RNA–Protein interactions for RNA: ENST00000552491.5

LIMA1-212, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS ALT2 TSL 2 BASIC

Gene LIMA1, Length 2,652 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-212ENST00000552491 PDE4BQ07343 736 aa6.26□□□□□ -1.41
LIMA1-212ENST00000552491 SLC39A14Q15043 492 aa6.26□□□□□ -1.41
LIMA1-212ENST00000552491 PTPAQ15257 358 aa6.26□□□□□ -1.41
LIMA1-212ENST00000552491 WASHC4Q2M389 1173 aa6.26□□□□□ -1.41
LIMA1-212ENST00000552491 HSP90AA4PQ58FG1 418 aa6.26□□□□□ -1.41
LIMA1-212ENST00000552491 BRAPQ7Z569 592 aa6.26□□□□□ -1.41
LIMA1-212ENST00000552491 METTL16Q86W50 562 aaKnown RBP6.26□□□□□ -1.41
LIMA1-212ENST00000552491 CCDC85AQ96PX6 553 aaPredicted RBP6.26□□□□□ -1.41
LIMA1-212ENST00000552491 UTP14AQ9BVJ6 771 aaKnown RBP6.26□□□□□ -1.41
LIMA1-212ENST00000552491 ZBTB3Q9H5J0 574 aa6.26□□□□□ -1.41
LIMA1-212ENST00000552491 ECM29Q5VYK3 1845 aa6.26□□□□□ -1.41
LIMA1-212ENST00000552491 VWA3AA6NCI4 1184 aa6.26□□□□□ -1.41
LIMA1-212ENST00000552491 IKBKBO14920 756 aa6.26□□□□□ -1.41
LIMA1-212ENST00000552491 TADA3O75528 432 aa6.26□□□□□ -1.41
LIMA1-212ENST00000552491 ZAP70P43403 619 aa6.26□□□□□ -1.41
LIMA1-212ENST00000552491 SYKP43405 635 aa6.26□□□□□ -1.41
LIMA1-212ENST00000552491 UBASH3AP57075 661 aa6.26□□□□□ -1.41
LIMA1-212ENST00000552491 FAM193AP78312 1265 aa6.26□□□□□ -1.41
LIMA1-212ENST00000552491 ZRSR1Q15695 479 aaKnown RBP6.26□□□□□ -1.41
LIMA1-212ENST00000552491 IMMTQ16891 758 aaKnown RBP6.26□□□□□ -1.41
LIMA1-212ENST00000552491 SYNE3Q6ZMZ3 975 aa6.26□□□□□ -1.41
LIMA1-212ENST00000552491 VPS37DQ86XT2 251 aa6.26□□□□□ -1.41
LIMA1-212ENST00000552491 HOMER1Q86YM7 354 aa6.26□□□□□ -1.41
LIMA1-212ENST00000552491 CABLES1Q8TDN4 633 aa6.26□□□□□ -1.41
LIMA1-212ENST00000552491 PHKBQ93100 1093 aa6.26□□□□□ -1.41
LIMA1-212ENST00000552491 XAGE2Q96GT9 111 aa6.26□□□□□ -1.41
LIMA1-212ENST00000552491 DCAF5Q96JK2 942 aa6.26□□□□□ -1.41
LIMA1-212ENST00000552491 FANCLQ9NW38 375 aa6.26□□□□□ -1.41
LIMA1-212ENST00000552491 CWC25Q9NXE8 425 aaPredicted RBP6.26□□□□□ -1.41
LIMA1-212ENST00000552491 PARP3Q9Y6F1 533 aa6.26□□□□□ -1.41
LIMA1-212ENST00000552491 SPEF2Q9C093 1822 aa6.25□□□□□ -1.41
LIMA1-212ENST00000552491 CPLX1O14810 134 aa6.25□□□□□ -1.41
LIMA1-212ENST00000552491 NRDCO43847 1150 aa6.25□□□□□ -1.41
LIMA1-212ENST00000552491 SASH3O75995 380 aa6.25□□□□□ -1.41
LIMA1-212ENST00000552491 TPM4P67936 248 aa6.25□□□□□ -1.41
LIMA1-212ENST00000552491 BMS1Q14692 1282 aaKnown RBP6.25□□□□□ -1.41
LIMA1-212ENST00000552491 CHRNA2Q15822 529 aa6.25□□□□□ -1.41
LIMA1-212ENST00000552491 LONRF3Q496Y0 759 aa6.25□□□□□ -1.41
LIMA1-212ENST00000552491 SPECC1Q5M775 1068 aa6.25□□□□□ -1.41
LIMA1-212ENST00000552491 KRT40Q6A162 431 aa6.25□□□□□ -1.41
LIMA1-212ENST00000552491 CYB5R4Q7L1T6 521 aa6.25□□□□□ -1.41
LIMA1-212ENST00000552491 ANKLE2Q86XL3 938 aa6.25□□□□□ -1.41
LIMA1-212ENST00000552491 TBC1D10CQ8IV04 446 aa6.25□□□□□ -1.41
LIMA1-212ENST00000552491 VSTM4Q8IW00 320 aa6.25□□□□□ -1.41
LIMA1-212ENST00000552491 WDR24Q96S15 920 aa6.25□□□□□ -1.41
LIMA1-212ENST00000552491 MAP3K14Q99558 947 aa6.25□□□□□ -1.41
LIMA1-212ENST00000552491 CARD6Q9BX69 1037 aa6.25□□□□□ -1.41
LIMA1-212ENST00000552491 INCENPQ9NQS7 918 aa6.25□□□□□ -1.41
LIMA1-212ENST00000552491 LAMB4A4D0S4 1761 aa6.25□□□□□ -1.41
LIMA1-212ENST00000552491 COL18A1P39060 1754 aa6.25□□□□□ -1.41
LIMA1-212ENST00000552491 PHLPP2Q6ZVD8 1323 aa6.25□□□□□ -1.41
LIMA1-212ENST00000552491 KIF1AQ12756 1690 aa6.25□□□□□ -1.41
LIMA1-212ENST00000552491 AKAP11Q9UKA4 1901 aa6.25□□□□□ -1.41
LIMA1-212ENST00000552491 GPAA1O43292 621 aa6.25□□□□□ -1.41
LIMA1-212ENST00000552491 URI1O94763 535 aaPredicted RBP6.25□□□□□ -1.41
LIMA1-212ENST00000552491 CABP4P57796 275 aa6.25□□□□□ -1.41
LIMA1-212ENST00000552491 MYL5Q02045 173 aa6.25□□□□□ -1.41
LIMA1-212ENST00000552491 GRIN1Q05586 938 aa6.25□□□□□ -1.41
LIMA1-212ENST00000552491 CFAP100Q494V2 611 aa6.25□□□□□ -1.41
LIMA1-212ENST00000552491 FAM177A1Q8N128 213 aaPredicted RBP6.25□□□□□ -1.41
LIMA1-212ENST00000552491 NCOA7Q8NI08 942 aa6.25□□□□□ -1.41
LIMA1-212ENST00000552491 MED15Q96RN5 788 aa6.25□□□□□ -1.41
LIMA1-212ENST00000552491 ALG1Q9BT22 464 aa6.25□□□□□ -1.41
LIMA1-212ENST00000552491 MYH7P12883 1935 aa6.25□□□□□ -1.41
LIMA1-212ENST00000552491 CPDO75976 1380 aa6.25□□□□□ -1.41
LIMA1-212ENST00000552491 DHX16O60231 1041 aaKnown RBP6.24□□□□□ -1.41
LIMA1-212ENST00000552491 RANBP6O60518 1105 aaKnown RBP6.24□□□□□ -1.41
LIMA1-212ENST00000552491 CIAO1O76071 339 aa6.24□□□□□ -1.41
LIMA1-212ENST00000552491 SERPINC1P01008 464 aa6.24□□□□□ -1.41
LIMA1-212ENST00000552491 TTC39AQ5SRH9 613 aa6.24□□□□□ -1.41
LIMA1-212ENST00000552491 PPIL4Q8WUA2 492 aaKnown RBP eCLIP6.24□□□□□ -1.41
LIMA1-212ENST00000552491 APPBP2Q92624 585 aa6.24□□□□□ -1.41
LIMA1-212ENST00000552491 TIGD1Q96MW7 591 aa6.24□□□□□ -1.41
LIMA1-212ENST00000552491 NOL10Q9BSC4 688 aaKnown RBP6.24□□□□□ -1.41
LIMA1-212ENST00000552491 MYL10Q9BUA6 226 aa6.24□□□□□ -1.41
LIMA1-212ENST00000552491 FAM217BQ9NTX9 383 aaPredicted RBP6.24□□□□□ -1.41
LIMA1-212ENST00000552491 PODXL2Q9NZ53 605 aa6.24□□□□□ -1.41
LIMA1-212ENST00000552491 CEP126Q9P2H0 1117 aa6.24□□□□□ -1.41
LIMA1-212ENST00000552491 PCDHA5Q9Y5H7 936 aa6.24□□□□□ -1.41
LIMA1-212ENST00000552491 ALS2Q96Q42 1657 aa6.24□□□□□ -1.41
LIMA1-212ENST00000552491 FAM237AA0A1B0GTK4 181 aa6.24□□□□□ -1.41
LIMA1-212ENST00000552491 ZNF213O14771 459 aa6.24□□□□□ -1.41
LIMA1-212ENST00000552491 CCP110O43303 1012 aa6.24□□□□□ -1.41
LIMA1-212ENST00000552491 CSB-PGBD3P0DP91 1061 aa6.24□□□□□ -1.41
LIMA1-212ENST00000552491 CYP2C19P33261 490 aa6.24□□□□□ -1.41
LIMA1-212ENST00000552491 FMR1Q06787 632 aaKnown RBP eCLIP6.24□□□□□ -1.41
LIMA1-212ENST00000552491 TBX2Q13207 712 aaPredicted RBP6.24□□□□□ -1.41
LIMA1-212ENST00000552491 NTRK3Q16288 839 aa6.24□□□□□ -1.41
LIMA1-212ENST00000552491 RESP18Q5W5W9 173 aa6.24□□□□□ -1.41
LIMA1-212ENST00000552491 TOGARAM2Q6ZUX3 1019 aa6.24□□□□□ -1.41
LIMA1-212ENST00000552491 CREBRFQ8IUR6 639 aa6.24□□□□□ -1.41
LIMA1-212ENST00000552491 SYNE4Q8N205 404 aa6.24□□□□□ -1.41
LIMA1-212ENST00000552491 UBXN4Q92575 508 aa6.24□□□□□ -1.41
LIMA1-212ENST00000552491 ZCCHC17Q9NP64 241 aaKnown RBP6.24□□□□□ -1.41
LIMA1-212ENST00000552491 SEC31BQ9NQW1 1179 aa6.24□□□□□ -1.41
LIMA1-212ENST00000552491 TMEM51Q9NW97 253 aa6.24□□□□□ -1.41
LIMA1-212ENST00000552491 PPP2R2CQ9Y2T4 447 aa6.24□□□□□ -1.41
LIMA1-212ENST00000552491 TACC3Q9Y6A5 838 aa6.24□□□□□ -1.41
LIMA1-212ENST00000552491 ZMYM6O95789 1325 aa6.24□□□□□ -1.41
LIMA1-212ENST00000552491 A0A0U1RQJ8 604 aa6.23□□□□□ -1.41
Retrieved 100 of 20,778 RNA–protein pairs in 40.2 ms