RNA–Protein interactions for RNA: ENST00000558157.5

USP3-206, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 1 (best)

Gene USP3, Length 2,439 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-206ENST00000558157 MMS22LQ6ZRQ5 1243 aa12.52□□□□□ -0.4
USP3-206ENST00000558157 RHPN1Q8TCX5 695 aa12.52□□□□□ -0.4
USP3-206ENST00000558157 LARP6Q9BRS8 491 aaKnown RBP12.52□□□□□ -0.4
USP3-206ENST00000558157 CARD6Q9BX69 1037 aa12.52□□□□□ -0.4
USP3-206ENST00000558157 IL1RAPL2Q9NP60 686 aa12.52□□□□□ -0.4
USP3-206ENST00000558157 SH3TC1Q8TE82 1336 aa12.52□□□□□ -0.4
USP3-206ENST00000558157 URI1O94763 535 aaPredicted RBP12.52□□□□□ -0.41
USP3-206ENST00000558157 CCDC85AQ96PX6 553 aaPredicted RBP12.52□□□□□ -0.41
USP3-206ENST00000558157 DONSONQ9NYP3 566 aa12.52□□□□□ -0.41
USP3-206ENST00000558157 TFIP11Q9UBB9 837 aaKnown RBP12.52□□□□□ -0.41
USP3-206ENST00000558157 TPCN1Q9ULQ1 816 aa12.52□□□□□ -0.41
USP3-206ENST00000558157 KINO60870 393 aaKnown RBP12.51□□□□□ -0.41
USP3-206ENST00000558157 CTSWP56202 376 aa12.51□□□□□ -0.41
USP3-206ENST00000558157 MAP3K9P80192 1104 aa12.51□□□□□ -0.41
USP3-206ENST00000558157 TSGA10IPQ3SY00 556 aa12.51□□□□□ -0.41
USP3-206ENST00000558157 CCDC73Q6ZRK6 1079 aa12.51□□□□□ -0.41
USP3-206ENST00000558157 NUTM1Q86Y26 1132 aa12.51□□□□□ -0.41
USP3-206ENST00000558157 AKT1S1Q96B36 256 aa12.51□□□□□ -0.41
USP3-206ENST00000558157 COPRSQ9NQ92 184 aa12.51□□□□□ -0.41
USP3-206ENST00000558157 EN1Q05925 392 aaPredicted RBP12.51□□□□□ -0.41
USP3-206ENST00000558157 G3BP1Q13283 466 aaKnown RBP eCLIP12.51□□□□□ -0.41
USP3-206ENST00000558157 NECTIN1Q15223 517 aa12.51□□□□□ -0.41
USP3-206ENST00000558157 EZH2Q15910 746 aaKnown RBP12.51□□□□□ -0.41
USP3-206ENST00000558157 LONRF2Q1L5Z9 754 aa12.51□□□□□ -0.41
USP3-206ENST00000558157 GORABQ5T7V8 394 aa12.51□□□□□ -0.41
USP3-206ENST00000558157 FAM173BQ6P4H8 233 aa12.51□□□□□ -0.41
USP3-206ENST00000558157 GOLGA1Q92805 767 aa12.51□□□□□ -0.41
USP3-206ENST00000558157 CCDC34Q96HJ3 373 aa12.51□□□□□ -0.41
USP3-206ENST00000558157 DRC1Q96MC2 740 aa12.51□□□□□ -0.41
USP3-206ENST00000558157 TACO1Q9BSH4 297 aaKnown RBP12.51□□□□□ -0.41
USP3-206ENST00000558157 PDE8AO60658 829 aa12.5□□□□□ -0.41
USP3-206ENST00000558157 CSF1RP07333 972 aa12.5□□□□□ -0.41
USP3-206ENST00000558157 TXLNAP40222 546 aa12.5□□□□□ -0.41
USP3-206ENST00000558157 APOBRQ0VD83 1088 aa12.5□□□□□ -0.41
USP3-206ENST00000558157 RESTQ13127 1097 aa12.5□□□□□ -0.41
USP3-206ENST00000558157 ERC1Q8IUD2 1116 aa12.5□□□□□ -0.41
USP3-206ENST00000558157 AOPEPQ8N6M6 819 aa12.5□□□□□ -0.41
USP3-206ENST00000558157 HMGB2P26583 209 aaKnown RBP12.5□□□□□ -0.41
USP3-206ENST00000558157 FAM160A1Q05DH4 1040 aa12.5□□□□□ -0.41
USP3-206ENST00000558157 HDXQ7Z353 690 aa12.5□□□□□ -0.41
USP3-206ENST00000558157 TMC6Q7Z403 805 aa12.5□□□□□ -0.41
USP3-206ENST00000558157 NECAB1Q8N987 351 aa12.5□□□□□ -0.41
USP3-206ENST00000558157 TTLL11Q8NHH1 800 aa12.5□□□□□ -0.41
USP3-206ENST00000558157 ZNF594Q96JF6 807 aaPredicted RBP12.5□□□□□ -0.41
USP3-206ENST00000558157 CAMKK2Q96RR4 588 aa12.5□□□□□ -0.41
USP3-206ENST00000558157 SETDB2Q96T68 719 aa12.5□□□□□ -0.41
USP3-206ENST00000558157 PARD6BQ9BYG5 372 aa12.5□□□□□ -0.41
USP3-206ENST00000558157 TFCP2L1Q9NZI6 479 aa12.5□□□□□ -0.41
USP3-206ENST00000558157 RCOR1Q9UKL0 485 aa12.5□□□□□ -0.41
USP3-206ENST00000558157 ABCC12Q96J65 1359 aa12.5□□□□□ -0.41
USP3-206ENST00000558157 CCDC196A0A1B0GTZ2 297 aa12.49□□□□□ -0.41
USP3-206ENST00000558157 GLRX3O76003 335 aaKnown RBP12.49□□□□□ -0.41
USP3-206ENST00000558157 SASH1O94885 1247 aa12.49□□□□□ -0.41
USP3-206ENST00000558157 TUBBP07437 444 aa12.49□□□□□ -0.41
USP3-206ENST00000558157 CPA1P15085 419 aa12.49□□□□□ -0.41
USP3-206ENST00000558157 USP8P40818 1118 aa12.49□□□□□ -0.41
USP3-206ENST00000558157 USP5P45974 858 aa12.49□□□□□ -0.41
USP3-206ENST00000558157 PPP2R3AQ06190 1150 aa12.49□□□□□ -0.41
USP3-206ENST00000558157 ADCK5Q3MIX3 580 aa12.49□□□□□ -0.41
USP3-206ENST00000558157 ERFEQ4G0M1 354 aa12.49□□□□□ -0.41
USP3-206ENST00000558157 CWC27Q6UX04 472 aaKnown RBP12.49□□□□□ -0.41
USP3-206ENST00000558157 CHMP4CQ96CF2 233 aa12.49□□□□□ -0.41
USP3-206ENST00000558157 GREM2Q9H772 168 aa12.49□□□□□ -0.41
USP3-206ENST00000558157 MED4Q9NPJ6 270 aa12.49□□□□□ -0.41
USP3-206ENST00000558157 MRFAP1Q9Y605 127 aa12.49□□□□□ -0.41
USP3-206ENST00000558157 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP12.49□□□□□ -0.41
USP3-206ENST00000558157 LRP5O75197 1615 aa12.49□□□□□ -0.41
USP3-206ENST00000558157 A0A087WUV0 522 aaPredicted RBP12.49□□□□□ -0.41
USP3-206ENST00000558157 H3BQF6 201 aa12.49□□□□□ -0.41
USP3-206ENST00000558157 ERLIN1O75477 346 aa12.49□□□□□ -0.41
USP3-206ENST00000558157 GYS1P13807 737 aa12.49□□□□□ -0.41
USP3-206ENST00000558157 CCDC57Q2TAC2 916 aa12.49□□□□□ -0.41
USP3-206ENST00000558157 PRPF40BQ6NWY9 871 aaKnown RBP12.49□□□□□ -0.41
USP3-206ENST00000558157 XPO4Q9C0E2 1151 aaKnown RBP12.49□□□□□ -0.41
USP3-206ENST00000558157 CXorf56Q9H5V9 222 aa12.49□□□□□ -0.41
USP3-206ENST00000558157 BCCIPQ9P287 314 aaKnown RBP eCLIP12.49□□□□□ -0.41
USP3-206ENST00000558157 CCAR1Q8IX12 1150 aaKnown RBP12.48□□□□□ -0.41
USP3-206ENST00000558157 CEP120Q8N960 986 aa12.48□□□□□ -0.41
USP3-206ENST00000558157 BANK1Q8NDB2 785 aa12.48□□□□□ -0.41
USP3-206ENST00000558157 ENGASEQ8NFI3 743 aa12.48□□□□□ -0.41
USP3-206ENST00000558157 SPEF2Q9C093 1822 aa12.48□□□□□ -0.41
USP3-206ENST00000558157 CARMIL3Q8ND23 1372 aa12.48□□□□□ -0.41
USP3-206ENST00000558157 TNRC6CQ9HCJ0 1690 aaKnown RBP12.48□□□□□ -0.41
USP3-206ENST00000558157 HIP1O00291 1037 aa12.48□□□□□ -0.41
USP3-206ENST00000558157 MYO1BO43795 1136 aa12.48□□□□□ -0.41
USP3-206ENST00000558157 ITGA6P23229 1130 aa12.48□□□□□ -0.41
USP3-206ENST00000558157 SF3B2Q13435 895 aaKnown RBP12.48□□□□□ -0.41
USP3-206ENST00000558157 NFIXQ14938 502 aa12.48□□□□□ -0.41
USP3-206ENST00000558157 CT47A1Q5JQC4 288 aaPredicted RBP12.48□□□□□ -0.41
USP3-206ENST00000558157 NBPF5PQ86XG9 351 aaPredicted RBP12.48□□□□□ -0.41
USP3-206ENST00000558157 FAM71BQ8TC56 605 aa12.48□□□□□ -0.41
USP3-206ENST00000558157 DDX11Q96FC9 970 aa12.48□□□□□ -0.41
USP3-206ENST00000558157 TOMM22Q9NS69 142 aa12.48□□□□□ -0.41
USP3-206ENST00000558157 CBFA2T2O43439 604 aa12.47□□□□□ -0.41
USP3-206ENST00000558157 PPFIA4O75335 1185 aa12.47□□□□□ -0.41
USP3-206ENST00000558157 IFIT5Q13325 482 aaKnown RBP12.47□□□□□ -0.41
USP3-206ENST00000558157 TUBB2AQ13885 445 aa12.47□□□□□ -0.41
USP3-206ENST00000558157 TADA2BQ86TJ2 420 aa12.47□□□□□ -0.41
USP3-206ENST00000558157 TUBB2BQ9BVA1 445 aa12.47□□□□□ -0.41
USP3-206ENST00000558157 NYXQ9GZU5 481 aa12.47□□□□□ -0.41
Retrieved 100 of 20,778 RNA–protein pairs in 51 ms