RNA–Protein interactions for RNA: ENST00000473829.1

PTCD3-210, Transcript of pentatricopeptide repeat domain 3, humanhuman

TSL 3

Gene PTCD3, Length 587 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCD3-210ENST00000473829 TEX11Q8IYF3 940 aa23.04■■□□□ 1.28
PTCD3-210ENST00000473829 SLC10A4Q96EP9 437 aa23.04■■□□□ 1.28
PTCD3-210ENST00000473829 WNK4Q96J92 1243 aa23.04■■□□□ 1.28
PTCD3-210ENST00000473829 HAUS7Q99871 368 aa23.04■■□□□ 1.28
PTCD3-210ENST00000473829 TSKSQ9UJT2 592 aa23.04■■□□□ 1.28
PTCD3-210ENST00000473829 UNCXA6NJT0 531 aa23.03■■□□□ 1.28
PTCD3-210ENST00000473829 HSPA8P11142 646 aaKnown RBP23.03■■□□□ 1.28
PTCD3-210ENST00000473829 IRX6P78412 446 aaPredicted RBP23.03■■□□□ 1.28
PTCD3-210ENST00000473829 MAP3K12Q12852 859 aa23.03■■□□□ 1.28
PTCD3-210ENST00000473829 TTF1Q15361 905 aaPredicted RBP23.03■■□□□ 1.28
PTCD3-210ENST00000473829 OTUD7AQ8TE49 926 aaPredicted RBP23.03■■□□□ 1.28
PTCD3-210ENST00000473829 HOOK2Q96ED9 719 aa23.03■■□□□ 1.28
PTCD3-210ENST00000473829 WRNIP1Q96S55 665 aa23.03■■□□□ 1.28
PTCD3-210ENST00000473829 ELP3Q9H9T3 547 aa23.03■■□□□ 1.28
PTCD3-210ENST00000473829 ECHDC1Q9NTX5 307 aa23.03■■□□□ 1.28
PTCD3-210ENST00000473829 PAG1Q9NWQ8 432 aa23.03■■□□□ 1.28
PTCD3-210ENST00000473829 NPM3O75607 178 aaKnown RBP23.02■■□□□ 1.28
PTCD3-210ENST00000473829 BAG3O95817 575 aa23.02■■□□□ 1.28
PTCD3-210ENST00000473829 MAP4K4O95819 1239 aaPredicted RBP23.02■■□□□ 1.28
PTCD3-210ENST00000473829 MAP3K9P80192 1104 aa23.02■■□□□ 1.28
PTCD3-210ENST00000473829 DCAF15Q66K64 600 aa23.02■■□□□ 1.28
PTCD3-210ENST00000473829 MIGA1Q8NAN2 632 aa23.02■■□□□ 1.28
PTCD3-210ENST00000473829 CNKSR2Q8WXI2 1034 aa23.02■■□□□ 1.28
PTCD3-210ENST00000473829 NOL10Q9BSC4 688 aaKnown RBP23.02■■□□□ 1.28
PTCD3-210ENST00000473829 ZNF341Q9BYN7 854 aa23.02■■□□□ 1.28
PTCD3-210ENST00000473829 COL2A1P02458 1487 aaPredicted RBP23.02■■□□□ 1.28
PTCD3-210ENST00000473829 PDE6AP16499 860 aa23.01■■□□□ 1.27
PTCD3-210ENST00000473829 CTCFP49711 727 aaPredicted RBP23.01■■□□□ 1.27
PTCD3-210ENST00000473829 ZSCAN29Q8IWY8 852 aaPredicted RBP23.01■■□□□ 1.27
PTCD3-210ENST00000473829 ZKSCAN4Q969J2 545 aaPredicted RBP23.01■■□□□ 1.27
PTCD3-210ENST00000473829 BEGAINQ9BUH8 593 aa23.01■■□□□ 1.27
PTCD3-210ENST00000473829 OSBPL5Q9H0X9 879 aaPredicted RBP23.01■■□□□ 1.27
PTCD3-210ENST00000473829 SNCAIPQ9Y6H5 919 aa23.01■■□□□ 1.27
PTCD3-210ENST00000473829 INPP5BP32019 993 aa23■■□□□ 1.27
PTCD3-210ENST00000473829 LBX1P52954 281 aa23■■□□□ 1.27
PTCD3-210ENST00000473829 SLFNL1Q499Z3 407 aa23■■□□□ 1.27
PTCD3-210ENST00000473829 OPTNQ96CV9 577 aa23■■□□□ 1.27
PTCD3-210ENST00000473829 TCRBV5S4A2TA0A5A2 114 aa22.99■■□□□ 1.27
PTCD3-210ENST00000473829 CHGBP05060 677 aa22.99■■□□□ 1.27
PTCD3-210ENST00000473829 ZBTB48P10074 688 aaPredicted RBP22.99■■□□□ 1.27
PTCD3-210ENST00000473829 PLCG2P16885 1265 aa22.99■■□□□ 1.27
PTCD3-210ENST00000473829 SLC9C2Q5TAH2 1124 aa22.99■■□□□ 1.27
PTCD3-210ENST00000473829 MAPKAPK5Q8IW41 473 aa22.99■■□□□ 1.27
PTCD3-210ENST00000473829 TGFBRAP1Q8WUH2 860 aa22.99■■□□□ 1.27
PTCD3-210ENST00000473829 GCC1Q96CN9 775 aa22.99■■□□□ 1.27
PTCD3-210ENST00000473829 ZNF112Q9UJU3 913 aa22.99■■□□□ 1.27
PTCD3-210ENST00000473829 CSADQ9Y600 493 aa22.99■■□□□ 1.27
PTCD3-210ENST00000473829 FLT1P17948 1338 aa22.99■■□□□ 1.27
PTCD3-210ENST00000473829 DDX60LQ5H9U9 1706 aaKnown RBP22.99■■□□□ 1.27
PTCD3-210ENST00000473829 IGHDP01880 384 aa22.98■■□□□ 1.27
PTCD3-210ENST00000473829 COL13A1Q5TAT6 717 aaPredicted RBP22.98■■□□□ 1.27
PTCD3-210ENST00000473829 ANKRD45Q5TZF3 282 aa22.98■■□□□ 1.27
PTCD3-210ENST00000473829 RIOK1Q9BRS2 568 aaKnown RBP22.98■■□□□ 1.27
PTCD3-210ENST00000473829 RNF186Q9NXI6 227 aa22.98■■□□□ 1.27
PTCD3-210ENST00000473829 SALL3Q9BXA9 1300 aa22.98■■□□□ 1.27
PTCD3-210ENST00000473829 ZNF532Q9HCE3 1301 aa22.98■■□□□ 1.27
PTCD3-210ENST00000473829 DOCK1Q14185 1865 aa22.97■■□□□ 1.27
PTCD3-210ENST00000473829 TM4SF4P48230 202 aa22.97■■□□□ 1.27
PTCD3-210ENST00000473829 MAP3K10Q02779 954 aa22.97■■□□□ 1.27
PTCD3-210ENST00000473829 TMED8Q6PL24 325 aaPredicted RBP22.97■■□□□ 1.27
PTCD3-210ENST00000473829 REM2Q8IYK8 340 aaPredicted RBP22.97■■□□□ 1.27
PTCD3-210ENST00000473829 GPATCH3Q96I76 525 aa22.97■■□□□ 1.27
PTCD3-210ENST00000473829 MYH1P12882 1939 aa22.97■■□□□ 1.27
PTCD3-210ENST00000473829 NAV1Q8NEY1 1877 aa22.96■■□□□ 1.27
PTCD3-210ENST00000473829 SPDYE5A6NIY4 337 aa22.96■■□□□ 1.27
PTCD3-210ENST00000473829 FAM196BA6NMK8 535 aa22.96■■□□□ 1.27
PTCD3-210ENST00000473829 PHF20L1A8MW92 1017 aa22.96■■□□□ 1.27
PTCD3-210ENST00000473829 CA12O43570 354 aa22.96■■□□□ 1.27
PTCD3-210ENST00000473829 PI4K2BQ8TCG2 481 aa22.96■■□□□ 1.27
PTCD3-210ENST00000473829 OTUD5Q96G74 571 aa22.96■■□□□ 1.27
PTCD3-210ENST00000473829 TRPA1O75762 1119 aa22.95■■□□□ 1.26
PTCD3-210ENST00000473829 ADD2P35612 726 aa22.95■■□□□ 1.26
PTCD3-210ENST00000473829 TTC41PQ6P2S7 1318 aa22.95■■□□□ 1.26
PTCD3-210ENST00000473829 SMC5Q8IY18 1101 aa22.95■■□□□ 1.26
PTCD3-210ENST00000473829 SAGE1Q9NXZ1 904 aa22.95■■□□□ 1.26
PTCD3-210ENST00000473829 MAGEB6P1A0A0J9YX57 407 aa22.94■■□□□ 1.26
PTCD3-210ENST00000473829 MANSC4A6NHS7 340 aaPredicted RBP22.94■■□□□ 1.26
PTCD3-210ENST00000473829 SREBF2Q12772 1141 aa22.94■■□□□ 1.26
PTCD3-210ENST00000473829 NOL9Q5SY16 702 aaKnown RBP22.94■■□□□ 1.26
PTCD3-210ENST00000473829 RWDD1Q9H446 243 aaPredicted RBP22.94■■□□□ 1.26
PTCD3-210ENST00000473829 PRDM10Q9NQV6 1147 aa22.94■■□□□ 1.26
PTCD3-210ENST00000473829 SAP30BPQ9UHR5 308 aaKnown RBP22.94■■□□□ 1.26
PTCD3-210ENST00000473829 ATAD5Q96QE3 1844 aa22.94■■□□□ 1.26
PTCD3-210ENST00000473829 MX1P20591 662 aa22.93■■□□□ 1.26
PTCD3-210ENST00000473829 ERO1BQ86YB8 467 aa22.93■■□□□ 1.26
PTCD3-210ENST00000473829 LCORLQ8N3X6 602 aa22.93■■□□□ 1.26
PTCD3-210ENST00000473829 MS4A4AQ96JQ5 239 aa22.93■■□□□ 1.26
PTCD3-210ENST00000473829 PALD1Q9ULE6 856 aa22.93■■□□□ 1.26
PTCD3-210ENST00000473829 PHIPQ8WWQ0 1821 aa22.93■■□□□ 1.26
PTCD3-210ENST00000473829 IGF2BP3O00425 579 aaKnown RBP eCLIP22.92■■□□□ 1.26
PTCD3-210ENST00000473829 TBC1D12O60347 775 aa22.92■■□□□ 1.26
PTCD3-210ENST00000473829 SLC4A8Q2Y0W8 1093 aa22.92■■□□□ 1.26
PTCD3-210ENST00000473829 CERS3Q8IU89 383 aa22.92■■□□□ 1.26
PTCD3-210ENST00000473829 DDX24Q9GZR7 859 aaKnown RBP eCLIP22.92■■□□□ 1.262e-8■■■■□ 22.3
PTCD3-210ENST00000473829 CASP8AP2Q9UKL3 1982 aa22.92■■□□□ 1.26
PTCD3-210ENST00000473829 USP5P45974 858 aa22.91■■□□□ 1.26
PTCD3-210ENST00000473829 B4GALNT3Q6L9W6 998 aa22.91■■□□□ 1.26
PTCD3-210ENST00000473829 PTPN18Q99952 460 aa22.91■■□□□ 1.26
PTCD3-210ENST00000473829 LNPKQ9C0E8 428 aa22.91■■□□□ 1.26
PTCD3-210ENST00000473829 DHX36Q9H2U1 1008 aaKnown RBP22.91■■□□□ 1.26
Retrieved 100 of 20,778 RNA–protein pairs in 68.7 ms