RNA–Protein interactions for RNA: ENST00000389856.9

CCDC88C-203, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 1 (best) BASIC

Gene CCDC88C, Length 1,641 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-203ENST00000389856 PPIP5K2O43314 1243 aa21.37■■□□□ 1.01
CCDC88C-203ENST00000389856 DHX16O60231 1041 aaKnown RBP21.37■■□□□ 1.01
CCDC88C-203ENST00000389856 PFKFB2O60825 505 aa21.37■■□□□ 1.01
CCDC88C-203ENST00000389856 BTDP43251 543 aa21.37■■□□□ 1.01
CCDC88C-203ENST00000389856 EVCP57679 992 aa21.37■■□□□ 1.01
CCDC88C-203ENST00000389856 CTDSPL2Q05D32 466 aa21.37■■□□□ 1.01
CCDC88C-203ENST00000389856 MCTP1Q6DN14 999 aa21.37■■□□□ 1.01
CCDC88C-203ENST00000389856 LARP6Q9BRS8 491 aaKnown RBP21.37■■□□□ 1.01
CCDC88C-203ENST00000389856 TOMM22Q9NS69 142 aa21.37■■□□□ 1.01
CCDC88C-203ENST00000389856 LMBRD1Q9NUN5 540 aa21.37■■□□□ 1.01
CCDC88C-203ENST00000389856 ANGEL1Q9UNK9 670 aaKnown RBP21.37■■□□□ 1.01
CCDC88C-203ENST00000389856 WDR33Q9C0J8 1336 aaKnown RBP21.37■■□□□ 1.01
CCDC88C-203ENST00000389856 LARGE1O95461 756 aa21.37■■□□□ 1.01
CCDC88C-203ENST00000389856 DALRD3Q5D0E6 543 aaKnown RBP21.37■■□□□ 1.01
CCDC88C-203ENST00000389856 DBNDD1Q9H9R9 158 aa21.37■■□□□ 1.01
CCDC88C-203ENST00000389856 GRPEL1Q9HAV7 217 aa21.37■■□□□ 1.01
CCDC88C-203ENST00000389856 BAZ2AQ9UIF9 1905 aaKnown RBP21.36■■□□□ 1.01
CCDC88C-203ENST00000389856 NAV1Q8NEY1 1877 aa21.36■■□□□ 1.01
CCDC88C-203ENST00000389856 USP17L3A6NCW0 530 aa21.36■■□□□ 1.01
CCDC88C-203ENST00000389856 USP17L4A6NCW7 530 aa21.36■■□□□ 1.01
CCDC88C-203ENST00000389856 B4E1Z4 1266 aa21.36■■□□□ 1.01
CCDC88C-203ENST00000389856 PDE4BQ07343 736 aa21.36■■□□□ 1.01
CCDC88C-203ENST00000389856 USP17L1Q7RTZ2 530 aa21.36■■□□□ 1.01
CCDC88C-203ENST00000389856 MRIQ9BWK5 157 aa21.36■■□□□ 1.01
CCDC88C-203ENST00000389856 LRRC2Q9BYS8 371 aa21.36■■□□□ 1.01
CCDC88C-203ENST00000389856 ZNF287Q9HBT7 754 aa21.36■■□□□ 1.01
CCDC88C-203ENST00000389856 TTF2Q9UNY4 1162 aaKnown RBP21.36■■□□□ 1.01
CCDC88C-203ENST00000389856 NEDD4P46934 1319 aa21.35■■□□□ 1.01
CCDC88C-203ENST00000389856 USP17L12C9JPN9 530 aa21.35■■□□□ 1.01
CCDC88C-203ENST00000389856 USP17L21D6R901 530 aa21.35■■□□□ 1.01
CCDC88C-203ENST00000389856 KCNA3P22001 575 aa21.35■■□□□ 1.01
CCDC88C-203ENST00000389856 HDLBPQ00341 1268 aaKnown RBP21.35■■□□□ 1.01
CCDC88C-203ENST00000389856 APOBRQ0VD83 1088 aa21.35■■□□□ 1.01
CCDC88C-203ENST00000389856 CTR9Q6PD62 1173 aa21.35■■□□□ 1.01
CCDC88C-203ENST00000389856 HHIPL2Q6UWX4 724 aa21.35■■□□□ 1.01
CCDC88C-203ENST00000389856 TEX11Q8IYF3 940 aa21.35■■□□□ 1.01
CCDC88C-203ENST00000389856 TMTC2Q8N394 836 aa21.35■■□□□ 1.01
CCDC88C-203ENST00000389856 SH3RF3Q8TEJ3 882 aaPredicted RBP21.35■■□□□ 1.01
CCDC88C-203ENST00000389856 TEKT1Q969V4 418 aa21.35■■□□□ 1.01
CCDC88C-203ENST00000389856 MCM9Q9NXL9 1143 aa21.35■■□□□ 1.01
CCDC88C-203ENST00000389856 NAP1L2Q9ULW6 460 aaPredicted RBP21.35■■□□□ 1.01
CCDC88C-203ENST00000389856 MBD3O95983 291 aa21.34■■□□□ 1.01
CCDC88C-203ENST00000389856 GRIK5Q16478 980 aa21.34■■□□□ 1.01
CCDC88C-203ENST00000389856 AOC3Q16853 763 aa21.34■■□□□ 1.01
CCDC88C-203ENST00000389856 NECAB1Q8N987 351 aa21.34■■□□□ 1.01
CCDC88C-203ENST00000389856 MYO3BQ8WXR4 1341 aa21.34■■□□□ 1.01
CCDC88C-203ENST00000389856 KDM4AO75164 1064 aa21.33■■□□□ 1.01
CCDC88C-203ENST00000389856 GJB2P29033 226 aa21.33■■□□□ 1.01
CCDC88C-203ENST00000389856 LIFRP42702 1097 aa21.33■■□□□ 1.01
CCDC88C-203ENST00000389856 ANTXR2P58335 489 aa21.33■■□□□ 1.01
CCDC88C-203ENST00000389856 ZNF445P59923 1031 aa21.33■■□□□ 1.01
CCDC88C-203ENST00000389856 HMGN5P82970 282 aaKnown RBP21.33■■□□□ 1.01
CCDC88C-203ENST00000389856 STK3Q13188 491 aa21.33■■□□□ 1.01
CCDC88C-203ENST00000389856 COL9A3Q14050 684 aaPredicted RBP21.33■■□□□ 1.01
CCDC88C-203ENST00000389856 RRP12Q5JTH9 1297 aaKnown RBP21.33■■□□□ 1.01
CCDC88C-203ENST00000389856 SYNE3Q6ZMZ3 975 aa21.33■■□□□ 1.01
CCDC88C-203ENST00000389856 CHST3Q7LGC8 479 aa21.33■■□□□ 1.01
CCDC88C-203ENST00000389856 UBAC1Q9BSL1 405 aa21.33■■□□□ 1.01
CCDC88C-203ENST00000389856 SH2B2O14492 632 aaPredicted RBP21.33■■□□□ 1
CCDC88C-203ENST00000389856 IFIT3O14879 490 aaKnown RBP21.33■■□□□ 1
CCDC88C-203ENST00000389856 PKP1Q13835 747 aa21.33■■□□□ 1
CCDC88C-203ENST00000389856 TMEM67Q5HYA8 995 aa21.33■■□□□ 1
CCDC88C-203ENST00000389856 FAM43AQ8N2R8 423 aa21.33■■□□□ 1
CCDC88C-203ENST00000389856 DAGLAQ9Y4D2 1042 aa21.33■■□□□ 1
CCDC88C-203ENST00000389856 KLF18A0A0U1RQI7 1052 aa21.32■■□□□ 1
CCDC88C-203ENST00000389856 ORC4O43929 436 aa21.32■■□□□ 1
CCDC88C-203ENST00000389856 FGRP09769 529 aa21.32■■□□□ 1
CCDC88C-203ENST00000389856 CPLX2Q6PUV4 134 aaKnown RBP21.32■■□□□ 1
CCDC88C-203ENST00000389856 NFXL1Q6ZNB6 911 aa21.32■■□□□ 1
CCDC88C-203ENST00000389856 IQCA1Q86XH1 822 aa21.32■■□□□ 1
CCDC88C-203ENST00000389856 ATP6V1DQ9Y5K8 247 aa21.32■■□□□ 1
CCDC88C-203ENST00000389856 PSME4Q14997 1843 aa21.31■■□□□ 1
CCDC88C-203ENST00000389856 PDIA3P30101 505 aaKnown RBP21.31■■□□□ 1
CCDC88C-203ENST00000389856 DACT2Q5SW24 774 aa21.31■■□□□ 1
CCDC88C-203ENST00000389856 CYB5R4Q7L1T6 521 aa21.31■■□□□ 1
CCDC88C-203ENST00000389856 SGMS1Q86VZ5 419 aa21.31■■□□□ 1
CCDC88C-203ENST00000389856 LARGE2Q8N3Y3 721 aa21.31■■□□□ 1
CCDC88C-203ENST00000389856 CERS5Q8N5B7 392 aa21.31■■□□□ 1
CCDC88C-203ENST00000389856 ZSWIM5Q9P217 1185 aa21.31■■□□□ 1
CCDC88C-203ENST00000389856 BRCA1P38398 1863 aaKnown RBP21.3■■□□□ 1
CCDC88C-203ENST00000389856 ROBO3Q96MS0 1386 aa21.3■■□□□ 1
CCDC88C-203ENST00000389856 CCDC69A6NI79 296 aa21.3■■□□□ 1
CCDC88C-203ENST00000389856 GOLGA8BA8MQT2 603 aa21.3■■□□□ 1
CCDC88C-203ENST00000389856 POLR3DP05423 398 aaPredicted RBP21.3■■□□□ 1
CCDC88C-203ENST00000389856 C12orf60Q5U649 245 aa21.3■■□□□ 1
CCDC88C-203ENST00000389856 TGFBRAP1Q8WUH2 860 aa21.3■■□□□ 1
CCDC88C-203ENST00000389856 PPP1R1BQ9UD71 204 aaPredicted RBP21.3■■□□□ 1
CCDC88C-203ENST00000389856 MKRN1Q9UHC7 482 aaKnown RBP21.3■■□□□ 1
CCDC88C-203ENST00000389856 FOCADQ5VW36 1801 aa21.3■■□□□ 1
CCDC88C-203ENST00000389856 CDK5RAP2Q96SN8 1893 aa21.3■■□□□ 1
CCDC88C-203ENST00000389856 F8W031 263 aaPredicted RBP21.29■■□□□ 1
CCDC88C-203ENST00000389856 STX6O43752 255 aa21.29■■□□□ 1
CCDC88C-203ENST00000389856 CDKL5O76039 1030 aa21.29■■□□□ 1
CCDC88C-203ENST00000389856 RCAN1P53805 252 aa21.29■■□□□ 1
CCDC88C-203ENST00000389856 SCRN1Q12765 414 aa21.29■■□□□ 1
CCDC88C-203ENST00000389856 WTAPQ15007 396 aa21.29■■□□□ 1
CCDC88C-203ENST00000389856 CCDC178Q5BJE1 867 aa21.29■■□□□ 1
CCDC88C-203ENST00000389856 FAM184AQ8NB25 1140 aa21.29■■□□□ 1
CCDC88C-203ENST00000389856 SGIP1Q9BQI5 828 aa21.29■■□□□ 1
CCDC88C-203ENST00000389856 CPLX1O14810 134 aa21.29■■□□□ 1
Retrieved 100 of 20,778 RNA–protein pairs in 18.5 ms