RNA–Protein interactions for RNA: ENST00000561381.5

USP3-220, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 2

Gene USP3, Length 979 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-220ENST00000561381 ECM2O94769 699 aaPredicted RBP14.42□□□□□ -0.1
USP3-220ENST00000561381 SLURP2P0DP57 97 aa14.42□□□□□ -0.1
USP3-220ENST00000561381 RGS3P49796 1198 aa14.42□□□□□ -0.1
USP3-220ENST00000561381 PPATQ06203 517 aa14.42□□□□□ -0.1
USP3-220ENST00000561381 MTX1Q13505 466 aa14.42□□□□□ -0.1
USP3-220ENST00000561381 PRPF38BQ5VTL8 546 aaKnown RBP14.42□□□□□ -0.1
USP3-220ENST00000561381 SH3BP5LQ7L8J4 393 aa14.42□□□□□ -0.1
USP3-220ENST00000561381 DZIP1Q86YF9 867 aaKnown RBP14.42□□□□□ -0.1
USP3-220ENST00000561381 CLUAP1Q96AJ1 413 aa14.42□□□□□ -0.1
USP3-220ENST00000561381 PNMA6EA0A0J9YXQ4 647 aa14.41□□□□□ -0.1
USP3-220ENST00000561381 ATF7IPQ6VMQ6 1270 aa14.41□□□□□ -0.1
USP3-220ENST00000561381 ZGPATQ8N5A5 531 aaKnown RBP14.41□□□□□ -0.1
USP3-220ENST00000561381 ZCCHC17Q9NP64 241 aaKnown RBP14.41□□□□□ -0.1
USP3-220ENST00000561381 DDX4Q9NQI0 724 aaKnown RBP14.41□□□□□ -0.1
USP3-220ENST00000561381 KCNH4Q9UQ05 1017 aa14.41□□□□□ -0.1
USP3-220ENST00000561381 ATRNL1Q5VV63 1379 aa14.41□□□□□ -0.1
USP3-220ENST00000561381 MKI67P46013 3256 aaKnown RBP14.4□□□□□ -0.1
USP3-220ENST00000561381 RFX7Q2KHR2 1363 aa14.4□□□□□ -0.1
USP3-220ENST00000561381 PHF20L1A8MW92 1017 aa14.4□□□□□ -0.1
USP3-220ENST00000561381 IPO8O15397 1037 aaKnown RBP14.4□□□□□ -0.1
USP3-220ENST00000561381 EN2P19622 333 aaPredicted RBP14.4□□□□□ -0.1
USP3-220ENST00000561381 LACTBP83111 547 aaPredicted RBP14.4□□□□□ -0.1
USP3-220ENST00000561381 MOGSQ13724 837 aa14.4□□□□□ -0.1
USP3-220ENST00000561381 NOL9Q5SY16 702 aaKnown RBP14.4□□□□□ -0.1
USP3-220ENST00000561381 PI16Q6UXB8 463 aa14.4□□□□□ -0.1
USP3-220ENST00000561381 ZNF384Q8TF68 577 aa14.4□□□□□ -0.1
USP3-220ENST00000561381 ZNF333Q96JL9 665 aa14.4□□□□□ -0.1
USP3-220ENST00000561381 NEUROD6Q96NK8 337 aa14.4□□□□□ -0.1
USP3-220ENST00000561381 PHF12Q96QT6 1004 aa14.4□□□□□ -0.1
USP3-220ENST00000561381 IDI2Q9BXS1 227 aa14.4□□□□□ -0.1
USP3-220ENST00000561381 CPA4Q9UI42 421 aa14.4□□□□□ -0.1
USP3-220ENST00000561381 AKAP2Q9Y2D5 859 aa14.4□□□□□ -0.1
USP3-220ENST00000561381 PDS5AQ29RF7 1337 aaKnown RBP14.4□□□□□ -0.1
USP3-220ENST00000561381 DDTLA6NHG4 134 aaPredicted RBP14.39□□□□□ -0.11
USP3-220ENST00000561381 PDHXO00330 501 aa14.39□□□□□ -0.11
USP3-220ENST00000561381 ENTPD3O75355 529 aa14.39□□□□□ -0.11
USP3-220ENST00000561381 WDHD1O75717 1129 aaPredicted RBP14.39□□□□□ -0.11
USP3-220ENST00000561381 MYCP01106 439 aaPredicted RBP14.39□□□□□ -0.11
USP3-220ENST00000561381 GNAI2P04899 355 aa14.39□□□□□ -0.11
USP3-220ENST00000561381 CTGFP29279 349 aa14.39□□□□□ -0.11
USP3-220ENST00000561381 BTDP43251 543 aa14.39□□□□□ -0.11
USP3-220ENST00000561381 MECOMQ03112 1051 aa14.39□□□□□ -0.11
USP3-220ENST00000561381 MVPQ14764 893 aaKnown RBP14.39□□□□□ -0.11
USP3-220ENST00000561381 SLC9C1Q4G0N8 1177 aa14.39□□□□□ -0.11
USP3-220ENST00000561381 C17orf99Q6UX52 265 aa14.39□□□□□ -0.11
USP3-220ENST00000561381 TBC1D9Q6ZT07 1266 aa14.39□□□□□ -0.11
USP3-220ENST00000561381 ANKRD23Q86SG2 305 aa14.39□□□□□ -0.11
USP3-220ENST00000561381 ZSCAN29Q8IWY8 852 aaPredicted RBP14.39□□□□□ -0.11
USP3-220ENST00000561381 FAM163AQ96GL9 167 aaPredicted RBP14.39□□□□□ -0.11
USP3-220ENST00000561381 HMG20BQ9P0W2 317 aa14.39□□□□□ -0.11
USP3-220ENST00000561381 BRCA2P51587 3418 aa14.39□□□□□ -0.11
USP3-220ENST00000561381 PICALMQ13492 652 aa14.38□□□□□ -0.11
USP3-220ENST00000561381 ARHGEF6Q15052 776 aa14.38□□□□□ -0.11
USP3-220ENST00000561381 ERICH6Q7L0X2 663 aa14.38□□□□□ -0.11
USP3-220ENST00000561381 TMEM57Q8N5G2 664 aa14.38□□□□□ -0.11
USP3-220ENST00000561381 SH3TC2Q8TF17 1288 aa14.38□□□□□ -0.11
USP3-220ENST00000561381 DOCK2Q92608 1830 aa14.38□□□□□ -0.11
USP3-220ENST00000561381 MROH7-TTC4A0A0A0MT08 1334 aa14.38□□□□□ -0.11
USP3-220ENST00000561381 ADGRA2Q96PE1 1338 aa14.38□□□□□ -0.11
USP3-220ENST00000561381 RBBP6Q7Z6E9 1792 aaKnown RBP14.37□□□□□ -0.11
USP3-220ENST00000561381 GPR75-ASB3A0A0A6YYF3 556 aa14.37□□□□□ -0.11
USP3-220ENST00000561381 RHBDL3P58872 404 aa14.37□□□□□ -0.11
USP3-220ENST00000561381 KIF22Q14807 665 aa14.37□□□□□ -0.11
USP3-220ENST00000561381 SPTY2D1Q68D10 685 aaPredicted RBP14.37□□□□□ -0.11
USP3-220ENST00000561381 GPAT2Q6NUI2 795 aa14.37□□□□□ -0.11
USP3-220ENST00000561381 SCYL3Q8IZE3 742 aa14.37□□□□□ -0.11
USP3-220ENST00000561381 SPATA5Q8NB90 893 aa14.37□□□□□ -0.11
USP3-220ENST00000561381 FRMD4AQ9P2Q2 1039 aaPredicted RBP14.37□□□□□ -0.11
USP3-220ENST00000561381 ZHX2Q9Y6X8 837 aa14.37□□□□□ -0.11
USP3-220ENST00000561381 PTPRAP18433 802 aa14.36□□□□□ -0.11
USP3-220ENST00000561381 MCAMP43121 646 aa14.36□□□□□ -0.11
USP3-220ENST00000561381 MAP3K10Q02779 954 aa14.36□□□□□ -0.11
USP3-220ENST00000561381 G3BP1Q13283 466 aaKnown RBP eCLIP14.36□□□□□ -0.11
USP3-220ENST00000561381 GORABQ5T7V8 394 aa14.36□□□□□ -0.11
USP3-220ENST00000561381 CCDC84Q86UT8 332 aaPredicted RBP14.36□□□□□ -0.11
USP3-220ENST00000561381 SLF2Q8IX21 1173 aa14.36□□□□□ -0.11
USP3-220ENST00000561381 TRIM47Q96LD4 638 aa14.36□□□□□ -0.11
USP3-220ENST00000561381 FAM196BA6NMK8 535 aa14.35□□□□□ -0.11
USP3-220ENST00000561381 CXCL11O14625 94 aa14.35□□□□□ -0.11
USP3-220ENST00000561381 CYP2C8P10632 490 aa14.35□□□□□ -0.11
USP3-220ENST00000561381 ARID4AP29374 1257 aaPredicted RBP14.35□□□□□ -0.11
USP3-220ENST00000561381 PSMC4P43686 418 aa14.35□□□□□ -0.11
USP3-220ENST00000561381 SLC4A8Q2Y0W8 1093 aa14.35□□□□□ -0.11
USP3-220ENST00000561381 ZKSCAN2Q63HK3 967 aa14.35□□□□□ -0.11
USP3-220ENST00000561381 NBPF11Q86T75 865 aa14.35□□□□□ -0.11
USP3-220ENST00000561381 MIER1Q8N108 512 aa14.35□□□□□ -0.11
USP3-220ENST00000561381 NSUN4Q96CB9 384 aaKnown RBP14.35□□□□□ -0.11
USP3-220ENST00000561381 TMEM106CQ9BVX2 250 aa14.35□□□□□ -0.11
USP3-220ENST00000561381 C1orf115Q9H7X2 142 aa14.35□□□□□ -0.11
USP3-220ENST00000561381 PICK1Q9NRD5 415 aa14.35□□□□□ -0.11
USP3-220ENST00000561381 AFG3L2Q9Y4W6 797 aa14.35□□□□□ -0.11
USP3-220ENST00000561381 A0A0G2JLL6 359 aaPredicted RBP14.34□□□□□ -0.11
USP3-220ENST00000561381 OSBPP22059 807 aa14.34□□□□□ -0.11
USP3-220ENST00000561381 PRRT2Q7Z6L0 340 aaPredicted RBP14.34□□□□□ -0.11
USP3-220ENST00000561381 PARK7Q99497 189 aaKnown RBP14.34□□□□□ -0.11
USP3-220ENST00000561381 RAI14Q9P0K7 980 aa14.34□□□□□ -0.11
USP3-220ENST00000561381 CTNND1O60716 968 aaKnown RBP14.33□□□□□ -0.12
USP3-220ENST00000561381 FMNL1O95466 1100 aaPredicted RBP14.33□□□□□ -0.12
USP3-220ENST00000561381 GNRH1P01148 92 aa14.33□□□□□ -0.12
USP3-220ENST00000561381 BCRP11274 1271 aa14.33□□□□□ -0.12
Retrieved 100 of 20,778 RNA–protein pairs in 29.1 ms