RNA–Protein interactions for RNA: ENST00000560858.1

SPG11-223, Transcript of SPG11, spatacsin vesicle trafficking associated, human

TSL 5

Gene SPG11, Length 447 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SPG11-223	ENST00000560858	KCNA10	Q16322	511 aa		4.26	□□□□□ -1.73
SPG11-223	ENST00000560858	TMEM164	Q5U3C3	297 aa		4.26	□□□□□ -1.73
SPG11-223	ENST00000560858	FYB2	Q5VWT5	728 aa		4.26	□□□□□ -1.73
SPG11-223	ENST00000560858	FANCD2OS	Q96PS1	177 aa		4.26	□□□□□ -1.73
SPG11-223	ENST00000560858	SSU72	Q9NP77	194 aa	Known RBP	4.26	□□□□□ -1.73
SPG11-223	ENST00000560858	GTF2IRD1	Q9UHL9	959 aa		4.26	□□□□□ -1.73
SPG11-223	ENST00000560858		U3KQE9	123 aa		4.26	□□□□□ -1.73
SPG11-223	ENST00000560858	ATG7	O95352	703 aa		4.25	□□□□□ -1.73
SPG11-223	ENST00000560858	KRT1	P04264	644 aa		4.25	□□□□□ -1.73
SPG11-223	ENST00000560858	LIG1	P18858	919 aa		4.25	□□□□□ -1.73
SPG11-223	ENST00000560858	ATP2B4	P23634	1241 aa		4.25	□□□□□ -1.73
SPG11-223	ENST00000560858	DBX2	Q6ZNG2	339 aa		4.25	□□□□□ -1.73
SPG11-223	ENST00000560858	RELT	Q969Z4	430 aa		4.25	□□□□□ -1.73
SPG11-223	ENST00000560858	CSRNP1	Q96S65	589 aa		4.25	□□□□□ -1.73
SPG11-223	ENST00000560858	DIRC2	Q96SL1	478 aa		4.25	□□□□□ -1.73
SPG11-223	ENST00000560858	TCF12	Q99081	682 aa		4.25	□□□□□ -1.73
SPG11-223	ENST00000560858	DISC1	Q9NRI5	854 aa		4.25	□□□□□ -1.73
SPG11-223	ENST00000560858	ZNF777	Q9ULD5	760 aa	Predicted RBP	4.25	□□□□□ -1.73
SPG11-223	ENST00000560858		A0A1W2PP55	124 aa		4.24	□□□□□ -1.73
SPG11-223	ENST00000560858	TCAF2	A6NFQ2	919 aa		4.24	□□□□□ -1.73
SPG11-223	ENST00000560858	POLR3D	P05423	398 aa	Predicted RBP	4.24	□□□□□ -1.73
SPG11-223	ENST00000560858	MPST	P25325	297 aa		4.24	□□□□□ -1.73
SPG11-223	ENST00000560858	TTLL4	Q14679	1199 aa		4.24	□□□□□ -1.73
SPG11-223	ENST00000560858	ATG14	Q6ZNE5	492 aa		4.24	□□□□□ -1.73
SPG11-223	ENST00000560858	NSUN3	Q9H649	340 aa	Known RBP	4.24	□□□□□ -1.73
SPG11-223	ENST00000560858	JAG2	Q9Y219	1238 aa		4.24	□□□□□ -1.73
SPG11-223	ENST00000560858	IGF2BP3	O00425	579 aa	Known RBP eCLIP	4.23	□□□□□ -1.73
SPG11-223	ENST00000560858	HCLS1	P14317	486 aa	Predicted RBP	4.23	□□□□□ -1.73
SPG11-223	ENST00000560858	KRTAP5-3	Q6L8H2	238 aa		4.23	□□□□□ -1.73
SPG11-223	ENST00000560858	PHF6	Q8IWS0	365 aa	Known RBP eCLIP	4.23	□□□□□ -1.73
SPG11-223	ENST00000560858	GALNT12	Q8IXK2	581 aa		4.23	□□□□□ -1.73
SPG11-223	ENST00000560858	TOP6BL	Q8N6T0	577 aa		4.23	□□□□□ -1.73
SPG11-223	ENST00000560858	WDR89	Q96FK6	387 aa	Predicted RBP	4.23	□□□□□ -1.73
SPG11-223	ENST00000560858	CCDC120	Q96HB5	630 aa		4.23	□□□□□ -1.73
SPG11-223	ENST00000560858	ZC3H12C	Q9C0D7	883 aa	Known RBP	4.23	□□□□□ -1.73
SPG11-223	ENST00000560858	ZNF576	Q9H609	170 aa		4.23	□□□□□ -1.73
SPG11-223	ENST00000560858	CCDC86	Q9H6F5	360 aa	Known RBP	4.23	□□□□□ -1.73
SPG11-223	ENST00000560858	DCP1A	Q9NPI6	582 aa	Predicted RBP	4.23	□□□□□ -1.73
SPG11-223	ENST00000560858	NUAK1	O60285	661 aa		4.22	□□□□□ -1.73
SPG11-223	ENST00000560858	FAM13A	O94988	1023 aa		4.22	□□□□□ -1.73
SPG11-223	ENST00000560858	GDNF	P39905	211 aa		4.22	□□□□□ -1.73
SPG11-223	ENST00000560858	KIAA0319	Q5VV43	1072 aa		4.22	□□□□□ -1.73
SPG11-223	ENST00000560858	GTF3C2	Q8WUA4	911 aa	Predicted RBP	4.22	□□□□□ -1.73
SPG11-223	ENST00000560858	KCNN1	Q92952	543 aa		4.22	□□□□□ -1.73
SPG11-223	ENST00000560858	HEXIM2	Q96MH2	286 aa	Known RBP	4.22	□□□□□ -1.73
SPG11-223	ENST00000560858	EPB41L4B	Q9H329	900 aa		4.22	□□□□□ -1.73
SPG11-223	ENST00000560858	CD320	Q9NPF0	282 aa		4.22	□□□□□ -1.73
SPG11-223	ENST00000560858	GNAT3	A8MTJ3	354 aa		4.21	□□□□□ -1.74
SPG11-223	ENST00000560858	NEFL	P07196	543 aa		4.21	□□□□□ -1.74
SPG11-223	ENST00000560858	HOXA5	P20719	270 aa		4.21	□□□□□ -1.74
SPG11-223	ENST00000560858	ITPKA	P23677	461 aa		4.21	□□□□□ -1.74
SPG11-223	ENST00000560858	CLCN7	P51798	805 aa		4.21	□□□□□ -1.74
SPG11-223	ENST00000560858	PTPN12	Q05209	780 aa	Known RBP	4.21	□□□□□ -1.74
SPG11-223	ENST00000560858	KIF4B	Q2VIQ3	1234 aa		4.21	□□□□□ -1.74
SPG11-223	ENST00000560858	SPACA3	Q8IXA5	215 aa		4.21	□□□□□ -1.74
SPG11-223	ENST00000560858	C20orf173	Q96LM9	149 aa		4.21	□□□□□ -1.74
SPG11-223	ENST00000560858	EHD4	Q9H223	541 aa		4.21	□□□□□ -1.74
SPG11-223	ENST00000560858	KRT82	Q9NSB4	513 aa		4.21	□□□□□ -1.74
SPG11-223	ENST00000560858	SMG5	Q9UPR3	1016 aa	Known RBP	4.21	□□□□□ -1.74
SPG11-223	ENST00000560858	TRBV21OR9-2	A0A075B6F4	123 aa	Predicted RBP	4.2	□□□□□ -1.74
SPG11-223	ENST00000560858	ETV2	O00321	342 aa	Predicted RBP	4.2	□□□□□ -1.74
SPG11-223	ENST00000560858	MED14OS	P0DP75	135 aa		4.2	□□□□□ -1.74
SPG11-223	ENST00000560858	GLDC	P23378	1020 aa		4.2	□□□□□ -1.74
SPG11-223	ENST00000560858	SRPK2	P78362	688 aa	Known RBP	4.2	□□□□□ -1.74
SPG11-223	ENST00000560858	RPS26P11	Q5JNZ5	115 aa	Predicted RBP	4.2	□□□□□ -1.74
SPG11-223	ENST00000560858	NPAS4	Q8IUM7	802 aa		4.2	□□□□□ -1.74
SPG11-223	ENST00000560858	CARS2	Q9HA77	564 aa	Known RBP	4.2	□□□□□ -1.74
SPG11-223	ENST00000560858	PARD6A	Q9NPB6	346 aa		4.2	□□□□□ -1.74
SPG11-223	ENST00000560858	ZNF862	O60290	1169 aa		4.19	□□□□□ -1.74
SPG11-223	ENST00000560858	FOXD2	O60548	495 aa	Predicted RBP	4.19	□□□□□ -1.74
SPG11-223	ENST00000560858	GSTP1	P09211	210 aa	Known RBP	4.19	□□□□□ -1.74
SPG11-223	ENST00000560858	RAC2	P15153	192 aa		4.19	□□□□□ -1.74
SPG11-223	ENST00000560858	NPR3	P17342	541 aa		4.19	□□□□□ -1.74
SPG11-223	ENST00000560858	NKPD1	Q17RQ9	610 aa		4.19	□□□□□ -1.74
SPG11-223	ENST00000560858	FAM214B	Q7L5A3	538 aa		4.19	□□□□□ -1.74
SPG11-223	ENST00000560858	GJD3	Q8N144	294 aa		4.19	□□□□□ -1.74
SPG11-223	ENST00000560858	RNF214	Q8ND24	703 aa		4.19	□□□□□ -1.74
SPG11-223	ENST00000560858	ISL2	Q96A47	359 aa		4.19	□□□□□ -1.74
SPG11-223	ENST00000560858	SLC26A8	Q96RN1	970 aa		4.19	□□□□□ -1.74
SPG11-223	ENST00000560858	IRF2BPL	Q9H1B7	796 aa		4.19	□□□□□ -1.74
SPG11-223	ENST00000560858	ZCCHC4	Q9H5U6	513 aa		4.19	□□□□□ -1.74
SPG11-223	ENST00000560858	PRDM10	Q9NQV6	1147 aa		4.19	□□□□□ -1.74
SPG11-223	ENST00000560858	PCDHGC5	Q9Y5F6	944 aa		4.19	□□□□□ -1.74
SPG11-223	ENST00000560858	PITPNM2	Q9BZ72	1349 aa		4.19	□□□□□ -1.74
SPG11-223	ENST00000560858	SHROOM4	Q9ULL8	1493 aa		4.18	□□□□□ -1.74
SPG11-223	ENST00000560858	FZD6	O60353	706 aa		4.18	□□□□□ -1.74
SPG11-223	ENST00000560858	ZNF157	P51786	506 aa	Predicted RBP	4.18	□□□□□ -1.74
SPG11-223	ENST00000560858	LINC00310	P59036	64 aa		4.18	□□□□□ -1.74
SPG11-223	ENST00000560858	PPP2R3A	Q06190	1150 aa		4.18	□□□□□ -1.74
SPG11-223	ENST00000560858	MTMR3	Q13615	1198 aa		4.18	□□□□□ -1.74
SPG11-223	ENST00000560858	KCNB2	Q92953	911 aa		4.18	□□□□□ -1.74
SPG11-223	ENST00000560858	SLAIN2	Q9P270	581 aa		4.18	□□□□□ -1.74
SPG11-223	ENST00000560858	ABCC9	O60706	1549 aa		4.17	□□□□□ -1.74
SPG11-223	ENST00000560858	FAM155A	B1AL88	458 aa	Predicted RBP	4.17	□□□□□ -1.74
SPG11-223	ENST00000560858	NEFM	P07197	916 aa		4.17	□□□□□ -1.74
SPG11-223	ENST00000560858	SYN1	P17600	705 aa		4.17	□□□□□ -1.74
SPG11-223	ENST00000560858	BMP7	P18075	431 aa		4.17	□□□□□ -1.74
SPG11-223	ENST00000560858	ERVK-24	P63145	666 aa		4.17	□□□□□ -1.74
SPG11-223	ENST00000560858	SF3B2	Q13435	895 aa	Known RBP	4.17	□□□□□ -1.74
SPG11-223	ENST00000560858	ZC3H12A	Q5D1E8	599 aa	Known RBP	4.17	□□□□□ -1.74

Retrieved 100 of 20,778 RNA–protein pairs in 31.4 ms