RNA–Protein interactions for RNA: ENST00000530836.5

VPS28-212, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 5

Gene VPS28, Length 1,613 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-212ENST00000530836 NAPBQ9H115 298 aa25.12■■□□□ 1.61
VPS28-212ENST00000530836 GSG1L2A8MUP6 293 aa25.12■■□□□ 1.61
VPS28-212ENST00000530836 E7EWF7 191 aa25.12■■□□□ 1.61
VPS28-212ENST00000530836 AK2P54819 239 aa25.12■■□□□ 1.61
VPS28-212ENST00000530836 ZSCAN31Q96LW9 406 aaPredicted RBP25.12■■□□□ 1.61
VPS28-212ENST00000530836 MRIQ9BWK5 157 aa25.12■■□□□ 1.61
VPS28-212ENST00000530836 KIF4BQ2VIQ3 1234 aa25.11■■□□□ 1.61
VPS28-212ENST00000530836 SLKQ9H2G2 1235 aaPredicted RBP25.11■■□□□ 1.61
VPS28-212ENST00000530836 TAF6LQ9Y6J9 622 aa25.11■■□□□ 1.61
VPS28-212ENST00000530836 POTEIP0CG38 1075 aa25.1■■□□□ 1.61
VPS28-212ENST00000530836 POTEJP0CG39 1038 aa25.1■■□□□ 1.61
VPS28-212ENST00000530836 HDLBPQ00341 1268 aaKnown RBP25.1■■□□□ 1.61
VPS28-212ENST00000530836 DHX32Q7L7V1 743 aaKnown RBP25.1■■□□□ 1.61
VPS28-212ENST00000530836 INTS4Q96HW7 963 aaKnown RBP25.1■■□□□ 1.61
VPS28-212ENST00000530836 CWC22Q9HCG8 908 aaKnown RBP25.1■■□□□ 1.61
VPS28-212ENST00000530836 SERPINA10Q9UK55 444 aa25.1■■□□□ 1.61
VPS28-212ENST00000530836 CIZ1Q9ULV3 898 aaPredicted RBP25.1■■□□□ 1.61
VPS28-212ENST00000530836 TOMM70O94826 608 aa25.09■■□□□ 1.61
VPS28-212ENST00000530836 BAG3O95817 575 aa25.09■■□□□ 1.61
VPS28-212ENST00000530836 CUL4AQ13619 759 aa25.09■■□□□ 1.61
VPS28-212ENST00000530836 LDHDQ86WU2 507 aa25.09■■□□□ 1.61
VPS28-212ENST00000530836 MTMR14Q8NCE2 650 aa25.09■■□□□ 1.61
VPS28-212ENST00000530836 NOL10Q9BSC4 688 aaKnown RBP25.09■■□□□ 1.61
VPS28-212ENST00000530836 CRNKL1Q9BZJ0 848 aaKnown RBP25.09■■□□□ 1.61
VPS28-212ENST00000530836 SH2B1Q9NRF2 756 aaPredicted RBP25.09■■□□□ 1.61
VPS28-212ENST00000530836 TDO2P48775 406 aa25.08■■□□□ 1.61
VPS28-212ENST00000530836 STOX1Q6ZVD7 989 aa25.08■■□□□ 1.61
VPS28-212ENST00000530836 SPRYD3Q8NCJ5 442 aa25.08■■□□□ 1.61
VPS28-212ENST00000530836 ZC3H15Q8WU90 426 aaKnown RBP25.08■■□□□ 1.61
VPS28-212ENST00000530836 CPA1P15085 419 aa25.08■■□□□ 1.6
VPS28-212ENST00000530836 TRDNQ13061 729 aa25.08■■□□□ 1.6
VPS28-212ENST00000530836 DLGAP5Q15398 846 aa25.08■■□□□ 1.6
VPS28-212ENST00000530836 CFAP100Q494V2 611 aa25.08■■□□□ 1.6
VPS28-212ENST00000530836 NCOA7Q8NI08 942 aa25.08■■□□□ 1.6
VPS28-212ENST00000530836 FAM163AQ96GL9 167 aaPredicted RBP25.08■■□□□ 1.6
VPS28-212ENST00000530836 ZBED3Q96IU2 234 aaPredicted RBP25.08■■□□□ 1.6
VPS28-212ENST00000530836 EPB41L4AQ9HCS5 686 aaPredicted RBP25.08■■□□□ 1.6
VPS28-212ENST00000530836 CHMP5Q9NZZ3 219 aa25.08■■□□□ 1.6
VPS28-212ENST00000530836 PGAP2Q9UHJ9 254 aa25.08■■□□□ 1.6
VPS28-212ENST00000530836 CLEC11AQ9Y240 323 aa25.08■■□□□ 1.6
VPS28-212ENST00000530836 CRKP46108 304 aa25.07■■□□□ 1.6
VPS28-212ENST00000530836 PPP4CP60510 307 aa25.07■■□□□ 1.6
VPS28-212ENST00000530836 RBM46Q8TBY0 533 aaKnown RBP25.07■■□□□ 1.6
VPS28-212ENST00000530836 WNT10BO00744 389 aa25.06■■□□□ 1.6
VPS28-212ENST00000530836 HHIPL2Q6UWX4 724 aa25.06■■□□□ 1.6
VPS28-212ENST00000530836 RALYLQ86SE5 291 aaKnown RBP25.06■■□□□ 1.6
VPS28-212ENST00000530836 FBXL16Q8N461 479 aa25.06■■□□□ 1.6
VPS28-212ENST00000530836 TEKT1Q969V4 418 aa25.06■■□□□ 1.6
VPS28-212ENST00000530836 ATP8A2Q9NTI2 1148 aa25.06■■□□□ 1.6
VPS28-212ENST00000530836 WDR19Q8NEZ3 1342 aa25.06■■□□□ 1.6
VPS28-212ENST00000530836 PRKAB2O43741 272 aa25.05■■□□□ 1.6
VPS28-212ENST00000530836 DDIT3P35638 169 aa25.05■■□□□ 1.6
VPS28-212ENST00000530836 RBM5P52756 815 aaKnown RBP eCLIP25.05■■□□□ 1.6
VPS28-212ENST00000530836 HAND2P61296 217 aa25.05■■□□□ 1.6
VPS28-212ENST00000530836 NBPF9Q3BBW0 867 aa25.05■■□□□ 1.6
VPS28-212ENST00000530836 AATFQ9NY61 560 aaKnown RBP eCLIP25.05■■□□□ 1.66e-6■■■■□ 25.6
VPS28-212ENST00000530836 PCDHAC2Q9Y5I4 1007 aa25.05■■□□□ 1.6
VPS28-212ENST00000530836 MROH7-TTC4A0A0A0MT08 1334 aa25.05■■□□□ 1.6
VPS28-212ENST00000530836 LAMA4Q16363 1823 aa25.05■■□□□ 1.6
VPS28-212ENST00000530836 SPDYE2BA6NHP3 402 aa25.04■■□□□ 1.6
VPS28-212ENST00000530836 SPDYE6P0CI01 402 aa25.04■■□□□ 1.6
VPS28-212ENST00000530836 PLCG2P16885 1265 aa25.04■■□□□ 1.6
VPS28-212ENST00000530836 DYNLL1P63167 89 aaKnown RBP25.04■■□□□ 1.6
VPS28-212ENST00000530836 EXOSC10Q01780 885 aaKnown RBP25.04■■□□□ 1.6
VPS28-212ENST00000530836 CHADLQ6NUI6 762 aa25.04■■□□□ 1.6
VPS28-212ENST00000530836 PRMT6Q96LA8 375 aaPredicted RBP25.04■■□□□ 1.6
VPS28-212ENST00000530836 CNNM2Q9H8M5 875 aa25.04■■□□□ 1.6
VPS28-212ENST00000530836 ZDHHC15Q96MV8 337 aa25.04■■□□□ 1.6
VPS28-212ENST00000530836 RNF41Q9H4P4 317 aaPredicted RBP25.04■■□□□ 1.6
VPS28-212ENST00000530836 MCM5P33992 734 aa25.03■■□□□ 1.6
VPS28-212ENST00000530836 DIXDC1Q155Q3 683 aa25.03■■□□□ 1.6
VPS28-212ENST00000530836 NOL8Q76FK4 1167 aaKnown RBP25.03■■□□□ 1.6
VPS28-212ENST00000530836 SMC1BQ8NDV3 1235 aa25.03■■□□□ 1.6
VPS28-212ENST00000530836 ANAPC4Q9UJX5 808 aa25.03■■□□□ 1.6
VPS28-212ENST00000530836 FGD1P98174 961 aa25.02■■□□□ 1.6
VPS28-212ENST00000530836 SDR42E1Q8WUS8 393 aa25.02■■□□□ 1.6
VPS28-212ENST00000530836 AGXT2Q9BYV1 514 aa25.02■■□□□ 1.6
VPS28-212ENST00000530836 ZSCAN21Q9Y5A6 473 aaPredicted RBP25.02■■□□□ 1.6
VPS28-212ENST00000530836 ASTN2O75129 1339 aaPredicted RBP25.02■■□□□ 1.6
VPS28-212ENST00000530836 GPR75-ASB3A0A0A6YYF3 556 aa25.01■■□□□ 1.59
VPS28-212ENST00000530836 PCP11498 1178 aaKnown RBP25.01■■□□□ 1.59
VPS28-212ENST00000530836 TOB2Q14106 344 aaPredicted RBP25.01■■□□□ 1.59
VPS28-212ENST00000530836 MAP1SQ66K74 1059 aaPredicted RBP25.01■■□□□ 1.59
VPS28-212ENST00000530836 APOBEC3HQ6NTF7 200 aaKnown RBP25.01■■□□□ 1.59
VPS28-212ENST00000530836 GAKO14976 1311 aa25.01■■□□□ 1.59
VPS28-212ENST00000530836 AKNAD1Q5T1N1 836 aa25.01■■□□□ 1.59
VPS28-212ENST00000530836 Q6ZUG5 572 aa25.01■■□□□ 1.59
VPS28-212ENST00000530836 STAG1Q8WVM7 1258 aa25.01■■□□□ 1.59
VPS28-212ENST00000530836 KRT23Q9C075 422 aa25.01■■□□□ 1.59
VPS28-212ENST00000530836 DAGLAQ9Y4D2 1042 aa25.01■■□□□ 1.59
VPS28-212ENST00000530836 MYO1BO43795 1136 aa25■■□□□ 1.59
VPS28-212ENST00000530836 PPARAQ07869 468 aa25■■□□□ 1.59
VPS28-212ENST00000530836 FSTL1Q12841 308 aa25■■□□□ 1.59
VPS28-212ENST00000530836 ANGEL2Q5VTE6 544 aaKnown RBP25■■□□□ 1.59
VPS28-212ENST00000530836 TBC1D10CQ8IV04 446 aa25■■□□□ 1.59
VPS28-212ENST00000530836 MB21D2Q8IYB1 491 aaPredicted RBP25■■□□□ 1.59
VPS28-212ENST00000530836 DCPSQ96C86 337 aaKnown RBP25■■□□□ 1.59
VPS28-212ENST00000530836 CHMP4CQ96CF2 233 aa25■■□□□ 1.59
VPS28-212ENST00000530836 NBPF3Q9H094 633 aa25■■□□□ 1.59
VPS28-212ENST00000530836 GGA3Q9NZ52 723 aa25■■□□□ 1.59
Retrieved 100 of 20,778 RNA–protein pairs in 181.2 ms