RNA–Protein interactions for RNA: ENST00000565228.1

VPS35-206, Transcript of VPS35, retromer complex component, humanhuman

TSL 3

Gene VPS35, Length 487 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-206ENST00000565228 HUNKP57058 714 aa11.22□□□□□ -0.61
VPS35-206ENST00000565228 JAG1P78504 1218 aa11.22□□□□□ -0.61
VPS35-206ENST00000565228 PICALMQ13492 652 aa11.22□□□□□ -0.61
VPS35-206ENST00000565228 MAP3K11Q16584 847 aa11.22□□□□□ -0.61
VPS35-206ENST00000565228 DEFB115Q30KQ5 88 aa11.22□□□□□ -0.61
VPS35-206ENST00000565228 FKBP1CQ5VVH2 108 aa11.22□□□□□ -0.61
VPS35-206ENST00000565228 MIGA2Q7L4E1 593 aa11.22□□□□□ -0.61
VPS35-206ENST00000565228 FAM83AQ86UY5 434 aa11.22□□□□□ -0.61
VPS35-206ENST00000565228 LCORLQ8N3X6 602 aa11.22□□□□□ -0.61
VPS35-206ENST00000565228 FAM151AQ8WW52 585 aa11.22□□□□□ -0.61
VPS35-206ENST00000565228 PUS7LQ9H0K6 701 aaKnown RBP11.22□□□□□ -0.61
VPS35-206ENST00000565228 FRMD4AQ9P2Q2 1039 aaPredicted RBP11.22□□□□□ -0.61
VPS35-206ENST00000565228 BAZ2AQ9UIF9 1905 aaKnown RBP11.22□□□□□ -0.61
VPS35-206ENST00000565228 RPAP1Q9BWH6 1393 aaPredicted RBP11.21□□□□□ -0.61
VPS35-206ENST00000565228 TTC41PQ6P2S7 1318 aa11.21□□□□□ -0.61
VPS35-206ENST00000565228 WDR33Q9C0J8 1336 aaKnown RBP11.21□□□□□ -0.61
VPS35-206ENST00000565228 FAM196BA6NMK8 535 aa11.21□□□□□ -0.61
VPS35-206ENST00000565228 MYO1BO43795 1136 aa11.21□□□□□ -0.61
VPS35-206ENST00000565228 HSPA1AP0DMV8 641 aaKnown RBP11.21□□□□□ -0.61
VPS35-206ENST00000565228 HSPA1BP0DMV9 641 aaKnown RBP11.21□□□□□ -0.61
VPS35-206ENST00000565228 SHROOM1Q2M3G4 852 aaPredicted RBP11.21□□□□□ -0.61
VPS35-206ENST00000565228 SLC9C2Q5TAH2 1124 aa11.21□□□□□ -0.61
VPS35-206ENST00000565228 PPP1R3FQ6ZSY5 799 aaPredicted RBP11.21□□□□□ -0.61
VPS35-206ENST00000565228 RASAL3Q86YV0 1011 aa11.21□□□□□ -0.61
VPS35-206ENST00000565228 OSBP2Q969R2 916 aa11.21□□□□□ -0.61
VPS35-206ENST00000565228 CAPNS2Q96L46 248 aa11.21□□□□□ -0.61
VPS35-206ENST00000565228 SEC62Q99442 399 aaKnown RBP11.21□□□□□ -0.61
VPS35-206ENST00000565228 DNAJC18Q9H819 358 aa11.21□□□□□ -0.61
VPS35-206ENST00000565228 ANGEL1Q9UNK9 670 aaKnown RBP11.21□□□□□ -0.61
VPS35-206ENST00000565228 PPP2R3BQ9Y5P8 575 aa11.21□□□□□ -0.61
VPS35-206ENST00000565228 PHIPQ8WWQ0 1821 aa11.21□□□□□ -0.62
VPS35-206ENST00000565228 FLT1P17948 1338 aa11.2□□□□□ -0.62
VPS35-206ENST00000565228 PHF20L1A8MW92 1017 aa11.2□□□□□ -0.62
VPS35-206ENST00000565228 M0R2C6 588 aa11.2□□□□□ -0.62
VPS35-206ENST00000565228 FOXP2O15409 715 aa11.2□□□□□ -0.62
VPS35-206ENST00000565228 INPP5BP32019 993 aa11.2□□□□□ -0.62
VPS35-206ENST00000565228 MAP3K10Q02779 954 aa11.2□□□□□ -0.62
VPS35-206ENST00000565228 SLC4A8Q2Y0W8 1093 aa11.2□□□□□ -0.62
VPS35-206ENST00000565228 RGMBQ6NW40 437 aa11.2□□□□□ -0.62
VPS35-206ENST00000565228 MAPKAPK5Q8IW41 473 aa11.2□□□□□ -0.62
VPS35-206ENST00000565228 TEX11Q8IYF3 940 aa11.2□□□□□ -0.62
VPS35-206ENST00000565228 KBTBD3Q8NAB2 608 aa11.2□□□□□ -0.62
VPS35-206ENST00000565228 DDX55Q8NHQ9 600 aaKnown RBP eCLIP11.2□□□□□ -0.62
VPS35-206ENST00000565228 TGFBRAP1Q8WUH2 860 aa11.2□□□□□ -0.62
VPS35-206ENST00000565228 OSBPL5Q9H0X9 879 aaPredicted RBP11.2□□□□□ -0.62
VPS35-206ENST00000565228 ARMT1Q9H993 441 aa11.2□□□□□ -0.62
VPS35-206ENST00000565228 NAV1Q8NEY1 1877 aa11.2□□□□□ -0.62
VPS35-206ENST00000565228 LAMB1P07942 1786 aa11.2□□□□□ -0.62
VPS35-206ENST00000565228 ENTPD3O75355 529 aa11.19□□□□□ -0.62
VPS35-206ENST00000565228 LDHCP07864 332 aa11.19□□□□□ -0.62
VPS35-206ENST00000565228 SLC10A3P09131 477 aa11.19□□□□□ -0.62
VPS35-206ENST00000565228 CYP2D6P10635 497 aa11.19□□□□□ -0.62
VPS35-206ENST00000565228 GSPT1P15170 499 aaKnown RBP11.19□□□□□ -0.62
VPS35-206ENST00000565228 GSTO1P78417 241 aa11.19□□□□□ -0.62
VPS35-206ENST00000565228 MAP3K12Q12852 859 aa11.19□□□□□ -0.62
VPS35-206ENST00000565228 GRM1Q13255 1194 aa11.19□□□□□ -0.62
VPS35-206ENST00000565228 C2orf69Q8N8R5 385 aa11.19□□□□□ -0.62
VPS35-206ENST00000565228 SDR42E1Q8WUS8 393 aa11.19□□□□□ -0.62
VPS35-206ENST00000565228 HHIPL1Q96JK4 782 aa11.19□□□□□ -0.62
VPS35-206ENST00000565228 IL25Q9H293 177 aa11.19□□□□□ -0.62
VPS35-206ENST00000565228 OSBPL3Q9H4L5 887 aa11.19□□□□□ -0.62
VPS35-206ENST00000565228 ZNF112Q9UJU3 913 aa11.19□□□□□ -0.62
VPS35-206ENST00000565228 SNCAIPQ9Y6H5 919 aa11.19□□□□□ -0.62
VPS35-206ENST00000565228 GLRX3O76003 335 aaKnown RBP11.18□□□□□ -0.62
VPS35-206ENST00000565228 MBD4O95243 580 aa11.18□□□□□ -0.62
VPS35-206ENST00000565228 FKBP1BP68106 108 aa11.18□□□□□ -0.62
VPS35-206ENST00000565228 MKRN3Q13064 507 aaKnown RBP11.18□□□□□ -0.62
VPS35-206ENST00000565228 TNFAIP1Q13829 316 aa11.18□□□□□ -0.62
VPS35-206ENST00000565228 VGLL4Q14135 290 aa11.18□□□□□ -0.62
VPS35-206ENST00000565228 TTF1Q15361 905 aaPredicted RBP11.18□□□□□ -0.62
VPS35-206ENST00000565228 UBE3CQ15386 1083 aa11.18□□□□□ -0.62
VPS35-206ENST00000565228 CCDC84Q86UT8 332 aaPredicted RBP11.18□□□□□ -0.62
VPS35-206ENST00000565228 ZKSCAN4Q969J2 545 aaPredicted RBP11.18□□□□□ -0.62
VPS35-206ENST00000565228 ZBTB4Q9P1Z0 1013 aaPredicted RBP11.18□□□□□ -0.62
VPS35-206ENST00000565228 SAP30BPQ9UHR5 308 aaKnown RBP11.18□□□□□ -0.62
VPS35-206ENST00000565228 PALD1Q9ULE6 856 aa11.18□□□□□ -0.62
VPS35-206ENST00000565228 ATAD5Q96QE3 1844 aa11.17□□□□□ -0.62
VPS35-206ENST00000565228 CYP2D7A0A087X1C5 515 aa11.17□□□□□ -0.62
VPS35-206ENST00000565228 MAGEB6P1A0A0J9YX57 407 aa11.17□□□□□ -0.62
VPS35-206ENST00000565228 TNNI2P48788 182 aa11.17□□□□□ -0.62
VPS35-206ENST00000565228 ZNF157P51786 506 aaPredicted RBP11.17□□□□□ -0.62
VPS35-206ENST00000565228 TTLL12Q14166 644 aaPredicted RBP11.17□□□□□ -0.62
VPS35-206ENST00000565228 SUPT20HL1Q3ZLR7 823 aa11.17□□□□□ -0.62
VPS35-206ENST00000565228 CCDC129Q6ZRS4 1044 aa11.17□□□□□ -0.62
VPS35-206ENST00000565228 METTL16Q86W50 562 aaKnown RBP11.17□□□□□ -0.62
VPS35-206ENST00000565228 SLF2Q8IX21 1173 aa11.17□□□□□ -0.62
VPS35-206ENST00000565228 TMOD2Q9NZR1 351 aa11.17□□□□□ -0.62
VPS35-206ENST00000565228 TACC3Q9Y6A5 838 aa11.17□□□□□ -0.62
VPS35-206ENST00000565228 COL2A1P02458 1487 aaPredicted RBP11.17□□□□□ -0.62
VPS35-206ENST00000565228 PTPRFP10586 1907 aa11.16□□□□□ -0.62
VPS35-206ENST00000565228 RNF113AO15541 343 aaKnown RBP11.16□□□□□ -0.62
VPS35-206ENST00000565228 PLCD1P51178 756 aa11.16□□□□□ -0.62
VPS35-206ENST00000565228 KIF23Q02241 960 aaPredicted RBP11.16□□□□□ -0.62
VPS35-206ENST00000565228 ZMYM1Q5SVZ6 1142 aa11.16□□□□□ -0.62
VPS35-206ENST00000565228 PAXIP1Q6ZW49 1069 aaPredicted RBP11.16□□□□□ -0.62
VPS35-206ENST00000565228 FAM227BQ96M60 508 aa11.16□□□□□ -0.62
VPS35-206ENST00000565228 CSRNP1Q96S65 589 aa11.16□□□□□ -0.62
VPS35-206ENST00000565228 STRBPQ96SI9 672 aaKnown RBP11.16□□□□□ -0.62
VPS35-206ENST00000565228 ELP3Q9H9T3 547 aa11.16□□□□□ -0.62
VPS35-206ENST00000565228 EPB41L4AQ9HCS5 686 aaPredicted RBP11.16□□□□□ -0.62
Retrieved 100 of 20,778 RNA–protein pairs in 101.6 ms