RNA–Protein interactions for RNA: ENST00000553340.1

SYNE3-202, Transcript of spectrin repeat containing nuclear envelope family member 3, humanhuman

TSL 1 (best) BASIC

Gene SYNE3, Length 2,615 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE3-202ENST00000553340 SEC31AO94979 1220 aaKnown RBP20.12■□□□□ 0.81
SYNE3-202ENST00000553340 CHRNA2Q15822 529 aa20.12■□□□□ 0.81
SYNE3-202ENST00000553340 NTRK3Q16288 839 aa20.12■□□□□ 0.81
SYNE3-202ENST00000553340 SLC9C2Q5TAH2 1124 aa20.12■□□□□ 0.81
SYNE3-202ENST00000553340 WDR24Q96S15 920 aa20.12■□□□□ 0.81
SYNE3-202ENST00000553340 GOLGA8AA7E2F4 631 aa20.11■□□□□ 0.81
SYNE3-202ENST00000553340 MDM2Q00987 491 aaPredicted RBP20.11■□□□□ 0.81
SYNE3-202ENST00000553340 IFIT5Q13325 482 aaKnown RBP20.11■□□□□ 0.81
SYNE3-202ENST00000553340 CCDC85AQ96PX6 553 aaPredicted RBP20.11■□□□□ 0.81
SYNE3-202ENST00000553340 NFE2L3Q9Y4A8 694 aa20.11■□□□□ 0.81
SYNE3-202ENST00000553340 B4E1Z4 1266 aa20.11■□□□□ 0.81
SYNE3-202ENST00000553340 PPP2R3AQ06190 1150 aa20.11■□□□□ 0.81
SYNE3-202ENST00000553340 HSP90AA4PQ58FG1 418 aa20.11■□□□□ 0.81
SYNE3-202ENST00000553340 TC2NQ8N9U0 490 aa20.11■□□□□ 0.81
SYNE3-202ENST00000553340 MLKLQ8NB16 471 aa20.11■□□□□ 0.81
SYNE3-202ENST00000553340 MRFAP1Q9Y605 127 aa20.11■□□□□ 0.81
SYNE3-202ENST00000553340 POLR3GO15318 223 aaPredicted RBP20.1■□□□□ 0.81
SYNE3-202ENST00000553340 FOXN1O15353 648 aa20.1■□□□□ 0.81
SYNE3-202ENST00000553340 MCAMP43121 646 aa20.1■□□□□ 0.81
SYNE3-202ENST00000553340 POSTNQ15063 836 aa20.1■□□□□ 0.81
SYNE3-202ENST00000553340 CC2D1AQ6P1N0 951 aaPredicted RBP20.1■□□□□ 0.81
SYNE3-202ENST00000553340 PROSER2Q86WR7 435 aaPredicted RBP20.1■□□□□ 0.81
SYNE3-202ENST00000553340 NKX2-3Q8TAU0 364 aa20.1■□□□□ 0.81
SYNE3-202ENST00000553340 SENP2Q9HC62 589 aa20.1■□□□□ 0.81
SYNE3-202ENST00000553340 MAN1B1Q9UKM7 699 aa20.1■□□□□ 0.81
SYNE3-202ENST00000553340 MAP3K15Q6ZN16 1313 aa20.1■□□□□ 0.81
SYNE3-202ENST00000553340 UBN2Q6ZU65 1347 aa20.1■□□□□ 0.81
SYNE3-202ENST00000553340 PARP4Q9UKK3 1724 aaKnown RBP20.1■□□□□ 0.81
SYNE3-202ENST00000553340 RANBP6O60518 1105 aaKnown RBP20.1■□□□□ 0.81
SYNE3-202ENST00000553340 TCIRG1Q13488 830 aa20.1■□□□□ 0.81
SYNE3-202ENST00000553340 TTF1Q15361 905 aaPredicted RBP20.1■□□□□ 0.81
SYNE3-202ENST00000553340 SGMS1Q86VZ5 419 aa20.1■□□□□ 0.81
SYNE3-202ENST00000553340 ENOX1Q8TC92 643 aaKnown RBP20.1■□□□□ 0.81
SYNE3-202ENST00000553340 IGDCC4Q8TDY8 1250 aa20.1■□□□□ 0.81
SYNE3-202ENST00000553340 ZNF18P17022 549 aa20.09■□□□□ 0.81
SYNE3-202ENST00000553340 TRHP20396 242 aaPredicted RBP20.09■□□□□ 0.81
SYNE3-202ENST00000553340 ADKP55263 362 aaKnown RBP20.09■□□□□ 0.81
SYNE3-202ENST00000553340 SSRP1Q08945 709 aaKnown RBP20.09■□□□□ 0.81
SYNE3-202ENST00000553340 TOGARAM2Q6ZUX3 1019 aa20.09■□□□□ 0.81
SYNE3-202ENST00000553340 NOSTRINQ8IVI9 506 aa20.09■□□□□ 0.81
SYNE3-202ENST00000553340 UBXN6Q9BZV1 441 aa20.09■□□□□ 0.81
SYNE3-202ENST00000553340 TBC1D8O95759 1140 aa20.09■□□□□ 0.81
SYNE3-202ENST00000553340 METTL24Q5JXM2 366 aa20.09■□□□□ 0.81
SYNE3-202ENST00000553340 SPECC1Q5M775 1068 aa20.09■□□□□ 0.81
SYNE3-202ENST00000553340 WASF1Q92558 559 aa20.09■□□□□ 0.81
SYNE3-202ENST00000553340 SLC26A6Q9BXS9 759 aa20.09■□□□□ 0.81
SYNE3-202ENST00000553340 EPC1Q9H2F5 836 aa20.09■□□□□ 0.81
SYNE3-202ENST00000553340 STK36Q9NRP7 1315 aa20.09■□□□□ 0.81
SYNE3-202ENST00000553340 ZNF142P52746 1687 aaPredicted RBP20.09■□□□□ 0.81
SYNE3-202ENST00000553340 ATRNO75882 1429 aa20.09■□□□□ 0.81
SYNE3-202ENST00000553340 UBE3CQ15386 1083 aa20.08■□□□□ 0.81
SYNE3-202ENST00000553340 SAFBQ15424 915 aaKnown RBP eCLIP20.08■□□□□ 0.81
SYNE3-202ENST00000553340 TMEM67Q5HYA8 995 aa20.08■□□□□ 0.81
SYNE3-202ENST00000553340 NT5DC1Q5TFE4 455 aa20.08■□□□□ 0.81
SYNE3-202ENST00000553340 RSRC2Q7L4I2 434 aaKnown RBP20.08■□□□□ 0.81
SYNE3-202ENST00000553340 CABLES1Q8TDN4 633 aa20.08■□□□□ 0.81
SYNE3-202ENST00000553340 RABGGTAQ92696 567 aa20.08■□□□□ 0.81
SYNE3-202ENST00000553340 LY9Q9HBG7 655 aa20.08■□□□□ 0.81
SYNE3-202ENST00000553340 ARFGAP3Q9NP61 516 aa20.08■□□□□ 0.81
SYNE3-202ENST00000553340 FAM217BQ9NTX9 383 aaPredicted RBP20.08■□□□□ 0.81
SYNE3-202ENST00000553340 FMR1Q06787 632 aaKnown RBP eCLIP20.08■□□□□ 0.8
SYNE3-202ENST00000553340 NUTM2AQ8IVF1 878 aaPredicted RBP20.08■□□□□ 0.8
SYNE3-202ENST00000553340 STK11IPQ8N1F8 1099 aa20.08■□□□□ 0.8
SYNE3-202ENST00000553340 SMARCE1Q969G3 411 aa20.08■□□□□ 0.8
SYNE3-202ENST00000553340 A0A0U1RQG5 324 aaPredicted RBP20.07■□□□□ 0.8
SYNE3-202ENST00000553340 ERVV-2B6SEH9 535 aa20.07■□□□□ 0.8
SYNE3-202ENST00000553340 CSF1RP07333 972 aa20.07■□□□□ 0.8
SYNE3-202ENST00000553340 KIFC2Q96AC6 838 aa20.07■□□□□ 0.8
SYNE3-202ENST00000553340 FAM89AQ96GI7 184 aa20.07■□□□□ 0.8
SYNE3-202ENST00000553340 MYL10Q9BUA6 226 aa20.07■□□□□ 0.8
SYNE3-202ENST00000553340 PLA2G12BQ9BX93 195 aa20.07■□□□□ 0.8
SYNE3-202ENST00000553340 SLC12A7Q9Y666 1083 aa20.07■□□□□ 0.8
SYNE3-202ENST00000553340 ECM29Q5VYK3 1845 aa20.07■□□□□ 0.8
SYNE3-202ENST00000553340 IDH1O75874 414 aaKnown RBP20.07■□□□□ 0.8
SYNE3-202ENST00000553340 SASH3O75995 380 aa20.07■□□□□ 0.8
SYNE3-202ENST00000553340 PCCAP05165 728 aaPredicted RBP20.07■□□□□ 0.8
SYNE3-202ENST00000553340 TRIML1Q8N9V2 468 aa20.07■□□□□ 0.8
SYNE3-202ENST00000553340 RAI14Q9P0K7 980 aa20.07■□□□□ 0.8
SYNE3-202ENST00000553340 POLR2DO15514 142 aaKnown RBP20.06■□□□□ 0.8
SYNE3-202ENST00000553340 FMNL1O95466 1100 aaPredicted RBP20.06■□□□□ 0.8
SYNE3-202ENST00000553340 PTPREP23469 700 aa20.06■□□□□ 0.8
SYNE3-202ENST00000553340 LIFRP42702 1097 aa20.06■□□□□ 0.8
SYNE3-202ENST00000553340 SARSP49591 514 aaKnown RBP20.06■□□□□ 0.8
SYNE3-202ENST00000553340 TRIM28Q13263 835 aaKnown RBP20.06■□□□□ 0.8
SYNE3-202ENST00000553340 MORC3Q14149 939 aa20.06■□□□□ 0.8
SYNE3-202ENST00000553340 GOLGA1Q92805 767 aa20.06■□□□□ 0.8
SYNE3-202ENST00000553340 ZNF512BQ96KM6 892 aaPredicted RBP20.06■□□□□ 0.8
SYNE3-202ENST00000553340 PCDH11XQ9BZA7 1347 aa20.06■□□□□ 0.8
SYNE3-202ENST00000553340 PCDH11YQ9BZA8 1340 aa20.06■□□□□ 0.8
SYNE3-202ENST00000553340 UBR2Q8IWV8 1755 aa20.06■□□□□ 0.8
SYNE3-202ENST00000553340 ADAMTSL3P82987 1691 aa20.06■□□□□ 0.8
SYNE3-202ENST00000553340 BTBD18B2RXH4 712 aa20.06■□□□□ 0.8
SYNE3-202ENST00000553340 OAS2P29728 719 aaKnown RBP20.06■□□□□ 0.8
SYNE3-202ENST00000553340 HNRNPH2P55795 449 aaKnown RBP20.06■□□□□ 0.8
SYNE3-202ENST00000553340 SMC1AQ14683 1233 aaKnown RBP20.06■□□□□ 0.8
SYNE3-202ENST00000553340 PARD6BQ9BYG5 372 aa20.06■□□□□ 0.8
SYNE3-202ENST00000553340 SERTAD1Q9UHV2 236 aa20.06■□□□□ 0.8
SYNE3-202ENST00000553340 ZNF532Q9HCE3 1301 aa20.06■□□□□ 0.8
SYNE3-202ENST00000553340 UBE2Q2LH0YL09 131 aa20.06■□□□□ 0.8
SYNE3-202ENST00000553340 RILPL1Q5EBL4 403 aa20.06■□□□□ 0.8
Retrieved 100 of 20,778 RNA–protein pairs in 27.7 ms