RNA–Protein interactions for RNA: ENST00000482460.1

CYTH3-208, Transcript of cytohesin 3, human

TSL 3

Gene CYTH3, Length 557 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CYTH3-208	ENST00000482460	CCDC8	Q9H0W5	538 aa	Predicted RBP	27.86	■■■□□ 2.05
CYTH3-208	ENST00000482460	DDX4	Q9NQI0	724 aa	Known RBP	27.86	■■■□□ 2.05
CYTH3-208	ENST00000482460	ZBTB40	Q9NUA8	1239 aa		27.86	■■■□□ 2.05
CYTH3-208	ENST00000482460	EXOC6B	Q9Y2D4	811 aa		27.86	■■■□□ 2.05
CYTH3-208	ENST00000482460	IRF6	O14896	467 aa		27.85	■■■□□ 2.05
CYTH3-208	ENST00000482460	PPAT	Q06203	517 aa		27.85	■■■□□ 2.05
CYTH3-208	ENST00000482460	CRHR2	Q13324	411 aa		27.85	■■■□□ 2.05
CYTH3-208	ENST00000482460	HSP90AB4P	Q58FF6	505 aa		27.85	■■■□□ 2.05
CYTH3-208	ENST00000482460	SH3BP5L	Q7L8J4	393 aa		27.85	■■■□□ 2.05
CYTH3-208	ENST00000482460	ZSCAN29	Q8IWY8	852 aa	Predicted RBP	27.85	■■■□□ 2.05
CYTH3-208	ENST00000482460	CHMP4B	Q9H444	224 aa	Known RBP	27.85	■■■□□ 2.05
CYTH3-208	ENST00000482460	DOCK2	Q92608	1830 aa		27.84	■■■□□ 2.05
CYTH3-208	ENST00000482460	NPM3	O75607	178 aa	Known RBP	27.84	■■■□□ 2.05
CYTH3-208	ENST00000482460	CYP2E1	P05181	493 aa	Predicted RBP	27.84	■■■□□ 2.05
CYTH3-208	ENST00000482460	CETP	P11597	493 aa		27.84	■■■□□ 2.05
CYTH3-208	ENST00000482460	PICALM	Q13492	652 aa		27.84	■■■□□ 2.05
CYTH3-208	ENST00000482460	TLR7	Q9NYK1	1049 aa	Known RBP	27.84	■■■□□ 2.05
CYTH3-208	ENST00000482460	ATRNL1	Q5VV63	1379 aa		27.84	■■■□□ 2.05
CYTH3-208	ENST00000482460	DDTL	A6NHG4	134 aa	Predicted RBP	27.83	■■■□□ 2.05
CYTH3-208	ENST00000482460	IGSF3	O75054	1194 aa		27.83	■■■□□ 2.05
CYTH3-208	ENST00000482460	MAP3K10	Q02779	954 aa		27.83	■■■□□ 2.05
CYTH3-208	ENST00000482460	SNAPC2	Q13487	334 aa		27.83	■■■□□ 2.05
CYTH3-208	ENST00000482460	NOL9	Q5SY16	702 aa	Known RBP	27.83	■■■□□ 2.05
CYTH3-208	ENST00000482460	ZAP70	P43403	619 aa		27.82	■■■□□ 2.04
CYTH3-208	ENST00000482460	PHF20L1	A8MW92	1017 aa		27.81	■■■□□ 2.04
CYTH3-208	ENST00000482460	HMMR	O75330	724 aa		27.81	■■■□□ 2.04
CYTH3-208	ENST00000482460	NAA16	Q6N069	864 aa	Predicted RBP	27.81	■■■□□ 2.04
CYTH3-208	ENST00000482460	FAM43A	Q8N2R8	423 aa		27.81	■■■□□ 2.04
CYTH3-208	ENST00000482460	GOLGA6L2	Q8N9W4	650 aa	Predicted RBP	27.81	■■■□□ 2.04
CYTH3-208	ENST00000482460	PDE3A	Q14432	1141 aa		27.8	■■■□□ 2.04
CYTH3-208	ENST00000482460	TAF1C	Q15572	869 aa	Predicted RBP	27.8	■■■□□ 2.04
CYTH3-208	ENST00000482460	RHPN1	Q8TCX5	695 aa		27.8	■■■□□ 2.04
CYTH3-208	ENST00000482460	NOL10	Q9BSC4	688 aa	Known RBP	27.8	■■■□□ 2.04
CYTH3-208	ENST00000482460	ZFYVE28	Q9HCC9	887 aa		27.8	■■■□□ 2.04
CYTH3-208	ENST00000482460	ZCCHC17	Q9NP64	241 aa	Known RBP	27.8	■■■□□ 2.04
CYTH3-208	ENST00000482460	MYO5A	Q9Y4I1	1855 aa	Known RBP	27.8	■■■□□ 2.04
CYTH3-208	ENST00000482460	RGS19	P49795	217 aa		27.79	■■■□□ 2.04
CYTH3-208	ENST00000482460	AACS	Q86V21	672 aa		27.79	■■■□□ 2.04
CYTH3-208	ENST00000482460	SIRT2	Q8IXJ6	389 aa		27.79	■■■□□ 2.04
CYTH3-208	ENST00000482460	KCNH4	Q9UQ05	1017 aa		27.79	■■■□□ 2.04
CYTH3-208	ENST00000482460	BTBD19	C9JJ37	291 aa		27.78	■■■□□ 2.04
CYTH3-208	ENST00000482460	BAG3	O95817	575 aa		27.78	■■■□□ 2.04
CYTH3-208	ENST00000482460	FBXO46	Q6PJ61	603 aa	Predicted RBP	27.78	■■■□□ 2.04
CYTH3-208	ENST00000482460	TEX11	Q8IYF3	940 aa		27.78	■■■□□ 2.04
CYTH3-208	ENST00000482460	ERO1A	Q96HE7	468 aa		27.78	■■■□□ 2.04
CYTH3-208	ENST00000482460	PIH1D3	Q9NQM4	214 aa	Known RBP	27.78	■■■□□ 2.04
CYTH3-208	ENST00000482460	HPS5	Q9UPZ3	1129 aa		27.78	■■■□□ 2.04
CYTH3-208	ENST00000482460	MAST2	Q6P0Q8	1798 aa		27.78	■■■□□ 2.04
CYTH3-208	ENST00000482460	TBC1D12	O60347	775 aa		27.77	■■■□□ 2.04
CYTH3-208	ENST00000482460	PPP4C	P60510	307 aa		27.77	■■■□□ 2.04
CYTH3-208	ENST00000482460	SP3	Q02447	781 aa		27.77	■■■□□ 2.04
CYTH3-208	ENST00000482460	SCYL3	Q8IZE3	742 aa		27.77	■■■□□ 2.04
CYTH3-208	ENST00000482460	KIF1BP	Q96EK5	621 aa		27.77	■■■□□ 2.04
CYTH3-208	ENST00000482460	IL1RAPL2	Q9NP60	686 aa		27.77	■■■□□ 2.04
CYTH3-208	ENST00000482460	PLCG2	P16885	1265 aa		27.76	■■■□□ 2.03
CYTH3-208	ENST00000482460	C20orf194	Q5TEA3	1177 aa		27.76	■■■□□ 2.03
CYTH3-208	ENST00000482460	SH3RF3	Q8TEJ3	882 aa	Predicted RBP	27.76	■■■□□ 2.03
CYTH3-208	ENST00000482460	OSBPL5	Q9H0X9	879 aa	Predicted RBP	27.76	■■■□□ 2.03
CYTH3-208	ENST00000482460	AATF	Q9NY61	560 aa	Known RBP eCLIP	27.76	■■■□□ 2.03
CYTH3-208	ENST00000482460	COL2A1	P02458	1487 aa	Predicted RBP	27.76	■■■□□ 2.03
CYTH3-208	ENST00000482460	CTNND1	O60716	968 aa	Known RBP	27.75	■■■□□ 2.03
CYTH3-208	ENST00000482460	SLURP2	P0DP57	97 aa		27.75	■■■□□ 2.03
CYTH3-208	ENST00000482460	OTOP1	Q7RTM1	612 aa		27.75	■■■□□ 2.03
CYTH3-208	ENST00000482460	CLASRP	Q8N2M8	674 aa	Known RBP	27.75	■■■□□ 2.03
CYTH3-208	ENST00000482460	TRIM17	Q9Y577	477 aa		27.75	■■■□□ 2.03
CYTH3-208	ENST00000482460	ADGRA1	Q86SQ6	560 aa		27.74	■■■□□ 2.03
CYTH3-208	ENST00000482460	CD99L2	Q8TCZ2	262 aa		27.74	■■■□□ 2.03
CYTH3-208	ENST00000482460	PICK1	Q9NRD5	415 aa		27.74	■■■□□ 2.03
CYTH3-208	ENST00000482460	APBB1	O00213	710 aa		27.73	■■■□□ 2.03
CYTH3-208	ENST00000482460	CXCL11	O14625	94 aa		27.73	■■■□□ 2.03
CYTH3-208	ENST00000482460	RAB11FIP3	O75154	756 aa		27.73	■■■□□ 2.03
CYTH3-208	ENST00000482460	PTPRA	P18433	802 aa		27.73	■■■□□ 2.03
CYTH3-208	ENST00000482460	XPO5	Q9HAV4	1204 aa	Known RBP eCLIP	27.73	■■■□□ 2.03
CYTH3-208	ENST00000482460	TLR2	O60603	784 aa		27.72	■■■□□ 2.03
CYTH3-208	ENST00000482460	IDH1	O75874	414 aa	Known RBP	27.72	■■■□□ 2.03
CYTH3-208	ENST00000482460	ANKRD23	Q86SG2	305 aa		27.72	■■■□□ 2.03
CYTH3-208	ENST00000482460	ZHX2	Q9Y6X8	837 aa		27.72	■■■□□ 2.03
CYTH3-208	ENST00000482460	CYP7A1	P22680	504 aa		27.71	■■■□□ 2.03
CYTH3-208	ENST00000482460	MOGS	Q13724	837 aa		27.71	■■■□□ 2.03
CYTH3-208	ENST00000482460	EFCC1	Q9HA90	598 aa		27.71	■■■□□ 2.03
CYTH3-208	ENST00000482460	NDUFB9	Q9Y6M9	179 aa		27.71	■■■□□ 2.03
CYTH3-208	ENST00000482460	TGFBRAP1	Q8WUH2	860 aa		27.7	■■■□□ 2.02
CYTH3-208	ENST00000482460	DHX36	Q9H2U1	1008 aa	Known RBP	27.7	■■■□□ 2.02
CYTH3-208	ENST00000482460	ANTXR1	Q9H6X2	564 aa		27.7	■■■□□ 2.02
CYTH3-208	ENST00000482460	AFG3L2	Q9Y4W6	797 aa		27.7	■■■□□ 2.02
CYTH3-208	ENST00000482460	DOCK1	Q14185	1865 aa		27.7	■■■□□ 2.02
CYTH3-208	ENST00000482460	CDK5RAP2	Q96SN8	1893 aa		27.7	■■■□□ 2.02
CYTH3-208	ENST00000482460	IFIT2	P09913	472 aa	Known RBP	27.69	■■■□□ 2.02
CYTH3-208	ENST00000482460	MLLT1	Q03111	559 aa	Predicted RBP	27.69	■■■□□ 2.02
CYTH3-208	ENST00000482460	TMED8	Q6PL24	325 aa	Predicted RBP	27.69	■■■□□ 2.02
CYTH3-208	ENST00000482460	PI4KB	Q9UBF8	816 aa		27.69	■■■□□ 2.02
CYTH3-208	ENST00000482460	FAM196B	A6NMK8	535 aa		27.68	■■■□□ 2.02
CYTH3-208	ENST00000482460	PDHX	O00330	501 aa		27.68	■■■□□ 2.02
CYTH3-208	ENST00000482460	MAP3K12	Q12852	859 aa		27.68	■■■□□ 2.02
CYTH3-208	ENST00000482460	ARHGEF6	Q15052	776 aa		27.68	■■■□□ 2.02
CYTH3-208	ENST00000482460	HERC5	Q9UII4	1024 aa	Known RBP	27.68	■■■□□ 2.02
CYTH3-208	ENST00000482460	FOCAD	Q5VW36	1801 aa		27.68	■■■□□ 2.02
CYTH3-208	ENST00000482460	SOX10	P56693	466 aa		27.67	■■■□□ 2.02
CYTH3-208	ENST00000482460	DYNLL1	P63167	89 aa	Known RBP	27.67	■■■□□ 2.02
CYTH3-208	ENST00000482460	CAP1	Q01518	475 aa		27.67	■■■□□ 2.02

Retrieved 100 of 20,778 RNA–protein pairs in 29.3 ms