RNA–Protein interactions for RNA: ENST00000494780.1

COL27A1-208, Transcript of collagen type XXVII alpha 1 chain, humanhuman

TSL 4

Gene COL27A1, Length 514 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL27A1-208ENST00000494780 SH3BP5LQ7L8J4 393 aa28.71■■■□□ 2.19
COL27A1-208ENST00000494780 SCYL3Q8IZE3 742 aa28.71■■■□□ 2.19
COL27A1-208ENST00000494780 BCAR3O75815 825 aa28.7■■■□□ 2.18
COL27A1-208ENST00000494780 MECOMQ03112 1051 aa28.7■■■□□ 2.18
COL27A1-208ENST00000494780 FRAT1Q92837 279 aaPredicted RBP28.7■■■□□ 2.18
COL27A1-208ENST00000494780 PICK1Q9NRD5 415 aa28.7■■■□□ 2.18
COL27A1-208ENST00000494780 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP28.7■■■□□ 2.18
COL27A1-208ENST00000494780 ZSWIM8A7E2V4 1837 aa28.7■■■□□ 2.18
COL27A1-208ENST00000494780 GPR75-ASB3A0A0A6YYF3 556 aa28.69■■■□□ 2.18
COL27A1-208ENST00000494780 GORABQ5T7V8 394 aa28.69■■■□□ 2.18
COL27A1-208ENST00000494780 DDX4Q9NQI0 724 aaKnown RBP28.69■■■□□ 2.18
COL27A1-208ENST00000494780 HMG20BQ9P0W2 317 aa28.69■■■□□ 2.18
COL27A1-208ENST00000494780 TNNQ9UQP3 1299 aa28.69■■■□□ 2.18
COL27A1-208ENST00000494780 ZHX2Q9Y6X8 837 aa28.69■■■□□ 2.18
COL27A1-208ENST00000494780 DDTLA6NHG4 134 aaPredicted RBP28.68■■■□□ 2.18
COL27A1-208ENST00000494780 G3BP1Q13283 466 aaKnown RBP eCLIP28.68■■■□□ 2.18
COL27A1-208ENST00000494780 PICALMQ13492 652 aa28.68■■■□□ 2.18
COL27A1-208ENST00000494780 SLC4A8Q2Y0W8 1093 aa28.68■■■□□ 2.18
COL27A1-208ENST00000494780 GPAT2Q6NUI2 795 aa28.68■■■□□ 2.18
COL27A1-208ENST00000494780 SPATA5Q8NB90 893 aa28.68■■■□□ 2.18
COL27A1-208ENST00000494780 GCC1Q96CN9 775 aa28.68■■■□□ 2.18
COL27A1-208ENST00000494780 PARK7Q99497 189 aaKnown RBP28.68■■■□□ 2.18
COL27A1-208ENST00000494780 NPM3O75607 178 aaKnown RBP28.67■■■□□ 2.18
COL27A1-208ENST00000494780 LDHCP07864 332 aa28.67■■■□□ 2.18
COL27A1-208ENST00000494780 PTPRAP18433 802 aa28.67■■■□□ 2.18
COL27A1-208ENST00000494780 HOXD10P28358 340 aa28.67■■■□□ 2.18
COL27A1-208ENST00000494780 PSMC4P43686 418 aa28.67■■■□□ 2.18
COL27A1-208ENST00000494780 RHBDL3P58872 404 aa28.67■■■□□ 2.18
COL27A1-208ENST00000494780 GSTO1P78417 241 aa28.67■■■□□ 2.18
COL27A1-208ENST00000494780 FASTKD5Q7L8L6 764 aaKnown RBP28.67■■■□□ 2.18
COL27A1-208ENST00000494780 SH3TC2Q8TF17 1288 aa28.67■■■□□ 2.18
COL27A1-208ENST00000494780 CLUAP1Q96AJ1 413 aa28.67■■■□□ 2.18
COL27A1-208ENST00000494780 A0A0G2JLL6 359 aaPredicted RBP28.66■■■□□ 2.18
COL27A1-208ENST00000494780 PNMA6EA0A0J9YXQ4 647 aa28.66■■■□□ 2.18
COL27A1-208ENST00000494780 CTNND1O60716 968 aaKnown RBP28.66■■■□□ 2.18
COL27A1-208ENST00000494780 MAP4K4O95819 1239 aaPredicted RBP28.66■■■□□ 2.18
COL27A1-208ENST00000494780 CTGFP29279 349 aa28.66■■■□□ 2.18
COL27A1-208ENST00000494780 ARID4AP29374 1257 aaPredicted RBP28.66■■■□□ 2.18
COL27A1-208ENST00000494780 PRRT2Q7Z6L0 340 aaPredicted RBP28.66■■■□□ 2.18
COL27A1-208ENST00000494780 ZNF384Q8TF68 577 aa28.66■■■□□ 2.18
COL27A1-208ENST00000494780 TRIM47Q96LD4 638 aa28.66■■■□□ 2.18
COL27A1-208ENST00000494780 SRRDQ9UH36 339 aa28.66■■■□□ 2.18
COL27A1-208ENST00000494780 NSUN4Q96CB9 384 aaKnown RBP28.65■■■□□ 2.18
COL27A1-208ENST00000494780 AFG3L2Q9Y4W6 797 aa28.65■■■□□ 2.18
COL27A1-208ENST00000494780 FMNL1O95466 1100 aaPredicted RBP28.64■■■□□ 2.18
COL27A1-208ENST00000494780 TBC1D12O60347 775 aa28.63■■■□□ 2.17
COL27A1-208ENST00000494780 ECM2O94769 699 aaPredicted RBP28.63■■■□□ 2.17
COL27A1-208ENST00000494780 UQCRFS1P1P0C7P4 283 aa28.63■■■□□ 2.17
COL27A1-208ENST00000494780 BCRP11274 1271 aa28.63■■■□□ 2.17
COL27A1-208ENST00000494780 OSBPP22059 807 aa28.63■■■□□ 2.17
COL27A1-208ENST00000494780 ZKSCAN2Q63HK3 967 aa28.63■■■□□ 2.17
COL27A1-208ENST00000494780 PI16Q6UXB8 463 aa28.63■■■□□ 2.17
COL27A1-208ENST00000494780 PCDH10Q9P2E7 1040 aa28.63■■■□□ 2.17
COL27A1-208ENST00000494780 SLC45A1Q9Y2W3 748 aa28.63■■■□□ 2.17
COL27A1-208ENST00000494780 MYCP01106 439 aaPredicted RBP28.62■■■□□ 2.17
COL27A1-208ENST00000494780 CYP2C8P10632 490 aa28.62■■■□□ 2.17
COL27A1-208ENST00000494780 TBC1D9Q6ZT07 1266 aa28.62■■■□□ 2.17
COL27A1-208ENST00000494780 RAI14Q9P0K7 980 aa28.62■■■□□ 2.17
COL27A1-208ENST00000494780 CENPFP49454 3210 aa28.62■■■□□ 2.17
COL27A1-208ENST00000494780 DOCK1Q14185 1865 aa28.61■■■□□ 2.17
COL27A1-208ENST00000494780 SLURP2P0DP57 97 aa28.61■■■□□ 2.17
COL27A1-208ENST00000494780 GADL1Q6ZQY3 521 aa28.61■■■□□ 2.17
COL27A1-208ENST00000494780 TMEM57Q8N5G2 664 aa28.61■■■□□ 2.17
COL27A1-208ENST00000494780 COL2A1P02458 1487 aaPredicted RBP28.6■■■□□ 2.17
COL27A1-208ENST00000494780 MCAMP43121 646 aa28.6■■■□□ 2.17
COL27A1-208ENST00000494780 RAET1EQ8TD07 263 aa28.6■■■□□ 2.17
COL27A1-208ENST00000494780 GPR108Q9NPR9 543 aa28.6■■■□□ 2.17
COL27A1-208ENST00000494780 MYPNQ86TC9 1320 aa28.6■■■□□ 2.17
COL27A1-208ENST00000494780 FCGRTP55899 365 aa28.59■■■□□ 2.17
COL27A1-208ENST00000494780 POLA2Q14181 598 aa28.59■■■□□ 2.17
COL27A1-208ENST00000494780 XPO5Q9HAV4 1204 aaKnown RBP eCLIP28.59■■■□□ 2.17
COL27A1-208ENST00000494780 LRP2BPQ9P2M1 347 aa28.59■■■□□ 2.17
COL27A1-208ENST00000494780 GRK4P32298 578 aa28.58■■■□□ 2.17
COL27A1-208ENST00000494780 OSBPL5Q9H0X9 879 aaPredicted RBP28.58■■■□□ 2.17
COL27A1-208ENST00000494780 SSH3Q8TE77 659 aa28.57■■■□□ 2.16
COL27A1-208ENST00000494780 PHIPQ8WWQ0 1821 aa28.57■■■□□ 2.16
COL27A1-208ENST00000494780 TRIM75PA6NK02 468 aa28.56■■■□□ 2.16
COL27A1-208ENST00000494780 PTPRFP10586 1907 aa28.56■■■□□ 2.16
COL27A1-208ENST00000494780 ATP8B2P98198 1209 aa28.56■■■□□ 2.16
COL27A1-208ENST00000494780 TNNI3KQ59H18 835 aa28.56■■■□□ 2.16
COL27A1-208ENST00000494780 FPGT-TNNI3KV9GXZ4 949 aa28.56■■■□□ 2.16
COL27A1-208ENST00000494780 PRKCZQ05513 592 aa28.55■■■□□ 2.16
COL27A1-208ENST00000494780 OS9Q13438 667 aaPredicted RBP28.55■■■□□ 2.16
COL27A1-208ENST00000494780 MTFR1Q15390 333 aa28.55■■■□□ 2.16
COL27A1-208ENST00000494780 CCDC158Q5M9N0 1113 aa28.55■■■□□ 2.16
COL27A1-208ENST00000494780 TEX11Q8IYF3 940 aa28.55■■■□□ 2.16
COL27A1-208ENST00000494780 NOL10Q9BSC4 688 aaKnown RBP28.55■■■□□ 2.16
COL27A1-208ENST00000494780 FRMD4AQ9P2Q2 1039 aaPredicted RBP28.55■■■□□ 2.16
COL27A1-208ENST00000494780 AGTPBP1Q9UPW5 1226 aa28.55■■■□□ 2.16
COL27A1-208ENST00000494780 TTC39AQ5SRH9 613 aa28.54■■■□□ 2.16
COL27A1-208ENST00000494780 CCDC84Q86UT8 332 aaPredicted RBP28.54■■■□□ 2.16
COL27A1-208ENST00000494780 BRCA2P51587 3418 aa28.53■■■□□ 2.16
COL27A1-208ENST00000494780 FAM196BA6NMK8 535 aa28.53■■■□□ 2.16
COL27A1-208ENST00000494780 HABP4Q5JVS0 413 aaKnown RBP28.53■■■□□ 2.16
COL27A1-208ENST00000494780 NKX2-3Q8TAU0 364 aa28.53■■■□□ 2.16
COL27A1-208ENST00000494780 SMCR8Q8TEV9 937 aaPredicted RBP28.53■■■□□ 2.16
COL27A1-208ENST00000494780 DBNDD2Q9BQY9 259 aa28.53■■■□□ 2.16
COL27A1-208ENST00000494780 TBC1D2Q9BYX2 928 aa28.53■■■□□ 2.16
COL27A1-208ENST00000494780 MGAMO43451 1857 aa28.53■■■□□ 2.16
COL27A1-208ENST00000494780 MKI67P46013 3256 aaKnown RBP28.53■■■□□ 2.16
Retrieved 100 of 20,778 RNA–protein pairs in 135.8 ms