RNA–Protein interactions for RNA: ENST00000478746.1

VIM-204, Transcript of vimentin, humanhuman

TSL 2

Gene VIM, Length 757 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIM-204ENST00000478746 PTPRAP18433 802 aa21.5■■□□□ 1.03
VIM-204ENST00000478746 IRF5Q13568 498 aa21.5■■□□□ 1.03
VIM-204ENST00000478746 SCYL3Q8IZE3 742 aa21.5■■□□□ 1.03
VIM-204ENST00000478746 LRCH3Q96II8 777 aa21.5■■□□□ 1.03
VIM-204ENST00000478746 SLC45A1Q9Y2W3 748 aa21.5■■□□□ 1.03
VIM-204ENST00000478746 AFG3L2Q9Y4W6 797 aa21.5■■□□□ 1.03
VIM-204ENST00000478746 PRDX5P30044 214 aa21.49■■□□□ 1.03
VIM-204ENST00000478746 MRS2Q9HD23 443 aa21.49■■□□□ 1.03
VIM-204ENST00000478746 EYA2O00167 538 aa21.48■■□□□ 1.03
VIM-204ENST00000478746 SMCR8Q8TEV9 937 aaPredicted RBP21.48■■□□□ 1.03
VIM-204ENST00000478746 PAWRQ96IZ0 340 aaKnown RBP21.48■■□□□ 1.03
VIM-204ENST00000478746 PAK6Q9NQU5 681 aaPredicted RBP21.48■■□□□ 1.03
VIM-204ENST00000478746 TAOK2Q9UL54 1235 aa21.48■■□□□ 1.03
VIM-204ENST00000478746 ZSCAN29Q8IWY8 852 aaPredicted RBP21.47■■□□□ 1.03
VIM-204ENST00000478746 COA7Q96BR5 231 aa21.47■■□□□ 1.03
VIM-204ENST00000478746 CRISPLD2Q9H0B8 497 aa21.47■■□□□ 1.03
VIM-204ENST00000478746 GNL3LQ9NVN8 582 aaKnown RBP21.47■■□□□ 1.03
VIM-204ENST00000478746 LRRFIP2Q9Y608 721 aaKnown RBP21.47■■□□□ 1.03
VIM-204ENST00000478746 MYH13Q9UKX3 1938 aa21.47■■□□□ 1.03
VIM-204ENST00000478746 ENTPD3O75355 529 aa21.46■■□□□ 1.03
VIM-204ENST00000478746 RGS3P49796 1198 aa21.46■■□□□ 1.03
VIM-204ENST00000478746 NECAB2Q7Z6G3 386 aa21.46■■□□□ 1.03
VIM-204ENST00000478746 USP44Q9H0E7 712 aa21.46■■□□□ 1.03
VIM-204ENST00000478746 IDI2Q9BXS1 227 aa21.45■■□□□ 1.02
VIM-204ENST00000478746 TRIM75PA6NK02 468 aa21.44■■□□□ 1.02
VIM-204ENST00000478746 CTNND1O60716 968 aaKnown RBP21.44■■□□□ 1.02
VIM-204ENST00000478746 RFX5P48382 616 aaPredicted RBP21.44■■□□□ 1.02
VIM-204ENST00000478746 MAP3K10Q02779 954 aa21.44■■□□□ 1.02
VIM-204ENST00000478746 ANKRD13CQ8N6S4 541 aa21.44■■□□□ 1.02
VIM-204ENST00000478746 DENND2AQ9ULE3 1009 aa21.44■■□□□ 1.02
VIM-204ENST00000478746 DOCK3Q8IZD9 2030 aa21.44■■□□□ 1.02
VIM-204ENST00000478746 ATRNL1Q5VV63 1379 aa21.44■■□□□ 1.02
VIM-204ENST00000478746 BMP8BP34820 402 aa21.43■■□□□ 1.02
VIM-204ENST00000478746 SH3BP5LQ7L8J4 393 aa21.43■■□□□ 1.02
VIM-204ENST00000478746 ATG9AQ7Z3C6 839 aa21.43■■□□□ 1.02
VIM-204ENST00000478746 MRPL50Q8N5N7 158 aaKnown RBP21.43■■□□□ 1.02
VIM-204ENST00000478746 AGTPBP1Q9UPW5 1226 aa21.43■■□□□ 1.02
VIM-204ENST00000478746 SALL1Q9NSC2 1324 aa21.43■■□□□ 1.02
VIM-204ENST00000478746 LAMA3Q16787 3333 aa21.43■■□□□ 1.02
VIM-204ENST00000478746 ATP2B3Q16720 1220 aa21.42■■□□□ 1.02
VIM-204ENST00000478746 DIS3LQ8TF46 1054 aaKnown RBP21.42■■□□□ 1.02
VIM-204ENST00000478746 GDF15Q99988 308 aa21.42■■□□□ 1.02
VIM-204ENST00000478746 XRN2Q9H0D6 950 aaKnown RBP eCLIP21.42■■□□□ 1.02
VIM-204ENST00000478746 CEP126Q9P2H0 1117 aa21.42■■□□□ 1.02
VIM-204ENST00000478746 PTPRCP08575 1304 aa21.41■■□□□ 1.02
VIM-204ENST00000478746 DDTLA6NHG4 134 aaPredicted RBP21.41■■□□□ 1.02
VIM-204ENST00000478746 SEMA3EO15041 775 aa21.41■■□□□ 1.02
VIM-204ENST00000478746 MNX1P50219 401 aaPredicted RBP21.41■■□□□ 1.02
VIM-204ENST00000478746 GPR153Q6NV75 609 aa21.41■■□□□ 1.02
VIM-204ENST00000478746 C7orf61Q8IZ16 206 aa21.41■■□□□ 1.02
VIM-204ENST00000478746 ANKLE1Q8NAG6 615 aa21.41■■□□□ 1.02
VIM-204ENST00000478746 PNMA3Q9UL41 463 aa21.41■■□□□ 1.02
VIM-204ENST00000478746 SLURP2P0DP57 97 aa21.4■■□□□ 1.02
VIM-204ENST00000478746 FAM110CQ1W6H9 321 aa21.4■■□□□ 1.02
VIM-204ENST00000478746 ZGPATQ8N5A5 531 aaKnown RBP21.4■■□□□ 1.02
VIM-204ENST00000478746 DEFB123Q8N688 67 aa21.4■■□□□ 1.02
VIM-204ENST00000478746 SIL1Q9H173 461 aa21.4■■□□□ 1.02
VIM-204ENST00000478746 ZMYND8Q9ULU4 1186 aaPredicted RBP21.4■■□□□ 1.02
VIM-204ENST00000478746 MYH2Q9UKX2 1941 aa21.39■■□□□ 1.02
VIM-204ENST00000478746 DOCK2Q92608 1830 aa21.39■■□□□ 1.02
VIM-204ENST00000478746 PHKA1P46020 1223 aa21.39■■□□□ 1.01
VIM-204ENST00000478746 TREML2Q5T2D2 321 aa21.39■■□□□ 1.01
VIM-204ENST00000478746 CCDC84Q86UT8 332 aaPredicted RBP21.39■■□□□ 1.01
VIM-204ENST00000478746 SLF2Q8IX21 1173 aa21.39■■□□□ 1.01
VIM-204ENST00000478746 FRMD4AQ9P2Q2 1039 aaPredicted RBP21.39■■□□□ 1.01
VIM-204ENST00000478746 FBXO3Q9UK99 471 aa21.39■■□□□ 1.01
VIM-204ENST00000478746 PTPRFP10586 1907 aa21.39■■□□□ 1.01
VIM-204ENST00000478746 ALPK3Q96L96 1907 aa21.39■■□□□ 1.01
VIM-204ENST00000478746 GAKO14976 1311 aa21.38■■□□□ 1.01
VIM-204ENST00000478746 HMGCRP04035 888 aa21.38■■□□□ 1.01
VIM-204ENST00000478746 PICALMQ13492 652 aa21.38■■□□□ 1.01
VIM-204ENST00000478746 DZIP1Q86YF9 867 aaKnown RBP21.38■■□□□ 1.01
VIM-204ENST00000478746 NBPF3Q9H094 633 aa21.38■■□□□ 1.01
VIM-204ENST00000478746 HMX1Q9NP08 348 aaPredicted RBP21.38■■□□□ 1.01
VIM-204ENST00000478746 DDX4Q9NQI0 724 aaKnown RBP21.38■■□□□ 1.01
VIM-204ENST00000478746 CUL9Q8IWT3 2517 aa21.38■■□□□ 1.01
VIM-204ENST00000478746 RPTORQ8N122 1335 aa21.37■■□□□ 1.01
VIM-204ENST00000478746 CIAO1O76071 339 aa21.37■■□□□ 1.01
VIM-204ENST00000478746 GCLCP48506 637 aaPredicted RBP21.37■■□□□ 1.01
VIM-204ENST00000478746 PROCA1Q8NCQ7 364 aaPredicted RBP21.37■■□□□ 1.01
VIM-204ENST00000478746 FAM163AQ96GL9 167 aaPredicted RBP21.37■■□□□ 1.01
VIM-204ENST00000478746 ABCF2Q9UG63 623 aa21.37■■□□□ 1.01
VIM-204ENST00000478746 PHIPQ8WWQ0 1821 aa21.36■■□□□ 1.01
VIM-204ENST00000478746 XPO5Q9HAV4 1204 aaKnown RBP eCLIP21.36■■□□□ 1.01
VIM-204ENST00000478746 GJD2Q9UKL4 321 aa21.36■■□□□ 1.01
VIM-204ENST00000478746 DOCK1Q14185 1865 aa21.35■■□□□ 1.01
VIM-204ENST00000478746 TBC1D12O60347 775 aa21.35■■□□□ 1.01
VIM-204ENST00000478746 SYN1P17600 705 aa21.35■■□□□ 1.01
VIM-204ENST00000478746 BTDP43251 543 aa21.35■■□□□ 1.01
VIM-204ENST00000478746 SPP2Q13103 211 aa21.35■■□□□ 1.01
VIM-204ENST00000478746 PABPC4Q13310 644 aaKnown RBP eCLIP21.35■■□□□ 1.01
VIM-204ENST00000478746 LRIT3Q3SXY7 679 aa21.35■■□□□ 1.01
VIM-204ENST00000478746 SPTY2D1Q68D10 685 aaPredicted RBP21.35■■□□□ 1.01
VIM-204ENST00000478746 CCDC102BQ68D86 513 aa21.35■■□□□ 1.01
VIM-204ENST00000478746 Q7L0L9 218 aa21.35■■□□□ 1.01
VIM-204ENST00000478746 RFX7Q2KHR2 1363 aa21.35■■□□□ 1.01
VIM-204ENST00000478746 ZBTB22O15209 634 aa21.34■■□□□ 1.01
VIM-204ENST00000478746 IL15P40933 162 aaPredicted RBP21.34■■□□□ 1.01
VIM-204ENST00000478746 OSBPL5Q9H0X9 879 aaPredicted RBP21.34■■□□□ 1.01
VIM-204ENST00000478746 C11orf49Q9H6J7 331 aa21.34■■□□□ 1.01
Retrieved 100 of 20,778 RNA–protein pairs in 78.4 ms