RNA–Protein interactions for RNA: ENST00000539041.5

SMPDL3A-203, Transcript of sphingomyelin phosphodiesterase acid like 3A, humanhuman

TSL 2 BASIC

Gene SMPDL3A, Length 1,755 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMPDL3A-203ENST00000539041 CDC27P30260 824 aa24.06■■□□□ 1.44
SMPDL3A-203ENST00000539041 WTAPQ15007 396 aa24.06■■□□□ 1.44
SMPDL3A-203ENST00000539041 SYNE3Q6ZMZ3 975 aa24.06■■□□□ 1.44
SMPDL3A-203ENST00000539041 C15orf52Q6ZUT6 534 aaKnown RBP24.06■■□□□ 1.44
SMPDL3A-203ENST00000539041 FAM43AQ8N2R8 423 aa24.06■■□□□ 1.44
SMPDL3A-203ENST00000539041 PRDX5P30044 214 aa24.06■■□□□ 1.44
SMPDL3A-203ENST00000539041 LTBP1Q14766 1721 aa24.06■■□□□ 1.44
SMPDL3A-203ENST00000539041 ILDR1Q86SU0 546 aaPredicted RBP24.06■■□□□ 1.44
SMPDL3A-203ENST00000539041 OTUD7BQ6GQQ9 843 aa24.05■■□□□ 1.44
SMPDL3A-203ENST00000539041 ZNF804AQ7Z570 1209 aa24.05■■□□□ 1.44
SMPDL3A-203ENST00000539041 STK11IPQ8N1F8 1099 aa24.05■■□□□ 1.44
SMPDL3A-203ENST00000539041 TMTC2Q8N394 836 aa24.05■■□□□ 1.44
SMPDL3A-203ENST00000539041 RNF214Q8ND24 703 aa24.05■■□□□ 1.44
SMPDL3A-203ENST00000539041 BICD2Q8TD16 824 aa24.05■■□□□ 1.44
SMPDL3A-203ENST00000539041 USP28Q96RU2 1077 aa24.05■■□□□ 1.44
SMPDL3A-203ENST00000539041 CRNKL1Q9BZJ0 848 aaKnown RBP24.05■■□□□ 1.44
SMPDL3A-203ENST00000539041 NUP62CLQ9H1M0 184 aa24.05■■□□□ 1.44
SMPDL3A-203ENST00000539041 DDX19AQ9NUU7 478 aaKnown RBP24.05■■□□□ 1.44
SMPDL3A-203ENST00000539041 DDR1Q08345 913 aa24.04■■□□□ 1.44
SMPDL3A-203ENST00000539041 NTRK3Q16288 839 aa24.04■■□□□ 1.44
SMPDL3A-203ENST00000539041 TDRD7Q8NHU6 1098 aaKnown RBP24.04■■□□□ 1.44
SMPDL3A-203ENST00000539041 WDR66Q8TBY9 1149 aa24.04■■□□□ 1.44
SMPDL3A-203ENST00000539041 ESR2Q92731 530 aa24.04■■□□□ 1.44
SMPDL3A-203ENST00000539041 FUCA2Q9BTY2 467 aa24.04■■□□□ 1.44
SMPDL3A-203ENST00000539041 POLRMTO00411 1230 aaKnown RBP24.03■■□□□ 1.44
SMPDL3A-203ENST00000539041 PCP11498 1178 aaKnown RBP24.03■■□□□ 1.44
SMPDL3A-203ENST00000539041 CEBPZQ03701 1054 aaKnown RBP24.03■■□□□ 1.44
SMPDL3A-203ENST00000539041 BRAPQ7Z569 592 aa24.03■■□□□ 1.44
SMPDL3A-203ENST00000539041 SLC51AQ86UW1 340 aa24.03■■□□□ 1.44
SMPDL3A-203ENST00000539041 CCDC144CPQ8IYA2 1237 aa24.03■■□□□ 1.44
SMPDL3A-203ENST00000539041 PROM2Q8N271 834 aa24.03■■□□□ 1.44
SMPDL3A-203ENST00000539041 TRIM44Q96DX7 344 aaPredicted RBP24.03■■□□□ 1.44
SMPDL3A-203ENST00000539041 ZKSCAN3Q9BRR0 538 aa24.03■■□□□ 1.44
SMPDL3A-203ENST00000539041 ALG1Q9BT22 464 aa24.03■■□□□ 1.44
SMPDL3A-203ENST00000539041 MYL10Q9BUA6 226 aa24.03■■□□□ 1.44
SMPDL3A-203ENST00000539041 FAM217BQ9NTX9 383 aaPredicted RBP24.03■■□□□ 1.44
SMPDL3A-203ENST00000539041 AATFQ9NY61 560 aaKnown RBP eCLIP24.03■■□□□ 1.44
SMPDL3A-203ENST00000539041 STK36Q9NRP7 1315 aa24.03■■□□□ 1.44
SMPDL3A-203ENST00000539041 IARSP41252 1262 aaKnown RBP24.03■■□□□ 1.44
SMPDL3A-203ENST00000539041 RBM6P78332 1123 aaKnown RBP24.03■■□□□ 1.44
SMPDL3A-203ENST00000539041 GPSM2P81274 684 aa24.03■■□□□ 1.44
SMPDL3A-203ENST00000539041 DZIP1Q86YF9 867 aaKnown RBP24.03■■□□□ 1.44
SMPDL3A-203ENST00000539041 ATP2B4P23634 1241 aa24.02■■□□□ 1.44
SMPDL3A-203ENST00000539041 RCAN1P53805 252 aa24.02■■□□□ 1.44
SMPDL3A-203ENST00000539041 UBAC1Q9BSL1 405 aa24.02■■□□□ 1.44
SMPDL3A-203ENST00000539041 DACT1Q9NYF0 836 aa24.02■■□□□ 1.44
SMPDL3A-203ENST00000539041 UVSSAQ2YD98 709 aa24.01■■□□□ 1.43
SMPDL3A-203ENST00000539041 CTR9Q6PD62 1173 aa24.01■■□□□ 1.43
SMPDL3A-203ENST00000539041 FTOQ9C0B1 505 aaKnown RBP eCLIP24.01■■□□□ 1.43
SMPDL3A-203ENST00000539041 RTN4Q9NQC3 1192 aaKnown RBP24.01■■□□□ 1.43
SMPDL3A-203ENST00000539041 ATP8A2Q9NTI2 1148 aa24.01■■□□□ 1.43
SMPDL3A-203ENST00000539041 JAG2Q9Y219 1238 aa24.01■■□□□ 1.43
SMPDL3A-203ENST00000539041 FGRP09769 529 aa24.01■■□□□ 1.43
SMPDL3A-203ENST00000539041 HOXA10P31260 410 aaPredicted RBP24.01■■□□□ 1.43
SMPDL3A-203ENST00000539041 MAP3K11Q16584 847 aa24.01■■□□□ 1.43
SMPDL3A-203ENST00000539041 ZNF772Q68DY9 489 aaPredicted RBP24.01■■□□□ 1.43
SMPDL3A-203ENST00000539041 PHKBQ93100 1093 aa24.01■■□□□ 1.43
SMPDL3A-203ENST00000539041 PDLIM2Q96JY6 352 aa24.01■■□□□ 1.43
SMPDL3A-203ENST00000539041 RTEL1Q9NZ71 1219 aa24.01■■□□□ 1.43
SMPDL3A-203ENST00000539041 CYP2D7A0A087X1C5 515 aa24■■□□□ 1.43
SMPDL3A-203ENST00000539041 RANBP6O60518 1105 aaKnown RBP24■■□□□ 1.43
SMPDL3A-203ENST00000539041 BBOX1O75936 387 aa24■■□□□ 1.43
SMPDL3A-203ENST00000539041 LDHBP07195 334 aaKnown RBP24■■□□□ 1.43
SMPDL3A-203ENST00000539041 KIF23Q02241 960 aaPredicted RBP24■■□□□ 1.43
SMPDL3A-203ENST00000539041 SSRP1Q08945 709 aaKnown RBP24■■□□□ 1.43
SMPDL3A-203ENST00000539041 RTN1Q16799 776 aa24■■□□□ 1.43
SMPDL3A-203ENST00000539041 CRAMP1Q96RY5 1269 aa24■■□□□ 1.43
SMPDL3A-203ENST00000539041 CLSTN2Q9H4D0 955 aa24■■□□□ 1.43
SMPDL3A-203ENST00000539041 DCP1AQ9NPI6 582 aaPredicted RBP24■■□□□ 1.43
SMPDL3A-203ENST00000539041 TNS1Q9HBL0 1735 aaKnown RBP24■■□□□ 1.43
SMPDL3A-203ENST00000539041 TNKSO95271 1327 aa23.99■■□□□ 1.43
SMPDL3A-203ENST00000539041 USP17L12C9JPN9 530 aa23.99■■□□□ 1.43
SMPDL3A-203ENST00000539041 USP17L21D6R901 530 aa23.99■■□□□ 1.43
SMPDL3A-203ENST00000539041 UFL1O94874 794 aa23.99■■□□□ 1.43
SMPDL3A-203ENST00000539041 FMNL1O95466 1100 aaPredicted RBP23.99■■□□□ 1.43
SMPDL3A-203ENST00000539041 IFNAR1P17181 557 aa23.99■■□□□ 1.43
SMPDL3A-203ENST00000539041 SEC23AQ15436 765 aa23.99■■□□□ 1.43
SMPDL3A-203ENST00000539041 TNMDQ9H2S6 317 aa23.99■■□□□ 1.43
SMPDL3A-203ENST00000539041 GJB4Q9NTQ9 266 aa23.99■■□□□ 1.43
SMPDL3A-203ENST00000539041 GGA1Q9UJY5 639 aa23.99■■□□□ 1.43
SMPDL3A-203ENST00000539041 RGPD3A6NKT7 1758 aaPredicted RBP23.99■■□□□ 1.43
SMPDL3A-203ENST00000539041 RGPD4Q7Z3J3 1758 aa23.99■■□□□ 1.43
SMPDL3A-203ENST00000539041 SMIM22K7EJ46 135 aa23.98■■□□□ 1.43
SMPDL3A-203ENST00000539041 MYSM1Q5VVJ2 828 aa23.98■■□□□ 1.43
SMPDL3A-203ENST00000539041 ZNF654Q8IZM8 581 aa23.98■■□□□ 1.43
SMPDL3A-203ENST00000539041 AIFM3Q96NN9 605 aa23.98■■□□□ 1.43
SMPDL3A-203ENST00000539041 GPR101Q96P66 508 aaPredicted RBP23.98■■□□□ 1.43
SMPDL3A-203ENST00000539041 ARPP21Q9UBL0 812 aaPredicted RBP23.98■■□□□ 1.43
SMPDL3A-203ENST00000539041 KLRG2A4D1S0 409 aaPredicted RBP23.98■■□□□ 1.43
SMPDL3A-203ENST00000539041 KIF28PB7ZC32 967 aa23.98■■□□□ 1.43
SMPDL3A-203ENST00000539041 PLSCR1O15162 318 aa23.98■■□□□ 1.43
SMPDL3A-203ENST00000539041 GSTO1P78417 241 aa23.98■■□□□ 1.43
SMPDL3A-203ENST00000539041 SBK1Q52WX2 424 aa23.98■■□□□ 1.43
SMPDL3A-203ENST00000539041 KRT40Q6A162 431 aa23.98■■□□□ 1.43
SMPDL3A-203ENST00000539041 WASF1Q92558 559 aa23.98■■□□□ 1.43
SMPDL3A-203ENST00000539041 SLC26A6Q9BXS9 759 aa23.98■■□□□ 1.43
SMPDL3A-203ENST00000539041 FOCADQ5VW36 1801 aa23.97■■□□□ 1.43
SMPDL3A-203ENST00000539041 COL11A2P13942 1736 aaPredicted RBP23.97■■□□□ 1.43
SMPDL3A-203ENST00000539041 CCDC196A0A1B0GTZ2 297 aa23.97■■□□□ 1.43
SMPDL3A-203ENST00000539041 NR1I2O75469 434 aa23.97■■□□□ 1.43
Retrieved 100 of 20,778 RNA–protein pairs in 13.8 ms