488 DDX4Q9NQI0 724 aaKnown RBP20.21■□□□□ 0.83
CLK3-223ENST00000568488 COL6A1P12109 1028 aa20.2■□□□□ 0.82
CLK3-223ENST00000568488 CCDC184Q52MB2 194 aa20.2■□□□□ 0.82
CLK3-223ENST00000568488 MAP3K21Q5TCX8 1036 aa20.2■□□□□ 0.82
CLK3-223ENST00000568488 DZIP1Q86YF9 867 aaKnown RBP20.2■□□□□ 0.82
CLK3-223ENST00000568488 NUDT12Q9BQG2 462 aa20.2■□□□□ 0.82
Retrieved 100 of 20,778 RNA–protein pairs in 90.4 ms