RNA–Protein interactions for RNA: ENST00000553403.1

CCDC88C-205, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 1 (best) BASIC

Gene CCDC88C, Length 1,651 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-205ENST00000553403 SP8Q8IXZ3 490 aa30.83■■■□□ 2.53
CCDC88C-205ENST00000553403 ANKRD31Q8N7Z5 1873 aa30.82■■■□□ 2.52
CCDC88C-205ENST00000553403 LDHBP07195 334 aaKnown RBP30.82■■■□□ 2.52
CCDC88C-205ENST00000553403 ATP8A2Q9NTI2 1148 aa30.82■■■□□ 2.52
CCDC88C-205ENST00000553403 MINDY4BA8MYZ0 360 aa30.81■■■□□ 2.52
CCDC88C-205ENST00000553403 ZBTB43O43298 467 aa30.81■■■□□ 2.52
CCDC88C-205ENST00000553403 CDKL5O76039 1030 aa30.81■■■□□ 2.52
CCDC88C-205ENST00000553403 IL1R1P14778 569 aa30.81■■■□□ 2.52
CCDC88C-205ENST00000553403 GSTO1P78417 241 aa30.81■■■□□ 2.52
CCDC88C-205ENST00000553403 NFXL1Q6ZNB6 911 aa30.81■■■□□ 2.52
CCDC88C-205ENST00000553403 CD209Q9NNX6 404 aa30.81■■■□□ 2.52
CCDC88C-205ENST00000553403 PPEF1O14829 653 aaPredicted RBP30.81■■■□□ 2.52
CCDC88C-205ENST00000553403 CPLX2Q6PUV4 134 aaKnown RBP30.81■■■□□ 2.52
CCDC88C-205ENST00000553403 TMTC2Q8N394 836 aa30.81■■■□□ 2.52
CCDC88C-205ENST00000553403 ORC3Q9UBD5 711 aaPredicted RBP30.81■■■□□ 2.52
CCDC88C-205ENST00000553403 NID2Q14112 1375 aa30.8■■■□□ 2.52
CCDC88C-205ENST00000553403 FGRP09769 529 aa30.8■■■□□ 2.52
CCDC88C-205ENST00000553403 RRP12Q5JTH9 1297 aaKnown RBP30.8■■■□□ 2.52
CCDC88C-205ENST00000553403 FAM173BQ6P4H8 233 aa30.8■■■□□ 2.52
CCDC88C-205ENST00000553403 TBC1D16Q8TBP0 767 aa30.8■■■□□ 2.52
CCDC88C-205ENST00000553403 TOMM22Q9NS69 142 aa30.8■■■□□ 2.52
CCDC88C-205ENST00000553403 AATFQ9NY61 560 aaKnown RBP eCLIP30.8■■■□□ 2.52
CCDC88C-205ENST00000553403 CCDC69A6NI79 296 aa30.79■■■□□ 2.52
CCDC88C-205ENST00000553403 NPR1P16066 1061 aa30.79■■■□□ 2.52
CCDC88C-205ENST00000553403 CTR9Q6PD62 1173 aa30.79■■■□□ 2.52
CCDC88C-205ENST00000553403 TTC6Q86TZ1 520 aa30.79■■■□□ 2.52
CCDC88C-205ENST00000553403 ESR2Q92731 530 aa30.79■■■□□ 2.52
CCDC88C-205ENST00000553403 GPR101Q96P66 508 aaPredicted RBP30.79■■■□□ 2.52
CCDC88C-205ENST00000553403 SENP2Q9HC62 589 aa30.79■■■□□ 2.52
CCDC88C-205ENST00000553403 PARP3Q9Y6F1 533 aa30.79■■■□□ 2.52
CCDC88C-205ENST00000553403 LTBP1Q14766 1721 aa30.79■■■□□ 2.52
CCDC88C-205ENST00000553403 ERICH2A1L162 156 aa30.78■■■□□ 2.52
CCDC88C-205ENST00000553403 ATL3Q6DD88 541 aa30.78■■■□□ 2.52
CCDC88C-205ENST00000553403 SYNE3Q6ZMZ3 975 aa30.78■■■□□ 2.52
CCDC88C-205ENST00000553403 ATP6V0A2Q9Y487 856 aa30.78■■■□□ 2.52
CCDC88C-205ENST00000553403 SLC12A7Q9Y666 1083 aa30.78■■■□□ 2.52
CCDC88C-205ENST00000553403 SRGNP10124 158 aa30.78■■■□□ 2.52
CCDC88C-205ENST00000553403 PDE6BP35913 854 aa30.78■■■□□ 2.52
CCDC88C-205ENST00000553403 RCAN1P53805 252 aa30.78■■■□□ 2.52
CCDC88C-205ENST00000553403 SBK1Q52WX2 424 aa30.78■■■□□ 2.52
CCDC88C-205ENST00000553403 LRSAM1Q6UWE0 723 aa30.78■■■□□ 2.52
CCDC88C-205ENST00000553403 RAB11FIP4Q86YS3 637 aa30.78■■■□□ 2.52
CCDC88C-205ENST00000553403 POLLQ9UGP5 575 aa30.78■■■□□ 2.52
CCDC88C-205ENST00000553403 JAG2Q9Y219 1238 aa30.78■■■□□ 2.52
CCDC88C-205ENST00000553403 GOLGA8AA7E2F4 631 aa30.77■■■□□ 2.52
CCDC88C-205ENST00000553403 LDHCP07864 332 aa30.77■■■□□ 2.52
CCDC88C-205ENST00000553403 WTAPQ15007 396 aa30.77■■■□□ 2.52
CCDC88C-205ENST00000553403 KLHL34Q8N239 644 aa30.77■■■□□ 2.52
CCDC88C-205ENST00000553403 DCP1AQ9NPI6 582 aaPredicted RBP30.77■■■□□ 2.52
CCDC88C-205ENST00000553403 CFAP45Q9UL16 551 aa30.77■■■□□ 2.52
CCDC88C-205ENST00000553403 ZBTB7AO95365 584 aa30.76■■■□□ 2.51
CCDC88C-205ENST00000553403 MMP10P09238 476 aa30.76■■■□□ 2.51
CCDC88C-205ENST00000553403 CCDC183Q5T5S1 534 aa30.76■■■□□ 2.51
CCDC88C-205ENST00000553403 SPATA32Q96LK8 384 aa30.76■■■□□ 2.51
CCDC88C-205ENST00000553403 LEO1Q8WVC0 666 aaPredicted RBP30.75■■■□□ 2.51
CCDC88C-205ENST00000553403 C8orf76Q96K31 380 aa30.75■■■□□ 2.51
CCDC88C-205ENST00000553403 ARPP21Q9UBL0 812 aaPredicted RBP30.75■■■□□ 2.51
CCDC88C-205ENST00000553403 USP17L12C9JPN9 530 aa30.74■■■□□ 2.51
CCDC88C-205ENST00000553403 USP17L21D6R901 530 aa30.74■■■□□ 2.51
CCDC88C-205ENST00000553403 LETM1O95202 739 aaPredicted RBP30.74■■■□□ 2.51
CCDC88C-205ENST00000553403 ALDH1B1P30837 517 aa30.74■■■□□ 2.51
CCDC88C-205ENST00000553403 ADD1P35611 737 aaKnown RBP30.74■■■□□ 2.51
CCDC88C-205ENST00000553403 PPP4CP60510 307 aa30.74■■■□□ 2.51
CCDC88C-205ENST00000553403 MICU3Q86XE3 530 aa30.74■■■□□ 2.51
CCDC88C-205ENST00000553403 CERS3Q8IU89 383 aa30.74■■■□□ 2.51
CCDC88C-205ENST00000553403 UBAC1Q9BSL1 405 aa30.74■■■□□ 2.51
CCDC88C-205ENST00000553403 PDGFDQ9GZP0 370 aaPredicted RBP30.74■■■□□ 2.51
CCDC88C-205ENST00000553403 TFIP11Q9UBB9 837 aaKnown RBP30.74■■■□□ 2.51
CCDC88C-205ENST00000553403 BAZ2AQ9UIF9 1905 aaKnown RBP30.74■■■□□ 2.51
CCDC88C-205ENST00000553403 SYCE3A1L190 88 aa30.74■■■□□ 2.51
CCDC88C-205ENST00000553403 CDC27P30260 824 aa30.74■■■□□ 2.51
CCDC88C-205ENST00000553403 FOSBP53539 338 aa30.74■■■□□ 2.51
CCDC88C-205ENST00000553403 BAG3O95817 575 aa30.73■■■□□ 2.51
CCDC88C-205ENST00000553403 SLC3A2P08195 630 aaKnown RBP30.73■■■□□ 2.51
CCDC88C-205ENST00000553403 FBXO18Q8NFZ0 1043 aa30.73■■■□□ 2.51
CCDC88C-205ENST00000553403 FAM217BQ9NTX9 383 aaPredicted RBP30.73■■■□□ 2.51
CCDC88C-205ENST00000553403 LAMB1P07942 1786 aa30.73■■■□□ 2.51
CCDC88C-205ENST00000553403 C6orf229H3BNL8 230 aa30.72■■■□□ 2.51
CCDC88C-205ENST00000553403 ORC4O43929 436 aa30.72■■■□□ 2.51
CCDC88C-205ENST00000553403 PPFIA3O75145 1194 aa30.72■■■□□ 2.51
CCDC88C-205ENST00000553403 NTRK3Q16288 839 aa30.72■■■□□ 2.51
CCDC88C-205ENST00000553403 TBC1D22AQ8WUA7 517 aa30.72■■■□□ 2.51
CCDC88C-205ENST00000553403 ZNF396Q96N95 335 aaPredicted RBP30.72■■■□□ 2.51
CCDC88C-205ENST00000553403 ATF5Q9Y2D1 282 aaPredicted RBP30.72■■■□□ 2.51
CCDC88C-205ENST00000553403 DDX52Q9Y2R4 599 aaKnown RBP eCLIP30.72■■■□□ 2.51
CCDC88C-205ENST00000553403 STK36Q9NRP7 1315 aa30.72■■■□□ 2.51
CCDC88C-205ENST00000553403 MYH15Q9Y2K3 1946 aa30.72■■■□□ 2.51
CCDC88C-205ENST00000553403 NT5C2P49902 561 aa30.71■■■□□ 2.51
CCDC88C-205ENST00000553403 SEC23AQ15436 765 aa30.71■■■□□ 2.51
CCDC88C-205ENST00000553403 STK11IPQ8N1F8 1099 aa30.71■■■□□ 2.51
CCDC88C-205ENST00000553403 MASTLQ96GX5 879 aa30.71■■■□□ 2.51
CCDC88C-205ENST00000553403 NOL10Q9BSC4 688 aaKnown RBP30.71■■■□□ 2.51
CCDC88C-205ENST00000553403 CYP2D7A0A087X1C5 515 aa30.71■■■□□ 2.51
CCDC88C-205ENST00000553403 ZKSCAN3Q9BRR0 538 aa30.71■■■□□ 2.51
CCDC88C-205ENST00000553403 MROH7-TTC4A0A0A0MT08 1334 aa30.71■■■□□ 2.51
CCDC88C-205ENST00000553403 FAM205AQ6ZU69 1335 aa30.71■■■□□ 2.51
CCDC88C-205ENST00000553403 RXRAP19793 462 aa30.7■■■□□ 2.5
CCDC88C-205ENST00000553403 GUCY1B3Q02153 619 aa30.7■■■□□ 2.5
CCDC88C-205ENST00000553403 IARSP41252 1262 aaKnown RBP30.69■■■□□ 2.5
CCDC88C-205ENST00000553403 GRIK5Q16478 980 aa30.69■■■□□ 2.5
Retrieved 100 of 20,778 RNA–protein pairs in 54.1 ms