RNA–Protein interactions for RNA: ENST00000505010.5

TPM3-218, Transcript of tropomyosin 3, human

TSL 2

Gene TPM3, Length 540 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
TPM3-218	ENST00000505010	LCORL	Q8N3X6	602 aa		11.16	□□□□□ -0.62
TPM3-218	ENST00000505010	TBC1D22A	Q8WUA7	517 aa		11.16	□□□□□ -0.62
TPM3-218	ENST00000505010	NSUN4	Q96CB9	384 aa	Known RBP	11.16	□□□□□ -0.62
TPM3-218	ENST00000505010	DSCC1	Q9BVC3	393 aa		11.16	□□□□□ -0.62
TPM3-218	ENST00000505010	FOCAD	Q5VW36	1801 aa		11.16	□□□□□ -0.62
TPM3-218	ENST00000505010	MKI67	P46013	3256 aa	Known RBP	11.15	□□□□□ -0.62
TPM3-218	ENST00000505010	SLC27A2	O14975	620 aa		11.15	□□□□□ -0.62
TPM3-218	ENST00000505010	HSPD1	P10809	573 aa	Known RBP	11.15	□□□□□ -0.62
TPM3-218	ENST00000505010	ZKSCAN1	P17029	563 aa	Predicted RBP	11.15	□□□□□ -0.62
TPM3-218	ENST00000505010	GSTO1	P78417	241 aa		11.15	□□□□□ -0.62
TPM3-218	ENST00000505010	BECN1	Q14457	450 aa		11.15	□□□□□ -0.62
TPM3-218	ENST00000505010	NECTIN1	Q15223	517 aa		11.15	□□□□□ -0.62
TPM3-218	ENST00000505010	GRIK5	Q16478	980 aa		11.15	□□□□□ -0.62
TPM3-218	ENST00000505010	PODN	Q7Z5L7	613 aa		11.15	□□□□□ -0.62
TPM3-218	ENST00000505010	ZNF384	Q8TF68	577 aa		11.15	□□□□□ -0.62
TPM3-218	ENST00000505010	DCPS	Q96C86	337 aa	Known RBP	11.15	□□□□□ -0.62
TPM3-218	ENST00000505010	IPO9	Q96P70	1041 aa	Known RBP	11.15	□□□□□ -0.62
TPM3-218	ENST00000505010	HDAC9	Q9UKV0	1011 aa		11.15	□□□□□ -0.62
TPM3-218	ENST00000505010	SNX14	Q9Y5W7	946 aa		11.15	□□□□□ -0.62
TPM3-218	ENST00000505010	SHTN1	A0MZ66	631 aa		11.14	□□□□□ -0.63
TPM3-218	ENST00000505010	FOXP2	O15409	715 aa		11.14	□□□□□ -0.63
TPM3-218	ENST00000505010	APP	P05067	770 aa		11.14	□□□□□ -0.63
TPM3-218	ENST00000505010	SLC10A3	P09131	477 aa		11.14	□□□□□ -0.63
TPM3-218	ENST00000505010	HABP4	Q5JVS0	413 aa	Known RBP	11.14	□□□□□ -0.63
TPM3-218	ENST00000505010	TTLL5	Q6EMB2	1281 aa		11.14	□□□□□ -0.63
TPM3-218	ENST00000505010	TMED8	Q6PL24	325 aa	Predicted RBP	11.14	□□□□□ -0.63
TPM3-218	ENST00000505010	SAMD7	Q7Z3H4	446 aa		11.14	□□□□□ -0.63
TPM3-218	ENST00000505010	RASEF	Q8IZ41	740 aa		11.14	□□□□□ -0.63
TPM3-218	ENST00000505010	DPF2	Q92785	391 aa		11.14	□□□□□ -0.63
TPM3-218	ENST00000505010	STRBP	Q96SI9	672 aa	Known RBP	11.14	□□□□□ -0.63
TPM3-218	ENST00000505010	NOL10	Q9BSC4	688 aa	Known RBP	11.14	□□□□□ -0.63
TPM3-218	ENST00000505010	DAXX	Q9UER7	740 aa	Predicted RBP	11.14	□□□□□ -0.63
TPM3-218	ENST00000505010	MROH7-TTC4	A0A0A0MT08	1334 aa		11.13	□□□□□ -0.63
TPM3-218	ENST00000505010		F8W031	263 aa	Predicted RBP	11.13	□□□□□ -0.63
TPM3-218	ENST00000505010	IGSF3	O75054	1194 aa		11.13	□□□□□ -0.63
TPM3-218	ENST00000505010	GNAT2	P19087	354 aa		11.13	□□□□□ -0.63
TPM3-218	ENST00000505010	DYNLL1	P63167	89 aa	Known RBP	11.13	□□□□□ -0.63
TPM3-218	ENST00000505010	DIXDC1	Q155Q3	683 aa		11.13	□□□□□ -0.63
TPM3-218	ENST00000505010	TBC1D10B	Q4KMP7	808 aa	Predicted RBP	11.13	□□□□□ -0.63
TPM3-218	ENST00000505010	HSCB	Q8IWL3	235 aa		11.13	□□□□□ -0.63
TPM3-218	ENST00000505010	JAKMIP1	Q96N16	626 aa	Known RBP	11.13	□□□□□ -0.63
TPM3-218	ENST00000505010	MXD3	Q9BW11	206 aa		11.13	□□□□□ -0.63
TPM3-218	ENST00000505010	AATF	Q9NY61	560 aa	Known RBP eCLIP	11.13	□□□□□ -0.63
TPM3-218	ENST00000505010	CTNNA3	Q9UI47	895 aa		11.13	□□□□□ -0.63
TPM3-218	ENST00000505010	ZBTB12	Q9Y330	459 aa	Predicted RBP	11.13	□□□□□ -0.63
TPM3-218	ENST00000505010	SLC4A4	Q9Y6R1	1079 aa		11.13	□□□□□ -0.63
TPM3-218	ENST00000505010	MYH1	P12882	1939 aa		11.13	□□□□□ -0.63
TPM3-218	ENST00000505010	RPAP1	Q9BWH6	1393 aa	Predicted RBP	11.13	□□□□□ -0.63
TPM3-218	ENST00000505010	DDX60L	Q5H9U9	1706 aa	Known RBP	11.12	□□□□□ -0.63
TPM3-218	ENST00000505010	USP17L3	A6NCW0	530 aa		11.12	□□□□□ -0.63
TPM3-218	ENST00000505010	USP17L4	A6NCW7	530 aa		11.12	□□□□□ -0.63
TPM3-218	ENST00000505010	YDJC	A8MPS7	323 aa		11.12	□□□□□ -0.63
TPM3-218	ENST00000505010	ADM5	C9JUS6	153 aa		11.12	□□□□□ -0.63
TPM3-218	ENST00000505010	PRKAB2	O43741	272 aa		11.12	□□□□□ -0.63
TPM3-218	ENST00000505010	ST18	O60284	1047 aa		11.12	□□□□□ -0.63
TPM3-218	ENST00000505010	LDHC	P07864	332 aa		11.12	□□□□□ -0.63
TPM3-218	ENST00000505010	TDO2	P48775	406 aa		11.12	□□□□□ -0.63
TPM3-218	ENST00000505010	RBM26	Q5T8P6	1007 aa	Known RBP	11.12	□□□□□ -0.63
TPM3-218	ENST00000505010	STRIP1	Q5VSL9	837 aa		11.12	□□□□□ -0.63
TPM3-218	ENST00000505010	USP17L1	Q7RTZ2	530 aa		11.12	□□□□□ -0.63
TPM3-218	ENST00000505010	SLF2	Q8IX21	1173 aa		11.12	□□□□□ -0.63
TPM3-218	ENST00000505010	CERS5	Q8N5B7	392 aa		11.12	□□□□□ -0.63
TPM3-218	ENST00000505010	KCNB2	Q92953	911 aa		11.12	□□□□□ -0.63
TPM3-218	ENST00000505010	IL17RA	Q96F46	866 aa		11.12	□□□□□ -0.63
TPM3-218	ENST00000505010	RIOK1	Q9BRS2	568 aa	Known RBP	11.12	□□□□□ -0.63
TPM3-218	ENST00000505010	UPF3B	Q9BZI7	483 aa	Known RBP	11.12	□□□□□ -0.63
TPM3-218	ENST00000505010	NAPB	Q9H115	298 aa		11.12	□□□□□ -0.63
TPM3-218	ENST00000505010	EPB41L4A	Q9HCS5	686 aa	Predicted RBP	11.12	□□□□□ -0.63
TPM3-218	ENST00000505010	KCNQ5	Q9NR82	932 aa		11.12	□□□□□ -0.63
TPM3-218	ENST00000505010	ZMYM6	O95789	1325 aa		11.11	□□□□□ -0.63
TPM3-218	ENST00000505010	PATL2	C9JE40	543 aa	Known RBP	11.11	□□□□□ -0.63
TPM3-218	ENST00000505010	FGA	P02671	866 aa		11.11	□□□□□ -0.63
TPM3-218	ENST00000505010	CYP21A2	P08686	494 aa		11.11	□□□□□ -0.63
TPM3-218	ENST00000505010	CAST	P20810	708 aa	Known RBP	11.11	□□□□□ -0.63
TPM3-218	ENST00000505010	BTD	P43251	543 aa		11.11	□□□□□ -0.63
TPM3-218	ENST00000505010	NEK4	P51957	841 aa		11.11	□□□□□ -0.63
TPM3-218	ENST00000505010	HAND2	P61296	217 aa		11.11	□□□□□ -0.63
TPM3-218	ENST00000505010	KRT32	Q14532	448 aa		11.11	□□□□□ -0.63
TPM3-218	ENST00000505010	IMMT	Q16891	758 aa	Known RBP	11.11	□□□□□ -0.63
TPM3-218	ENST00000505010	DACT2	Q5SW24	774 aa		11.11	□□□□□ -0.63
TPM3-218	ENST00000505010	SULF1	Q8IWU6	871 aa		11.11	□□□□□ -0.63
TPM3-218	ENST00000505010	ZNF296	Q8WUU4	475 aa	Predicted RBP	11.11	□□□□□ -0.63
TPM3-218	ENST00000505010	TBC1D2	Q9BYX2	928 aa		11.11	□□□□□ -0.63
TPM3-218	ENST00000505010	CRNKL1	Q9BZJ0	848 aa	Known RBP	11.11	□□□□□ -0.63
TPM3-218	ENST00000505010	NACAP1	Q9BZK3	213 aa		11.11	□□□□□ -0.63
TPM3-218	ENST00000505010	TTF2	Q9UNY4	1162 aa	Known RBP	11.11	□□□□□ -0.63
TPM3-218	ENST00000505010	SUGT1	Q9Y2Z0	365 aa		11.11	□□□□□ -0.63
TPM3-218	ENST00000505010	TAF6L	Q9Y6J9	622 aa		11.11	□□□□□ -0.63
TPM3-218	ENST00000505010	MYH8	P13535	1937 aa		11.1	□□□□□ -0.63
TPM3-218	ENST00000505010	GSG1L2	A8MUP6	293 aa		11.1	□□□□□ -0.63
TPM3-218	ENST00000505010	PSMD14	O00487	310 aa		11.1	□□□□□ -0.63
TPM3-218	ENST00000505010	CD2BP2	O95400	341 aa	Known RBP	11.1	□□□□□ -0.63
TPM3-218	ENST00000505010	BAG3	O95817	575 aa		11.1	□□□□□ -0.63
TPM3-218	ENST00000505010	EGFR	P00533	1210 aa		11.1	□□□□□ -0.63
TPM3-218	ENST00000505010	PSMA5	P28066	241 aa		11.1	□□□□□ -0.63
TPM3-218	ENST00000505010	SLC4A3	P48751	1232 aa		11.1	□□□□□ -0.63
TPM3-218	ENST00000505010	FKBP1A	P62942	108 aa	Known RBP	11.1	□□□□□ -0.63
TPM3-218	ENST00000505010	ADCK5	Q3MIX3	580 aa		11.1	□□□□□ -0.63
TPM3-218	ENST00000505010	IFNL3	Q8IZI9	196 aa		11.1	□□□□□ -0.63
TPM3-218	ENST00000505010	SDR42E1	Q8WUS8	393 aa		11.1	□□□□□ -0.63

Retrieved 100 of 20,778 RNA–protein pairs in 99.8 ms