RNA–Protein interactions for RNA: ENST00000560637.5

VPS13C-209, Transcript of vacuolar protein sorting 13 homolog C, humanhuman

TSL 1 (best)

Gene VPS13C, Length 3,684 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13C-209ENST00000560637 CCDC43Q96MW1 224 aaKnown RBP6.36□□□□□ -1.39
VPS13C-209ENST00000560637 CHAMP1Q96JM3 812 aa6.35□□□□□ -1.39
VPS13C-209ENST00000560637 CPVLQ9H3G5 476 aa6.35□□□□□ -1.39
VPS13C-209ENST00000560637 XPO5Q9HAV4 1204 aaKnown RBP eCLIP6.35□□□□□ -1.39
VPS13C-209ENST00000560637 PKD2L1Q9P0L9 805 aa6.35□□□□□ -1.39
VPS13C-209ENST00000560637 FZD1Q9UP38 647 aa6.35□□□□□ -1.39
VPS13C-209ENST00000560637 FRMPD2Q68DX3 1309 aaPredicted RBP6.35□□□□□ -1.39
VPS13C-209ENST00000560637 GOLGB1Q14789 3259 aaKnown RBP6.35□□□□□ -1.39
VPS13C-209ENST00000560637 MON2Q7Z3U7 1717 aa6.35□□□□□ -1.39
VPS13C-209ENST00000560637 NRAPQ86VF7 1730 aa6.35□□□□□ -1.39
VPS13C-209ENST00000560637 DDNO94850 711 aaPredicted RBP6.35□□□□□ -1.39
VPS13C-209ENST00000560637 CYP21A2P08686 494 aa6.35□□□□□ -1.39
VPS13C-209ENST00000560637 TNNI2P48788 182 aa6.35□□□□□ -1.39
VPS13C-209ENST00000560637 PPARAQ07869 468 aa6.35□□□□□ -1.39
VPS13C-209ENST00000560637 SP8Q8IXZ3 490 aa6.35□□□□□ -1.39
VPS13C-209ENST00000560637 RNF214Q8ND24 703 aa6.35□□□□□ -1.39
VPS13C-209ENST00000560637 DCPSQ96C86 337 aaKnown RBP6.35□□□□□ -1.39
VPS13C-209ENST00000560637 ARID3AQ99856 593 aa6.35□□□□□ -1.39
VPS13C-209ENST00000560637 TANGO6Q9C0B7 1094 aa6.35□□□□□ -1.39
VPS13C-209ENST00000560637 COA1Q9GZY4 146 aa6.35□□□□□ -1.39
VPS13C-209ENST00000560637 HELLSQ9NRZ9 838 aa6.35□□□□□ -1.39
VPS13C-209ENST00000560637 LTN1O94822 1766 aa6.35□□□□□ -1.39
VPS13C-209ENST00000560637 E7EWF7 191 aa6.35□□□□□ -1.39
VPS13C-209ENST00000560637 PSMD14O00487 310 aa6.35□□□□□ -1.39
VPS13C-209ENST00000560637 ADD2P35612 726 aa6.35□□□□□ -1.39
VPS13C-209ENST00000560637 CRKP46108 304 aa6.35□□□□□ -1.39
VPS13C-209ENST00000560637 TNIP1Q15025 636 aa6.35□□□□□ -1.39
VPS13C-209ENST00000560637 RTN1Q16799 776 aa6.35□□□□□ -1.39
VPS13C-209ENST00000560637 USH1GQ495M9 461 aa6.35□□□□□ -1.39
VPS13C-209ENST00000560637 SLC16A10Q8TF71 515 aa6.35□□□□□ -1.39
VPS13C-209ENST00000560637 UBA5Q9GZZ9 404 aa6.35□□□□□ -1.39
VPS13C-209ENST00000560637 IL25Q9H293 177 aa6.35□□□□□ -1.39
VPS13C-209ENST00000560637 TOPAZ1Q8N9V7 1692 aa6.34□□□□□ -1.39
VPS13C-209ENST00000560637 ONECUT3O60422 494 aaPredicted RBP6.34□□□□□ -1.39
VPS13C-209ENST00000560637 C9orf131Q5VYM1 1079 aa6.34□□□□□ -1.39
VPS13C-209ENST00000560637 DHX32Q7L7V1 743 aaKnown RBP6.34□□□□□ -1.39
VPS13C-209ENST00000560637 FCHSD1Q86WN1 690 aa6.34□□□□□ -1.39
VPS13C-209ENST00000560637 MICALL2Q8IY33 904 aa6.34□□□□□ -1.39
VPS13C-209ENST00000560637 PAGR1Q9BTK6 254 aa6.34□□□□□ -1.39
VPS13C-209ENST00000560637 KRT23Q9C075 422 aa6.34□□□□□ -1.39
VPS13C-209ENST00000560637 PICK1Q9NRD5 415 aa6.34□□□□□ -1.39
VPS13C-209ENST00000560637 ATP6V1DQ9Y5K8 247 aa6.34□□□□□ -1.39
VPS13C-209ENST00000560637 TRIM75PA6NK02 468 aa6.34□□□□□ -1.39
VPS13C-209ENST00000560637 PATL2C9JE40 543 aaKnown RBP6.34□□□□□ -1.39
VPS13C-209ENST00000560637 NMT2O60551 498 aa6.34□□□□□ -1.39
VPS13C-209ENST00000560637 JAK2O60674 1132 aa6.34□□□□□ -1.39
VPS13C-209ENST00000560637 GNAT2P19087 354 aa6.34□□□□□ -1.39
VPS13C-209ENST00000560637 ADD1P35611 737 aaKnown RBP6.34□□□□□ -1.39
VPS13C-209ENST00000560637 CASP7P55210 303 aa6.34□□□□□ -1.39
VPS13C-209ENST00000560637 DRC7Q8IY82 874 aa6.34□□□□□ -1.39
VPS13C-209ENST00000560637 PDILTQ8N807 584 aa6.34□□□□□ -1.39
VPS13C-209ENST00000560637 SDF4Q9BRK5 362 aa6.34□□□□□ -1.39
VPS13C-209ENST00000560637 CNOT7Q9UIV1 285 aaKnown RBP6.34□□□□□ -1.39
VPS13C-209ENST00000560637 PCDHAC2Q9Y5I4 1007 aa6.34□□□□□ -1.39
VPS13C-209ENST00000560637 SORBS3O60504 671 aa6.34□□□□□ -1.4
VPS13C-209ENST00000560637 MCM2P49736 904 aa6.34□□□□□ -1.4
VPS13C-209ENST00000560637 SNAP25P60880 206 aa6.34□□□□□ -1.4
VPS13C-209ENST00000560637 NUCB2P80303 420 aa6.34□□□□□ -1.4
VPS13C-209ENST00000560637 SSRP1Q08945 709 aaKnown RBP6.34□□□□□ -1.4
VPS13C-209ENST00000560637 CRAMP1Q96RY5 1269 aa6.34□□□□□ -1.4
VPS13C-209ENST00000560637 RAD50Q92878 1312 aa6.33□□□□□ -1.4
VPS13C-209ENST00000560637 HMGB1P09429 215 aaKnown RBP6.33□□□□□ -1.4
VPS13C-209ENST00000560637 SLC1A4P43007 532 aa6.33□□□□□ -1.4
VPS13C-209ENST00000560637 GMPSP49915 693 aaPredicted RBP6.33□□□□□ -1.4
VPS13C-209ENST00000560637 NFKBIBQ15653 356 aa6.33□□□□□ -1.4
VPS13C-209ENST00000560637 ZMYM1Q5SVZ6 1142 aa6.33□□□□□ -1.4
VPS13C-209ENST00000560637 AKNAD1Q5T1N1 836 aa6.33□□□□□ -1.4
VPS13C-209ENST00000560637 CAVIN1Q6NZI2 390 aaKnown RBP6.33□□□□□ -1.4
VPS13C-209ENST00000560637 CCDC174Q6PII3 467 aa6.33□□□□□ -1.4
VPS13C-209ENST00000560637 PODNQ7Z5L7 613 aa6.33□□□□□ -1.4
VPS13C-209ENST00000560637 KIFC2Q96AC6 838 aa6.33□□□□□ -1.4
VPS13C-209ENST00000560637 STAP2Q9UGK3 403 aa6.33□□□□□ -1.4
VPS13C-209ENST00000560637 GLI3P10071 1580 aa6.33□□□□□ -1.4
VPS13C-209ENST00000560637 CRYBG1Q9Y4K1 1723 aa6.33□□□□□ -1.4
VPS13C-209ENST00000560637 PDCP20941 246 aa6.33□□□□□ -1.4
VPS13C-209ENST00000560637 SLC16A2P36021 539 aa6.33□□□□□ -1.4
VPS13C-209ENST00000560637 GRIK5Q16478 980 aa6.33□□□□□ -1.4
VPS13C-209ENST00000560637 CERKLQ49MI3 558 aaPredicted RBP6.33□□□□□ -1.4
VPS13C-209ENST00000560637 CC2D2BQ6DHV5 1058 aa6.33□□□□□ -1.4
VPS13C-209ENST00000560637 LRP10Q7Z4F1 713 aa6.33□□□□□ -1.4
VPS13C-209ENST00000560637 ALG1Q9BT22 464 aa6.33□□□□□ -1.4
VPS13C-209ENST00000560637 ABT1Q9ULW3 272 aaKnown RBP6.33□□□□□ -1.4
VPS13C-209ENST00000560637 TAF6LQ9Y6J9 622 aa6.33□□□□□ -1.4
VPS13C-209ENST00000560637 V9GY48 417 aaPredicted RBP6.33□□□□□ -1.4
VPS13C-209ENST00000560637 ATP10DQ9P241 1426 aa6.33□□□□□ -1.4
VPS13C-209ENST00000560637 RGPD3A6NKT7 1758 aaPredicted RBP6.32□□□□□ -1.4
VPS13C-209ENST00000560637 RGPD4Q7Z3J3 1758 aa6.32□□□□□ -1.4
VPS13C-209ENST00000560637 CDKL5O76039 1030 aa6.32□□□□□ -1.4
VPS13C-209ENST00000560637 CD2BP2O95400 341 aaKnown RBP6.32□□□□□ -1.4
VPS13C-209ENST00000560637 RUFY3Q7L099 469 aa6.32□□□□□ -1.4
VPS13C-209ENST00000560637 ZFP91Q96JP5 570 aaPredicted RBP6.32□□□□□ -1.4
VPS13C-209ENST00000560637 ZSCAN31Q96LW9 406 aaPredicted RBP6.32□□□□□ -1.4
VPS13C-209ENST00000560637 CNNM2Q9H8M5 875 aa6.32□□□□□ -1.4
VPS13C-209ENST00000560637 GPR108Q9NPR9 543 aa6.32□□□□□ -1.4
VPS13C-209ENST00000560637 ZNRF3Q9ULT6 936 aa6.32□□□□□ -1.4
VPS13C-209ENST00000560637 TNKSO95271 1327 aa6.32□□□□□ -1.4
VPS13C-209ENST00000560637 CCDC196A0A1B0GTZ2 297 aa6.32□□□□□ -1.4
VPS13C-209ENST00000560637 NAPAP54920 295 aa6.32□□□□□ -1.4
VPS13C-209ENST00000560637 CAMK4Q16566 473 aa6.32□□□□□ -1.4
VPS13C-209ENST00000560637 NSMFQ6X4W1 530 aa6.32□□□□□ -1.4
Retrieved 100 of 20,778 RNA–protein pairs in 62.5 ms