RNA–Protein interactions for RNA: ENST00000534389.2

CSDE1-216, Transcript of cold shock domain containing E1, humanhuman

TSL 4

Gene CSDE1, Length 601 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSDE1-216ENST00000534389 RNF208Q9H0X6 261 aa4.12□□□□□ -1.75
CSDE1-216ENST00000534389 PIDD1Q9HB75 910 aa4.12□□□□□ -1.75
CSDE1-216ENST00000534389 EPB41L3Q9Y2J2 1087 aaPredicted RBP4.12□□□□□ -1.75
CSDE1-216ENST00000534389 RNGTTO60942 597 aaKnown RBP4.11□□□□□ -1.75
CSDE1-216ENST00000534389 DEAF1O75398 565 aaPredicted RBP4.11□□□□□ -1.75
CSDE1-216ENST00000534389 PF4P02776 101 aa4.11□□□□□ -1.75
CSDE1-216ENST00000534389 LIG1P18858 919 aa4.11□□□□□ -1.75
CSDE1-216ENST00000534389 EIF4A3P38919 411 aaKnown RBP4.11□□□□□ -1.75
CSDE1-216ENST00000534389 USP11P51784 963 aa4.11□□□□□ -1.75
CSDE1-216ENST00000534389 CHMP4BP1P59074 171 aa4.11□□□□□ -1.75
CSDE1-216ENST00000534389 RPS26P62854 115 aaKnown RBP4.11□□□□□ -1.75
CSDE1-216ENST00000534389 RASSF7Q02833 373 aa4.11□□□□□ -1.75
CSDE1-216ENST00000534389 APOBRQ0VD83 1088 aa4.11□□□□□ -1.75
CSDE1-216ENST00000534389 CAMK2GQ13555 558 aaPredicted RBP4.11□□□□□ -1.75
CSDE1-216ENST00000534389 SEPT6Q14141 434 aa4.11□□□□□ -1.75
CSDE1-216ENST00000534389 MLECQ14165 292 aa4.11□□□□□ -1.75
CSDE1-216ENST00000534389 FBXW10Q5XX13 1052 aa4.11□□□□□ -1.75
CSDE1-216ENST00000534389 GOLM1Q8NBJ4 401 aa4.11□□□□□ -1.75
CSDE1-216ENST00000534389 UBASH3BQ8TF42 649 aa4.11□□□□□ -1.75
CSDE1-216ENST00000534389 RSRP1Q9BUV0 290 aa4.11□□□□□ -1.75
CSDE1-216ENST00000534389 YIPF2Q9BWQ6 316 aa4.11□□□□□ -1.75
CSDE1-216ENST00000534389 PNNQ9H307 717 aaKnown RBP4.11□□□□□ -1.75
CSDE1-216ENST00000534389 AKTIPQ9H8T0 292 aa4.11□□□□□ -1.75
CSDE1-216ENST00000534389 COPRSQ9NQ92 184 aa4.11□□□□□ -1.75
CSDE1-216ENST00000534389 KDM5BQ9UGL1 1544 aa4.11□□□□□ -1.75
CSDE1-216ENST00000534389 WIZO95785 1651 aa4.1□□□□□ -1.75
CSDE1-216ENST00000534389 LOC100289279A0A1B0GTE1 492 aa4.1□□□□□ -1.75
CSDE1-216ENST00000534389 FSD2A1L4K1 749 aa4.1□□□□□ -1.75
CSDE1-216ENST00000534389 PRAMEF27A3QJZ7 478 aa4.1□□□□□ -1.75
CSDE1-216ENST00000534389 TLR3O15455 904 aaKnown RBP4.1□□□□□ -1.75
CSDE1-216ENST00000534389 TRIM37O94972 964 aa4.1□□□□□ -1.75
CSDE1-216ENST00000534389 XRCC6P12956 609 aaKnown RBP eCLIP4.1□□□□□ -1.75
CSDE1-216ENST00000534389 RIPK4P57078 832 aa4.1□□□□□ -1.75
CSDE1-216ENST00000534389 ZC3H6P61129 1189 aaKnown RBP4.1□□□□□ -1.75
CSDE1-216ENST00000534389 CWF19L2Q2TBE0 894 aaKnown RBP4.1□□□□□ -1.75
CSDE1-216ENST00000534389 FOXD4L6Q3SYB3 417 aaPredicted RBP4.1□□□□□ -1.75
CSDE1-216ENST00000534389 EXOSC6Q5RKV6 272 aaKnown RBP4.1□□□□□ -1.75
CSDE1-216ENST00000534389 SHISA2Q6UWI4 295 aa4.1□□□□□ -1.75
CSDE1-216ENST00000534389 FOXD4L3Q6VB84 417 aaPredicted RBP4.1□□□□□ -1.75
CSDE1-216ENST00000534389 AGMOQ6ZNB7 445 aa4.1□□□□□ -1.75
CSDE1-216ENST00000534389 CDC37L1Q7L3B6 337 aa4.1□□□□□ -1.75
CSDE1-216ENST00000534389 DYMQ7RTS9 669 aa4.1□□□□□ -1.75
CSDE1-216ENST00000534389 HDXQ7Z353 690 aa4.1□□□□□ -1.75
CSDE1-216ENST00000534389 ALYREFQ86V81 257 aaKnown RBP4.1□□□□□ -1.75
CSDE1-216ENST00000534389 AGGF1Q8N302 714 aaeCLIP4.1□□□□□ -1.75
CSDE1-216ENST00000534389 PHC3Q8NDX5 983 aa4.1□□□□□ -1.75
CSDE1-216ENST00000534389 EXOC6Q8TAG9 804 aa4.1□□□□□ -1.75
CSDE1-216ENST00000534389 GRIN3AQ8TCU5 1115 aa4.1□□□□□ -1.75
CSDE1-216ENST00000534389 GPBAR1Q8TDU6 330 aa4.1□□□□□ -1.75
CSDE1-216ENST00000534389 CPLX3Q8WVH0 158 aa4.1□□□□□ -1.75
CSDE1-216ENST00000534389 DCAF5Q96JK2 942 aa4.1□□□□□ -1.75
CSDE1-216ENST00000534389 PANK2Q9BZ23 570 aa4.1□□□□□ -1.75
CSDE1-216ENST00000534389 TGIF2Q9GZN2 237 aa4.1□□□□□ -1.75
CSDE1-216ENST00000534389 NAP1L2Q9ULW6 460 aaPredicted RBP4.1□□□□□ -1.75
CSDE1-216ENST00000534389 NUDCQ9Y266 331 aa4.1□□□□□ -1.75
CSDE1-216ENST00000534389 CCNB3Q8WWL7 1395 aa4.1□□□□□ -1.75
CSDE1-216ENST00000534389 ARAP1Q96P48 1450 aa4.1□□□□□ -1.75
CSDE1-216ENST00000534389 DLL1O00548 723 aa4.09□□□□□ -1.75
CSDE1-216ENST00000534389 AOC2O75106 756 aa4.09□□□□□ -1.75
CSDE1-216ENST00000534389 ALX3O95076 343 aa4.09□□□□□ -1.75
CSDE1-216ENST00000534389 GDF11O95390 407 aa4.09□□□□□ -1.75
CSDE1-216ENST00000534389 ECEL1O95672 775 aa4.09□□□□□ -1.75
CSDE1-216ENST00000534389 TFE3P19532 575 aaPredicted RBP4.09□□□□□ -1.75
CSDE1-216ENST00000534389 BMP6P22004 513 aa4.09□□□□□ -1.75
CSDE1-216ENST00000534389 DNAJA1P31689 397 aaKnown RBP4.09□□□□□ -1.75
CSDE1-216ENST00000534389 ETF1P62495 437 aaKnown RBP4.09□□□□□ -1.75
CSDE1-216ENST00000534389 ID3Q02535 119 aa4.09□□□□□ -1.75
CSDE1-216ENST00000534389 LMNB2Q03252 620 aa4.09□□□□□ -1.75
CSDE1-216ENST00000534389 ANKRD34AQ69YU3 496 aa4.09□□□□□ -1.75
CSDE1-216ENST00000534389 TRIM42Q8IWZ5 723 aa4.09□□□□□ -1.75
CSDE1-216ENST00000534389 FAM9BQ8IZU0 186 aa4.09□□□□□ -1.75
CSDE1-216ENST00000534389 TMEM151AQ8N4L1 468 aa4.09□□□□□ -1.75
CSDE1-216ENST00000534389 ANKRD24Q8TF21 1146 aa4.09□□□□□ -1.75
CSDE1-216ENST00000534389 ZNF296Q8WUU4 475 aaPredicted RBP4.09□□□□□ -1.75
CSDE1-216ENST00000534389 PDCL3Q9H2J4 239 aa4.09□□□□□ -1.75
CSDE1-216ENST00000534389 KCNF1Q9H3M0 494 aa4.09□□□□□ -1.75
CSDE1-216ENST00000534389 ACBD3Q9H3P7 528 aa4.09□□□□□ -1.75
CSDE1-216ENST00000534389 CCDC86Q9H6F5 360 aaKnown RBP4.09□□□□□ -1.75
CSDE1-216ENST00000534389 KRT82Q9NSB4 513 aa4.09□□□□□ -1.75
CSDE1-216ENST00000534389 KCNK4Q9NYG8 393 aa4.09□□□□□ -1.75
CSDE1-216ENST00000534389 DDX41Q9UJV9 622 aaKnown RBP4.09□□□□□ -1.75
CSDE1-216ENST00000534389 PCDHB5Q9Y5E4 795 aa4.09□□□□□ -1.75
CSDE1-216ENST00000534389 CSADQ9Y600 493 aa4.09□□□□□ -1.75
CSDE1-216ENST00000534389 SETD5Q9C0A6 1442 aa4.09□□□□□ -1.75
CSDE1-216ENST00000534389 NCOA2Q15596 1464 aa4.09□□□□□ -1.75
CSDE1-216ENST00000534389 KRBA1A5PL33 1030 aa4.08□□□□□ -1.76
CSDE1-216ENST00000534389 DCDC2CA8MYV0 355 aa4.08□□□□□ -1.76
CSDE1-216ENST00000534389 ADAM11O75078 769 aa4.08□□□□□ -1.76
CSDE1-216ENST00000534389 WISP1O95388 367 aa4.08□□□□□ -1.76
CSDE1-216ENST00000534389 RAB6AP20340 208 aa4.08□□□□□ -1.76
CSDE1-216ENST00000534389 ASPAP45381 313 aa4.08□□□□□ -1.76
CSDE1-216ENST00000534389 IREB2P48200 963 aaKnown RBP4.08□□□□□ -1.76
CSDE1-216ENST00000534389 PDE4BQ07343 736 aa4.08□□□□□ -1.76
CSDE1-216ENST00000534389 SCRIBQ14160 1630 aa4.08□□□□□ -1.76
CSDE1-216ENST00000534389 SEZ6Q53EL9 994 aa4.08□□□□□ -1.76
CSDE1-216ENST00000534389 WIPI1Q5MNZ9 446 aaPredicted RBP4.08□□□□□ -1.76
CSDE1-216ENST00000534389 ILDR2Q71H61 639 aa4.08□□□□□ -1.76
CSDE1-216ENST00000534389 ERMP1Q7Z2K6 904 aa4.08□□□□□ -1.76
CSDE1-216ENST00000534389 STK35Q8TDR2 534 aa4.08□□□□□ -1.76
CSDE1-216ENST00000534389 NKD1Q969G9 470 aa4.08□□□□□ -1.76
Retrieved 100 of 20,778 RNA–protein pairs in 271.3 ms