RNA–Protein interactions for RNA: ENST00000454830.6

CLK3-203, Transcript of CDC like kinase 3, humanhuman

TSL 5

Gene CLK3, Length 3,787 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-203ENST00000454830 NSUN4Q96CB9 384 aaKnown RBP15.9■□□□□ 0.14
CLK3-203ENST00000454830 LAMA4Q16363 1823 aa15.9■□□□□ 0.14
CLK3-203ENST00000454830 SEMA3EO15041 775 aa15.9■□□□□ 0.14
CLK3-203ENST00000454830 SPTY2D1Q68D10 685 aaPredicted RBP15.9■□□□□ 0.14
CLK3-203ENST00000454830 CCAR1Q8IX12 1150 aaKnown RBP15.9■□□□□ 0.14
CLK3-203ENST00000454830 FBXO18Q8NFZ0 1043 aa15.9■□□□□ 0.14
CLK3-203ENST00000454830 COL5A3P25940 1745 aaPredicted RBP15.9■□□□□ 0.14
CLK3-203ENST00000454830 SLC27A3Q5K4L6 730 aa15.89■□□□□ 0.13
CLK3-203ENST00000454830 IQCA1Q86XH1 822 aa15.89■□□□□ 0.13
CLK3-203ENST00000454830 PGBD1Q96JS3 809 aa15.89■□□□□ 0.13
CLK3-203ENST00000454830 GGA1Q9UJY5 639 aa15.89■□□□□ 0.13
CLK3-203ENST00000454830 RGL2O15211 777 aa15.89■□□□□ 0.13
CLK3-203ENST00000454830 CCDC192P0DO97 292 aa15.89■□□□□ 0.13
CLK3-203ENST00000454830 STAG1Q8WVM7 1258 aa15.89■□□□□ 0.13
CLK3-203ENST00000454830 RIOK1Q9BRS2 568 aaKnown RBP15.89■□□□□ 0.13
CLK3-203ENST00000454830 TACC3Q9Y6A5 838 aa15.89■□□□□ 0.13
CLK3-203ENST00000454830 NR1I2O75469 434 aa15.89■□□□□ 0.13
CLK3-203ENST00000454830 GPSM2P81274 684 aa15.89■□□□□ 0.13
CLK3-203ENST00000454830 ZNF219Q9P2Y4 722 aaPredicted RBP15.89■□□□□ 0.13
CLK3-203ENST00000454830 EVCP57679 992 aa15.88■□□□□ 0.13
CLK3-203ENST00000454830 FAM47AQ5JRC9 791 aa15.88■□□□□ 0.13
CLK3-203ENST00000454830 USP25Q9UHP3 1055 aa15.88■□□□□ 0.13
CLK3-203ENST00000454830 LEMD3Q9Y2U8 911 aa15.88■□□□□ 0.13
CLK3-203ENST00000454830 ELP1O95163 1332 aa15.88■□□□□ 0.13
CLK3-203ENST00000454830 TNKSO95271 1327 aa15.88■□□□□ 0.13
CLK3-203ENST00000454830 WDR19Q8NEZ3 1342 aa15.88■□□□□ 0.13
CLK3-203ENST00000454830 COL1A1P02452 1464 aaPredicted RBP15.88■□□□□ 0.13
CLK3-203ENST00000454830 LRP5O75197 1615 aa15.88■□□□□ 0.13
CLK3-203ENST00000454830 UBE2Q2LH0YL09 131 aa15.88■□□□□ 0.13
CLK3-203ENST00000454830 SLC3A2P08195 630 aaKnown RBP15.88■□□□□ 0.13
CLK3-203ENST00000454830 FSIP1Q8NA03 581 aa15.88■□□□□ 0.13
CLK3-203ENST00000454830 TMX4Q9H1E5 349 aaPredicted RBP15.88■□□□□ 0.13
CLK3-203ENST00000454830 CYP2D6P10635 497 aa15.88■□□□□ 0.13
CLK3-203ENST00000454830 IFIT1BQ5T764 474 aaKnown RBP15.88■□□□□ 0.13
CLK3-203ENST00000454830 KRT40Q6A162 431 aa15.88■□□□□ 0.13
CLK3-203ENST00000454830 SASS6Q6UVJ0 657 aa15.88■□□□□ 0.13
CLK3-203ENST00000454830 hCG_1642624A0A1W2PR95 340 aa15.87■□□□□ 0.13
CLK3-203ENST00000454830 KINO60870 393 aaKnown RBP15.87■□□□□ 0.13
CLK3-203ENST00000454830 WDR66Q8TBY9 1149 aa15.87■□□□□ 0.13
CLK3-203ENST00000454830 SALL1Q9NSC2 1324 aa15.87■□□□□ 0.13
CLK3-203ENST00000454830 TSPY2A6NKD2 308 aa15.87■□□□□ 0.13
CLK3-203ENST00000454830 F8W031 263 aaPredicted RBP15.87■□□□□ 0.13
CLK3-203ENST00000454830 SAFBQ15424 915 aaKnown RBP eCLIP15.87■□□□□ 0.13
CLK3-203ENST00000454830 AMOTL1Q8IY63 956 aa15.87■□□□□ 0.13
CLK3-203ENST00000454830 ZNF654Q8IZM8 581 aa15.87■□□□□ 0.13
CLK3-203ENST00000454830 EVX2Q03828 476 aa15.87■□□□□ 0.13
CLK3-203ENST00000454830 FBXL16Q8N461 479 aa15.87■□□□□ 0.13
CLK3-203ENST00000454830 ZNF384Q8TF68 577 aa15.87■□□□□ 0.13
CLK3-203ENST00000454830 DDX19AQ9NUU7 478 aaKnown RBP15.87■□□□□ 0.13
CLK3-203ENST00000454830 MARCKSP29966 332 aaPredicted RBP15.86■□□□□ 0.13
CLK3-203ENST00000454830 LIFRP42702 1097 aa15.86■□□□□ 0.13
CLK3-203ENST00000454830 DDR1Q08345 913 aa15.86■□□□□ 0.13
CLK3-203ENST00000454830 ZRSR1Q15695 479 aaKnown RBP15.86■□□□□ 0.13
CLK3-203ENST00000454830 SDF4Q9BRK5 362 aa15.86■□□□□ 0.13
CLK3-203ENST00000454830 FAM43AQ8N2R8 423 aa15.86■□□□□ 0.13
CLK3-203ENST00000454830 SAP30BPQ9UHR5 308 aaKnown RBP15.86■□□□□ 0.13
CLK3-203ENST00000454830 CLIC4Q9Y696 253 aa15.86■□□□□ 0.13
CLK3-203ENST00000454830 MSNP26038 577 aaKnown RBP15.86■□□□□ 0.13
CLK3-203ENST00000454830 CTR9Q6PD62 1173 aa15.86■□□□□ 0.13
CLK3-203ENST00000454830 CATIPQ7Z7H3 387 aa15.86■□□□□ 0.13
CLK3-203ENST00000454830 TMTC2Q8N394 836 aa15.86■□□□□ 0.13
CLK3-203ENST00000454830 ZNF622Q969S3 477 aaKnown RBP eCLIP15.86■□□□□ 0.132e-6■□□□□ 10.5
CLK3-203ENST00000454830 RRAGDQ9NQL2 400 aaPredicted RBP15.86■□□□□ 0.13
CLK3-203ENST00000454830 RREB1Q92766 1687 aa15.85■□□□□ 0.13
CLK3-203ENST00000454830 CCDC196A0A1B0GTZ2 297 aa15.85■□□□□ 0.13
CLK3-203ENST00000454830 USP17L8P0C7I0 530 aa15.85■□□□□ 0.13
CLK3-203ENST00000454830 KCNJ14Q9UNX9 436 aa15.85■□□□□ 0.13
CLK3-203ENST00000454830 ESPNB1AK53 854 aa15.85■□□□□ 0.13
CLK3-203ENST00000454830 BAG3O95817 575 aa15.85■□□□□ 0.13
CLK3-203ENST00000454830 RBM6P78332 1123 aaKnown RBP15.85■□□□□ 0.13
CLK3-203ENST00000454830 MYSM1Q5VVJ2 828 aa15.85■□□□□ 0.13
CLK3-203ENST00000454830 SGMS1Q86VZ5 419 aa15.85■□□□□ 0.13
CLK3-203ENST00000454830 MKNK2Q9HBH9 465 aa15.85■□□□□ 0.13
CLK3-203ENST00000454830 DCP1AQ9NPI6 582 aaPredicted RBP15.85■□□□□ 0.13
CLK3-203ENST00000454830 KIF28PB7ZC32 967 aa15.85■□□□□ 0.13
CLK3-203ENST00000454830 PDE4BQ07343 736 aa15.85■□□□□ 0.13
CLK3-203ENST00000454830 NHSQ6T4R5 1651 aa15.85■□□□□ 0.13
CLK3-203ENST00000454830 BCORQ6W2J9 1755 aa15.85■□□□□ 0.13
CLK3-203ENST00000454830 TGFBRAP1Q8WUH2 860 aa15.85■□□□□ 0.13
CLK3-203ENST00000454830 THSD7AQ9UPZ6 1657 aa15.84■□□□□ 0.13
CLK3-203ENST00000454830 A0A1B0GVL5 298 aa15.84■□□□□ 0.13
CLK3-203ENST00000454830 MAPKAPK5Q8IW41 473 aa15.84■□□□□ 0.13
CLK3-203ENST00000454830 ZSCAN10Q96SZ4 725 aaPredicted RBP15.84■□□□□ 0.13
CLK3-203ENST00000454830 NMT2O60551 498 aa15.84■□□□□ 0.13
CLK3-203ENST00000454830 FANCBQ8NB91 859 aa15.84■□□□□ 0.13
CLK3-203ENST00000454830 ERCC4Q92889 916 aaPredicted RBP15.84■□□□□ 0.13
CLK3-203ENST00000454830 BRIP1Q9BX63 1249 aa15.84■□□□□ 0.13
CLK3-203ENST00000454830 C4BP0C0L5 1744 aa15.84■□□□□ 0.13
CLK3-203ENST00000454830 KIF23Q02241 960 aaPredicted RBP15.84■□□□□ 0.13
CLK3-203ENST00000454830 GRIK5Q16478 980 aa15.84■□□□□ 0.13
CLK3-203ENST00000454830 MFSD14BQ5SR56 506 aa15.84■□□□□ 0.13
CLK3-203ENST00000454830 PROM2Q8N271 834 aa15.84■□□□□ 0.13
CLK3-203ENST00000454830 CD209Q9NNX6 404 aa15.84■□□□□ 0.13
CLK3-203ENST00000454830 RCOR1Q9UKL0 485 aa15.84■□□□□ 0.13
CLK3-203ENST00000454830 SPTLC2O15270 562 aa15.83■□□□□ 0.13
CLK3-203ENST00000454830 LDHCP07864 332 aa15.83■□□□□ 0.13
CLK3-203ENST00000454830 ATP2B4P23634 1241 aa15.83■□□□□ 0.13
CLK3-203ENST00000454830 TYRO3Q06418 890 aa15.83■□□□□ 0.13
CLK3-203ENST00000454830 BRAPQ7Z569 592 aa15.83■□□□□ 0.13
CLK3-203ENST00000454830 WASF1Q92558 559 aa15.83■□□□□ 0.13
Retrieved 100 of 20,778 RNA–protein pairs in 59.6 ms