RNA–Protein interactions for RNA: ENST00000560467.1

LDLR-212, Transcript of low density lipoprotein receptor, humanhuman

TSL 3

Gene LDLR, Length 928 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-212ENST00000560467 CEP126Q9P2H0 1117 aa14.36□□□□□ -0.11
LDLR-212ENST00000560467 COLQQ9Y215 455 aaPredicted RBP14.36□□□□□ -0.11
LDLR-212ENST00000560467 RBBP6Q7Z6E9 1792 aaKnown RBP14.36□□□□□ -0.11
LDLR-212ENST00000560467 TRIOBPQ9H2D6 2365 aa14.36□□□□□ -0.11
LDLR-212ENST00000560467 H0YGN5 161 aa14.35□□□□□ -0.11
LDLR-212ENST00000560467 EYA2O00167 538 aa14.35□□□□□ -0.11
LDLR-212ENST00000560467 WDHD1O75717 1129 aaPredicted RBP14.35□□□□□ -0.11
LDLR-212ENST00000560467 CTGFP29279 349 aa14.35□□□□□ -0.11
LDLR-212ENST00000560467 KIF22Q14807 665 aa14.35□□□□□ -0.11
LDLR-212ENST00000560467 PUM3Q15397 648 aaKnown RBP14.35□□□□□ -0.11
LDLR-212ENST00000560467 FKBP1CQ5VVH2 108 aa14.35□□□□□ -0.11
LDLR-212ENST00000560467 ZCCHC17Q9NP64 241 aaKnown RBP14.35□□□□□ -0.11
LDLR-212ENST00000560467 CPA4Q9UI42 421 aa14.35□□□□□ -0.11
LDLR-212ENST00000560467 AKAP2Q9Y2D5 859 aa14.35□□□□□ -0.11
LDLR-212ENST00000560467 RPAP1Q9BWH6 1393 aaPredicted RBP14.34□□□□□ -0.11
LDLR-212ENST00000560467 FGFR2P21802 821 aa14.34□□□□□ -0.11
LDLR-212ENST00000560467 DCAF15Q66K64 600 aa14.34□□□□□ -0.11
LDLR-212ENST00000560467 MRIQ9BWK5 157 aa14.34□□□□□ -0.11
LDLR-212ENST00000560467 ZNF341Q9BYN7 854 aa14.34□□□□□ -0.11
LDLR-212ENST00000560467 PA2G4Q9UQ80 394 aaKnown RBP14.34□□□□□ -0.11
LDLR-212ENST00000560467 MAST3O60307 1309 aa14.34□□□□□ -0.11
LDLR-212ENST00000560467 IFIT1P09914 478 aaKnown RBP14.33□□□□□ -0.12
LDLR-212ENST00000560467 TCP10Q12799 353 aa14.33□□□□□ -0.12
LDLR-212ENST00000560467 NFIAQ12857 509 aa14.33□□□□□ -0.12
LDLR-212ENST00000560467 MTFR1Q15390 333 aa14.33□□□□□ -0.12
LDLR-212ENST00000560467 DIXDC1Q155Q3 683 aa14.33□□□□□ -0.12
LDLR-212ENST00000560467 HHIPL2Q6UWX4 724 aa14.33□□□□□ -0.12
LDLR-212ENST00000560467 C17orf99Q6UX52 265 aa14.33□□□□□ -0.12
LDLR-212ENST00000560467 SHISA4Q96DD7 197 aa14.33□□□□□ -0.12
LDLR-212ENST00000560467 HOOK2Q96ED9 719 aa14.33□□□□□ -0.12
LDLR-212ENST00000560467 TRIM47Q96LD4 638 aa14.33□□□□□ -0.12
LDLR-212ENST00000560467 SUGT1Q9Y2Z0 365 aa14.33□□□□□ -0.12
LDLR-212ENST00000560467 DAGLAQ9Y4D2 1042 aa14.33□□□□□ -0.12
LDLR-212ENST00000560467 ZSWIM8A7E2V4 1837 aa14.33□□□□□ -0.12
LDLR-212ENST00000560467 ADGRA2Q96PE1 1338 aa14.33□□□□□ -0.12
LDLR-212ENST00000560467 PDHXO00330 501 aa14.32□□□□□ -0.12
LDLR-212ENST00000560467 PSMC4P43686 418 aa14.32□□□□□ -0.12
LDLR-212ENST00000560467 RFX5P48382 616 aaPredicted RBP14.32□□□□□ -0.12
LDLR-212ENST00000560467 PPATQ06203 517 aa14.32□□□□□ -0.12
LDLR-212ENST00000560467 ERC2O15083 957 aa14.31□□□□□ -0.12
LDLR-212ENST00000560467 SMARCA5O60264 1052 aaPredicted RBP14.31□□□□□ -0.12
LDLR-212ENST00000560467 EIF5BO60841 1220 aaKnown RBP14.31□□□□□ -0.12
LDLR-212ENST00000560467 GNRH1P01148 92 aa14.31□□□□□ -0.12
LDLR-212ENST00000560467 SLC5A1P13866 664 aa14.31□□□□□ -0.12
LDLR-212ENST00000560467 OSBPP22059 807 aa14.31□□□□□ -0.12
LDLR-212ENST00000560467 MOGSQ13724 837 aa14.31□□□□□ -0.12
LDLR-212ENST00000560467 GORABQ5T7V8 394 aa14.31□□□□□ -0.12
LDLR-212ENST00000560467 CDC42EP5Q6NZY7 148 aa14.31□□□□□ -0.12
LDLR-212ENST00000560467 ANKRD23Q86SG2 305 aa14.31□□□□□ -0.12
LDLR-212ENST00000560467 FAM151AQ8WW52 585 aa14.31□□□□□ -0.12
LDLR-212ENST00000560467 IL1RAPL2Q9NP60 686 aa14.31□□□□□ -0.12
LDLR-212ENST00000560467 SRRDQ9UH36 339 aa14.31□□□□□ -0.12
LDLR-212ENST00000560467 ZNF112Q9UJU3 913 aa14.31□□□□□ -0.12
LDLR-212ENST00000560467 KCNH4Q9UQ05 1017 aa14.31□□□□□ -0.12
LDLR-212ENST00000560467 PRDX5P30044 214 aa14.3□□□□□ -0.12
LDLR-212ENST00000560467 PRMT2P55345 433 aa14.3□□□□□ -0.12
LDLR-212ENST00000560467 AACSQ86V21 672 aa14.3□□□□□ -0.12
LDLR-212ENST00000560467 WDR66Q8TBY9 1149 aa14.3□□□□□ -0.12
LDLR-212ENST00000560467 LPIN2Q92539 896 aa14.3□□□□□ -0.12
LDLR-212ENST00000560467 NEUROD6Q96NK8 337 aa14.3□□□□□ -0.12
LDLR-212ENST00000560467 GPR108Q9NPR9 543 aa14.3□□□□□ -0.12
LDLR-212ENST00000560467 FAM198AQ9UFP1 575 aa14.3□□□□□ -0.12
LDLR-212ENST00000560467 FMNL1O95466 1100 aaPredicted RBP14.29□□□□□ -0.12
LDLR-212ENST00000560467 MX1P20591 662 aa14.29□□□□□ -0.12
LDLR-212ENST00000560467 TFCP2Q12800 502 aa14.29□□□□□ -0.12
LDLR-212ENST00000560467 NOL9Q5SY16 702 aaKnown RBP14.29□□□□□ -0.12
LDLR-212ENST00000560467 CHRDL2Q6WN34 429 aa14.29□□□□□ -0.12
LDLR-212ENST00000560467 ATG9AQ7Z3C6 839 aa14.29□□□□□ -0.12
LDLR-212ENST00000560467 ZFPM1Q8IX07 1006 aa14.29□□□□□ -0.12
LDLR-212ENST00000560467 RAET1EQ8TD07 263 aa14.29□□□□□ -0.12
LDLR-212ENST00000560467 MYPNQ86TC9 1320 aa14.29□□□□□ -0.12
LDLR-212ENST00000560467 CYP2C8P10632 490 aa14.28□□□□□ -0.12
LDLR-212ENST00000560467 GRK4P32298 578 aa14.28□□□□□ -0.12
LDLR-212ENST00000560467 PARK7Q99497 189 aaKnown RBP14.28□□□□□ -0.12
LDLR-212ENST00000560467 USP40Q9NVE5 1235 aa14.28□□□□□ -0.12
LDLR-212ENST00000560467 RANBP2P49792 3224 aaKnown RBP14.27□□□□□ -0.12
LDLR-212ENST00000560467 ATRNL1Q5VV63 1379 aa14.27□□□□□ -0.12
LDLR-212ENST00000560467 TTC41PQ6P2S7 1318 aa14.27□□□□□ -0.12
LDLR-212ENST00000560467 CCL5P13501 91 aa14.27□□□□□ -0.13
LDLR-212ENST00000560467 PRKCZQ05513 592 aa14.27□□□□□ -0.13
LDLR-212ENST00000560467 CCDC158Q5M9N0 1113 aa14.27□□□□□ -0.13
LDLR-212ENST00000560467 GPAT2Q6NUI2 795 aa14.27□□□□□ -0.13
LDLR-212ENST00000560467 CASC1Q6TDU7 716 aa14.27□□□□□ -0.13
LDLR-212ENST00000560467 DPF3Q92784 378 aa14.27□□□□□ -0.13
LDLR-212ENST00000560467 ECHDC1Q9NTX5 307 aa14.27□□□□□ -0.13
LDLR-212ENST00000560467 LDHBP07195 334 aaKnown RBP14.26□□□□□ -0.13
LDLR-212ENST00000560467 SLURP2P0DP57 97 aa14.26□□□□□ -0.13
LDLR-212ENST00000560467 BCRP11274 1271 aa14.26□□□□□ -0.13
LDLR-212ENST00000560467 HOXD10P28358 340 aa14.26□□□□□ -0.13
LDLR-212ENST00000560467 PHKA1P46020 1223 aa14.26□□□□□ -0.13
LDLR-212ENST00000560467 ATP2B3Q16720 1220 aa14.26□□□□□ -0.13
LDLR-212ENST00000560467 TNNI3KQ59H18 835 aa14.26□□□□□ -0.13
LDLR-212ENST00000560467 UBE2Q1Q7Z7E8 422 aa14.26□□□□□ -0.13
LDLR-212ENST00000560467 BIN2Q9UBW5 565 aaPredicted RBP14.26□□□□□ -0.13
LDLR-212ENST00000560467 FPGT-TNNI3KV9GXZ4 949 aa14.26□□□□□ -0.13
LDLR-212ENST00000560467 PHF20L1A8MW92 1017 aa14.25□□□□□ -0.13
LDLR-212ENST00000560467 GLRX3O76003 335 aaKnown RBP14.25□□□□□ -0.13
LDLR-212ENST00000560467 GJB1P08034 283 aa14.25□□□□□ -0.13
LDLR-212ENST00000560467 ADORA1P30542 326 aa14.25□□□□□ -0.13
LDLR-212ENST00000560467 GJA8P48165 433 aa14.25□□□□□ -0.13
Retrieved 100 of 20,778 RNA–protein pairs in 109.9 ms