RNA–Protein interactions for RNA: ENST00000550841.1

NEK3-202, Transcript of NIMA related kinase 3, humanhuman

TSL 4

Gene NEK3, Length 569 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEK3-202ENST00000550841 FAM198AQ9UFP1 575 aa25.77■■□□□ 1.72
NEK3-202ENST00000550841 SCAF8Q9UPN6 1271 aaKnown RBP25.77■■□□□ 1.72
NEK3-202ENST00000550841 TCP10Q12799 353 aa25.76■■□□□ 1.71
NEK3-202ENST00000550841 PICALMQ13492 652 aa25.76■■□□□ 1.71
NEK3-202ENST00000550841 MCMDC2Q4G0Z9 681 aa25.76■■□□□ 1.71
NEK3-202ENST00000550841 LCORLQ8N3X6 602 aa25.76■■□□□ 1.71
NEK3-202ENST00000550841 CDCA5Q96FF9 252 aa25.76■■□□□ 1.71
NEK3-202ENST00000550841 DDRGK1Q96HY6 314 aa25.76■■□□□ 1.71
NEK3-202ENST00000550841 STRBPQ96SI9 672 aaKnown RBP25.76■■□□□ 1.71
NEK3-202ENST00000550841 CNTNAP1P78357 1384 aa25.76■■□□□ 1.71
NEK3-202ENST00000550841 CAPN15O75808 1086 aa25.75■■□□□ 1.71
NEK3-202ENST00000550841 MFAP1P55081 439 aaKnown RBP25.75■■□□□ 1.71
NEK3-202ENST00000550841 RUFY2Q8WXA3 655 aa25.75■■□□□ 1.71
NEK3-202ENST00000550841 ATP8A2Q9NTI2 1148 aa25.75■■□□□ 1.71
NEK3-202ENST00000550841 TRAF5O00463 557 aa25.74■■□□□ 1.71
NEK3-202ENST00000550841 GPAA1O43292 621 aa25.74■■□□□ 1.71
NEK3-202ENST00000550841 NMIQ13287 307 aaPredicted RBP25.74■■□□□ 1.71
NEK3-202ENST00000550841 ZSCAN29Q8IWY8 852 aaPredicted RBP25.74■■□□□ 1.71
NEK3-202ENST00000550841 TMEM39BQ9GZU3 492 aa25.74■■□□□ 1.71
NEK3-202ENST00000550841 DHX36Q9H2U1 1008 aaKnown RBP25.74■■□□□ 1.71
NEK3-202ENST00000550841 DDX4Q9NQI0 724 aaKnown RBP25.74■■□□□ 1.71
NEK3-202ENST00000550841 SLC4A4Q9Y6R1 1079 aa25.74■■□□□ 1.71
NEK3-202ENST00000550841 MAPKAPK5Q8IW41 473 aa25.73■■□□□ 1.71
NEK3-202ENST00000550841 OSBPL5Q9H0X9 879 aaPredicted RBP25.73■■□□□ 1.71
NEK3-202ENST00000550841 RPAP1Q9BWH6 1393 aaPredicted RBP25.72■■□□□ 1.71
NEK3-202ENST00000550841 M0R2C6 588 aa25.72■■□□□ 1.71
NEK3-202ENST00000550841 CWC27Q6UX04 472 aaKnown RBP25.72■■□□□ 1.71
NEK3-202ENST00000550841 FAM227BQ96M60 508 aa25.72■■□□□ 1.71
NEK3-202ENST00000550841 TEPSINQ96N21 525 aa25.72■■□□□ 1.71
NEK3-202ENST00000550841 SEC62Q99442 399 aaKnown RBP25.72■■□□□ 1.71
NEK3-202ENST00000550841 FLT1P17948 1338 aa25.71■■□□□ 1.71
NEK3-202ENST00000550841 PATL2C9JE40 543 aaKnown RBP25.71■■□□□ 1.71
NEK3-202ENST00000550841 CHMLP26374 656 aa25.71■■□□□ 1.71
NEK3-202ENST00000550841 VEGFBP49765 207 aa25.71■■□□□ 1.71
NEK3-202ENST00000550841 PRAMEF18Q5VWM3 479 aa25.71■■□□□ 1.71
NEK3-202ENST00000550841 GIMAP6Q6P9H5 292 aa25.71■■□□□ 1.71
NEK3-202ENST00000550841 ZFPM1Q8IX07 1006 aa25.71■■□□□ 1.71
NEK3-202ENST00000550841 A0A0D9SFI3 127 aa25.7■■□□□ 1.7
NEK3-202ENST00000550841 CELF2O95319 508 aaKnown RBP25.7■■□□□ 1.7
NEK3-202ENST00000550841 DEFB115Q30KQ5 88 aa25.7■■□□□ 1.7
NEK3-202ENST00000550841 NBPF12Q5TAG4 269 aaPredicted RBP25.7■■□□□ 1.7
NEK3-202ENST00000550841 CASC1Q6TDU7 716 aa25.7■■□□□ 1.7
NEK3-202ENST00000550841 NACAP1Q9BZK3 213 aa25.7■■□□□ 1.7
NEK3-202ENST00000550841 ZNF408Q9H9D4 720 aa25.7■■□□□ 1.7
NEK3-202ENST00000550841 PPP1R12BO60237 982 aaPredicted RBP25.69■■□□□ 1.7
NEK3-202ENST00000550841 APPP05067 770 aa25.69■■□□□ 1.7
NEK3-202ENST00000550841 FKBP1BP68106 108 aa25.69■■□□□ 1.7
NEK3-202ENST00000550841 DCAF15Q66K64 600 aa25.69■■□□□ 1.7
NEK3-202ENST00000550841 DLK2Q6UY11 383 aa25.69■■□□□ 1.7
NEK3-202ENST00000550841 TTC6Q86TZ1 520 aa25.69■■□□□ 1.7
NEK3-202ENST00000550841 AMOTL1Q8IY63 956 aa25.69■■□□□ 1.7
NEK3-202ENST00000550841 C2orf69Q8N8R5 385 aa25.69■■□□□ 1.7
NEK3-202ENST00000550841 SDR42E1Q8WUS8 393 aa25.69■■□□□ 1.7
NEK3-202ENST00000550841 DCP1AQ9NPI6 582 aaPredicted RBP25.69■■□□□ 1.7
NEK3-202ENST00000550841 COL2A1P02458 1487 aaPredicted RBP25.68■■□□□ 1.7
NEK3-202ENST00000550841 PRKAB2O43741 272 aa25.68■■□□□ 1.7
NEK3-202ENST00000550841 HLA-DOAP06340 250 aa25.68■■□□□ 1.7
NEK3-202ENST00000550841 CSRNP1Q96S65 589 aa25.68■■□□□ 1.7
NEK3-202ENST00000550841 PI4KBQ9UBF8 816 aa25.68■■□□□ 1.7
NEK3-202ENST00000550841 ATRNL1Q5VV63 1379 aa25.68■■□□□ 1.7
NEK3-202ENST00000550841 RAD50Q92878 1312 aa25.67■■□□□ 1.7
NEK3-202ENST00000550841 POLR3DP05423 398 aaPredicted RBP25.67■■□□□ 1.7
NEK3-202ENST00000550841 FMR1Q06787 632 aaKnown RBP eCLIP25.67■■□□□ 1.7
NEK3-202ENST00000550841 ARMC9Q7Z3E5 817 aa25.67■■□□□ 1.7
NEK3-202ENST00000550841 FOXP4Q8IVH2 680 aaPredicted RBP25.67■■□□□ 1.7
NEK3-202ENST00000550841 TRPM7Q96QT4 1865 aa25.67■■□□□ 1.7
NEK3-202ENST00000550841 MCM9Q9NXL9 1143 aa25.67■■□□□ 1.7
NEK3-202ENST00000550841 ABT1Q9ULW3 272 aaKnown RBP25.67■■□□□ 1.7
NEK3-202ENST00000550841 CCDC171Q6TFL3 1326 aa25.66■■□□□ 1.7
NEK3-202ENST00000550841 FOCADQ5VW36 1801 aa25.66■■□□□ 1.7
NEK3-202ENST00000550841 DDTLA6NHG4 134 aaPredicted RBP25.66■■□□□ 1.7
NEK3-202ENST00000550841 GSG1L2A8MUP6 293 aa25.66■■□□□ 1.7
NEK3-202ENST00000550841 FOXN1O15353 648 aa25.66■■□□□ 1.7
NEK3-202ENST00000550841 CST9Q5W186 159 aa25.66■■□□□ 1.7
NEK3-202ENST00000550841 CCDC129Q6ZRS4 1044 aa25.66■■□□□ 1.7
NEK3-202ENST00000550841 SH3BP5LQ7L8J4 393 aa25.66■■□□□ 1.7
NEK3-202ENST00000550841 GBA2Q9HCG7 927 aaPredicted RBP25.66■■□□□ 1.7
NEK3-202ENST00000550841 SAP30BPQ9UHR5 308 aaKnown RBP25.66■■□□□ 1.7
NEK3-202ENST00000550841 PALD1Q9ULE6 856 aa25.66■■□□□ 1.7
NEK3-202ENST00000550841 RASSF10A6NK89 507 aa25.65■■□□□ 1.7
NEK3-202ENST00000550841 CDC45O75419 566 aa25.65■■□□□ 1.7
NEK3-202ENST00000550841 TTLL12Q14166 644 aaPredicted RBP25.65■■□□□ 1.7
NEK3-202ENST00000550841 CDK5RAP2Q96SN8 1893 aa25.65■■□□□ 1.7
NEK3-202ENST00000550841 PCNTO95613 3336 aa25.65■■□□□ 1.7
NEK3-202ENST00000550841 TBC1D12O60347 775 aa25.64■■□□□ 1.7
NEK3-202ENST00000550841 IFNL3Q8IZI9 196 aa25.64■■□□□ 1.7
NEK3-202ENST00000550841 TRIM34Q9BYJ4 488 aa25.64■■□□□ 1.7
NEK3-202ENST00000550841 TAOK2Q9UL54 1235 aa25.64■■□□□ 1.7
NEK3-202ENST00000550841 IREB2P48200 963 aaKnown RBP25.63■■□□□ 1.69
NEK3-202ENST00000550841 TDO2P48775 406 aa25.63■■□□□ 1.69
NEK3-202ENST00000550841 CTCFP49711 727 aaPredicted RBP25.63■■□□□ 1.69
NEK3-202ENST00000550841 ZNF589Q86UQ0 364 aaPredicted RBP25.63■■□□□ 1.69
NEK3-202ENST00000550841 CDAN1Q8IWY9 1227 aa25.63■■□□□ 1.69
NEK3-202ENST00000550841 ZNF341Q9BYN7 854 aa25.63■■□□□ 1.69
NEK3-202ENST00000550841 ARPP21Q9UBL0 812 aaPredicted RBP25.63■■□□□ 1.69
NEK3-202ENST00000550841 HERC5Q9UII4 1024 aaKnown RBP25.63■■□□□ 1.69
NEK3-202ENST00000550841 MYH1P12882 1939 aa25.63■■□□□ 1.69
NEK3-202ENST00000550841 UNCXA6NJT0 531 aa25.62■■□□□ 1.69
NEK3-202ENST00000550841 HSPD1P10809 573 aaKnown RBP25.62■■□□□ 1.69
NEK3-202ENST00000550841 MAP3K10Q02779 954 aa25.62■■□□□ 1.69
Retrieved 100 of 20,778 RNA–protein pairs in 256.1 ms