RNA–Protein interactions for RNA: ENST00000469550.6

HDAC3-205, Transcript of histone deacetylase 3, humanhuman

TSL 1 (best)

Gene HDAC3, Length 1,952 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC3-205ENST00000469550 GOLGA6L19H0YKK7 550 aa11.17□□□□□ -0.62
HDAC3-205ENST00000469550 TRAF5O00463 557 aa11.17□□□□□ -0.62
HDAC3-205ENST00000469550 NR1I2O75469 434 aa11.17□□□□□ -0.62
HDAC3-205ENST00000469550 TUBB4AP04350 444 aa11.17□□□□□ -0.62
HDAC3-205ENST00000469550 RPS6KB1P23443 525 aa11.17□□□□□ -0.62
HDAC3-205ENST00000469550 FERMT3Q86UX7 667 aa11.17□□□□□ -0.62
HDAC3-205ENST00000469550 DNAJC25Q9H1X3 360 aa11.17□□□□□ -0.62
HDAC3-205ENST00000469550 CHMP3Q9Y3E7 222 aa11.17□□□□□ -0.62
HDAC3-205ENST00000469550 MAP2K2P36507 400 aa11.16□□□□□ -0.62
HDAC3-205ENST00000469550 LBX1P52954 281 aa11.16□□□□□ -0.62
HDAC3-205ENST00000469550 FMR1Q06787 632 aaKnown RBP eCLIP11.16□□□□□ -0.62
HDAC3-205ENST00000469550 RESTQ13127 1097 aa11.16□□□□□ -0.62
HDAC3-205ENST00000469550 FAM173BQ6P4H8 233 aa11.16□□□□□ -0.62
HDAC3-205ENST00000469550 DPF2Q92785 391 aa11.16□□□□□ -0.62
HDAC3-205ENST00000469550 IFIT2P09913 472 aaKnown RBP11.16□□□□□ -0.62
HDAC3-205ENST00000469550 KCNJ4P48050 445 aa11.16□□□□□ -0.62
HDAC3-205ENST00000469550 OS9Q13438 667 aaPredicted RBP11.16□□□□□ -0.62
HDAC3-205ENST00000469550 TOB2Q14106 344 aaPredicted RBP11.16□□□□□ -0.62
HDAC3-205ENST00000469550 DHX8Q14562 1220 aaKnown RBP11.16□□□□□ -0.62
HDAC3-205ENST00000469550 STX1AQ16623 288 aa11.16□□□□□ -0.62
HDAC3-205ENST00000469550 KMT5BQ4FZB7 885 aa11.16□□□□□ -0.62
HDAC3-205ENST00000469550 BICD2Q8TD16 824 aa11.16□□□□□ -0.62
HDAC3-205ENST00000469550 CELF1Q92879 486 aaKnown RBP11.16□□□□□ -0.62
HDAC3-205ENST00000469550 FAM89AQ96GI7 184 aa11.16□□□□□ -0.62
HDAC3-205ENST00000469550 TFIP11Q9UBB9 837 aaKnown RBP11.16□□□□□ -0.62
HDAC3-205ENST00000469550 IGSF3O75054 1194 aa11.15□□□□□ -0.62
HDAC3-205ENST00000469550 ALDH1L1O75891 902 aa11.15□□□□□ -0.62
HDAC3-205ENST00000469550 RAD17O75943 681 aa11.15□□□□□ -0.62
HDAC3-205ENST00000469550 SLU7O95391 586 aaKnown RBP11.15□□□□□ -0.62
HDAC3-205ENST00000469550 SKILP12757 684 aa11.15□□□□□ -0.62
HDAC3-205ENST00000469550 HSP90B1P14625 803 aaKnown RBP11.15□□□□□ -0.62
HDAC3-205ENST00000469550 RPS12P25398 132 aaKnown RBP11.15□□□□□ -0.62
HDAC3-205ENST00000469550 HIRAP54198 1017 aaPredicted RBP11.15□□□□□ -0.62
HDAC3-205ENST00000469550 GSDMDP57764 484 aa11.15□□□□□ -0.62
HDAC3-205ENST00000469550 KRT32Q14532 448 aa11.15□□□□□ -0.62
HDAC3-205ENST00000469550 NAA30Q147X3 362 aaPredicted RBP11.15□□□□□ -0.62
HDAC3-205ENST00000469550 ATL3Q6DD88 541 aa11.15□□□□□ -0.62
HDAC3-205ENST00000469550 SAPCD2Q86UD0 394 aa11.15□□□□□ -0.62
HDAC3-205ENST00000469550 ZNF215Q9UL58 517 aaPredicted RBP11.15□□□□□ -0.62
HDAC3-205ENST00000469550 SCN9AQ15858 1988 aa11.15□□□□□ -0.62
HDAC3-205ENST00000469550 MED23Q9ULK4 1368 aa11.15□□□□□ -0.63
HDAC3-205ENST00000469550 ATP5J2-PTCD1G3V325 749 aa11.14□□□□□ -0.63
HDAC3-205ENST00000469550 IRS4O14654 1257 aaPredicted RBP11.14□□□□□ -0.63
HDAC3-205ENST00000469550 KCNJ6P48051 423 aa11.14□□□□□ -0.63
HDAC3-205ENST00000469550 CCZ1BP86790 482 aa11.14□□□□□ -0.63
HDAC3-205ENST00000469550 CCZ1P86791 482 aaPredicted RBP11.14□□□□□ -0.63
HDAC3-205ENST00000469550 NMIQ13287 307 aaPredicted RBP11.14□□□□□ -0.63
HDAC3-205ENST00000469550 WASHC4Q2M389 1173 aa11.14□□□□□ -0.63
HDAC3-205ENST00000469550 CCAR2Q8N163 923 aaKnown RBP11.14□□□□□ -0.63
HDAC3-205ENST00000469550 ZBTB38Q8NAP3 1195 aaPredicted RBP11.14□□□□□ -0.63
HDAC3-205ENST00000469550 TRPM4Q8TD43 1214 aa11.14□□□□□ -0.63
HDAC3-205ENST00000469550 GPR101Q96P66 508 aaPredicted RBP11.14□□□□□ -0.63
HDAC3-205ENST00000469550 EYA3Q99504 573 aa11.14□□□□□ -0.63
HDAC3-205ENST00000469550 IMPACTQ9P2X3 320 aa11.14□□□□□ -0.63
HDAC3-205ENST00000469550 CNOT7Q9UIV1 285 aaKnown RBP11.14□□□□□ -0.63
HDAC3-205ENST00000469550 RCOR1Q9UKL0 485 aa11.14□□□□□ -0.63
HDAC3-205ENST00000469550 PI4KAP2A4QPH2 592 aa11.14□□□□□ -0.63
HDAC3-205ENST00000469550 H7C1D1 291 aa11.14□□□□□ -0.63
HDAC3-205ENST00000469550 CELF2O95319 508 aaKnown RBP11.14□□□□□ -0.63
HDAC3-205ENST00000469550 GPSM2P81274 684 aa11.14□□□□□ -0.63
HDAC3-205ENST00000469550 CYP4F22Q6NT55 531 aa11.14□□□□□ -0.63
HDAC3-205ENST00000469550 MICALL2Q8IY33 904 aa11.14□□□□□ -0.63
HDAC3-205ENST00000469550 PI4KAP1Q8N8J0 262 aa11.14□□□□□ -0.63
HDAC3-205ENST00000469550 GTF3C6Q969F1 213 aa11.14□□□□□ -0.63
HDAC3-205ENST00000469550 GLIS2Q9BZE0 524 aaPredicted RBP11.14□□□□□ -0.63
HDAC3-205ENST00000469550 OSBPL5Q9H0X9 879 aaPredicted RBP11.14□□□□□ -0.63
HDAC3-205ENST00000469550 L2HGDHQ9H9P8 463 aa11.14□□□□□ -0.63
HDAC3-205ENST00000469550 POLLQ9UGP5 575 aa11.14□□□□□ -0.63
HDAC3-205ENST00000469550 MYH3P11055 1940 aa11.13□□□□□ -0.63
HDAC3-205ENST00000469550 A0A0U1RQG5 324 aaPredicted RBP11.13□□□□□ -0.63
HDAC3-205ENST00000469550 CCDC69A6NI79 296 aa11.13□□□□□ -0.63
HDAC3-205ENST00000469550 CA12O43570 354 aa11.13□□□□□ -0.63
HDAC3-205ENST00000469550 RPS8P62241 208 aaKnown RBP11.13□□□□□ -0.63
HDAC3-205ENST00000469550 FGD1P98174 961 aa11.13□□□□□ -0.63
HDAC3-205ENST00000469550 CCDC191Q8NCU4 936 aa11.13□□□□□ -0.63
HDAC3-205ENST00000469550 ZNF592Q92610 1267 aa11.13□□□□□ -0.63
HDAC3-205ENST00000469550 FAM227BQ96M60 508 aa11.13□□□□□ -0.63
HDAC3-205ENST00000469550 LLPHQ9BRT6 129 aaKnown RBP11.13□□□□□ -0.63
HDAC3-205ENST00000469550 ANO10Q9NW15 660 aa11.13□□□□□ -0.63
HDAC3-205ENST00000469550 RTL9Q8NET4 1388 aa11.13□□□□□ -0.63
HDAC3-205ENST00000469550 PSMD14O00487 310 aa11.12□□□□□ -0.63
HDAC3-205ENST00000469550 PCCAP05165 728 aaPredicted RBP11.12□□□□□ -0.63
HDAC3-205ENST00000469550 BMS1Q14692 1282 aaKnown RBP11.12□□□□□ -0.63
HDAC3-205ENST00000469550 FBXO38Q6PIJ6 1188 aa11.12□□□□□ -0.63
HDAC3-205ENST00000469550 RIC3Q7Z5B4 369 aa11.12□□□□□ -0.63
HDAC3-205ENST00000469550 TBC1D16Q8TBP0 767 aa11.12□□□□□ -0.63
HDAC3-205ENST00000469550 ZNF646O15015 1829 aaPredicted RBP11.12□□□□□ -0.63
HDAC3-205ENST00000469550 SHTN1A0MZ66 631 aa11.12□□□□□ -0.63
HDAC3-205ENST00000469550 USP27XA6NNY8 438 aa11.12□□□□□ -0.63
HDAC3-205ENST00000469550 BECN2A8MW95 431 aa11.12□□□□□ -0.63
HDAC3-205ENST00000469550 ECE2O60344 883 aa11.12□□□□□ -0.63
HDAC3-205ENST00000469550 DTNBO60941 627 aa11.12□□□□□ -0.63
HDAC3-205ENST00000469550 H2AFXP16104 143 aaPredicted RBP11.12□□□□□ -0.63
HDAC3-205ENST00000469550 ADD1P35611 737 aaKnown RBP11.12□□□□□ -0.63
HDAC3-205ENST00000469550 NAA16Q6N069 864 aaPredicted RBP11.12□□□□□ -0.63
HDAC3-205ENST00000469550 C11orf57Q6ZUT1 292 aaPredicted RBP11.12□□□□□ -0.63
HDAC3-205ENST00000469550 AACSQ86V21 672 aa11.12□□□□□ -0.63
HDAC3-205ENST00000469550 BEGAINQ9BUH8 593 aa11.12□□□□□ -0.63
HDAC3-205ENST00000469550 DBNDD1Q9H9R9 158 aa11.12□□□□□ -0.63
HDAC3-205ENST00000469550 CALCOCO1Q9P1Z2 691 aa11.12□□□□□ -0.63
Retrieved 100 of 20,778 RNA–protein pairs in 63.1 ms