RNA–Protein interactions for RNA: ENST00000374429.6

CXCL12-203, Transcript of C-X-C motif chemokine ligand 12, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene CXCL12, Length 3,532 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CXCL12-203ENST00000374429 TMEM51Q9NW97 253 aa12.5□□□□□ -0.41
CXCL12-203ENST00000374429 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP12.5□□□□□ -0.41
CXCL12-203ENST00000374429 GSG1L2A8MUP6 293 aa12.5□□□□□ -0.41
CXCL12-203ENST00000374429 PATL2C9JE40 543 aaKnown RBP12.5□□□□□ -0.41
CXCL12-203ENST00000374429 FOXN1O15353 648 aa12.5□□□□□ -0.41
CXCL12-203ENST00000374429 PNOCQ13519 176 aa12.5□□□□□ -0.41
CXCL12-203ENST00000374429 ZNF174Q15697 407 aa12.5□□□□□ -0.41
CXCL12-203ENST00000374429 AKNAD1Q5T1N1 836 aa12.5□□□□□ -0.41
CXCL12-203ENST00000374429 IFIT1BQ5T764 474 aaKnown RBP12.5□□□□□ -0.41
CXCL12-203ENST00000374429 FAM200AQ8TCP9 573 aa12.5□□□□□ -0.41
CXCL12-203ENST00000374429 CPLX3Q8WVH0 158 aa12.5□□□□□ -0.41
CXCL12-203ENST00000374429 RPGRQ92834 1020 aaKnown RBP12.5□□□□□ -0.41
CXCL12-203ENST00000374429 HIBADHP31937 336 aaKnown RBP12.49□□□□□ -0.41
CXCL12-203ENST00000374429 TRAPPC3LQ5T215 181 aa12.49□□□□□ -0.41
CXCL12-203ENST00000374429 DIS3L2Q8IYB7 885 aaKnown RBP12.49□□□□□ -0.41
CXCL12-203ENST00000374429 TGFBRAP1Q8WUH2 860 aa12.49□□□□□ -0.41
CXCL12-203ENST00000374429 ZNF622Q969S3 477 aaKnown RBP eCLIP12.49□□□□□ -0.41
CXCL12-203ENST00000374429 NBPF3Q9H094 633 aa12.49□□□□□ -0.41
CXCL12-203ENST00000374429 ZSCAN16Q9H4T2 348 aaPredicted RBP12.49□□□□□ -0.41
CXCL12-203ENST00000374429 SLC3A2P08195 630 aaKnown RBP12.49□□□□□ -0.41
CXCL12-203ENST00000374429 GRIN1Q05586 938 aa12.49□□□□□ -0.41
CXCL12-203ENST00000374429 MYSM1Q5VVJ2 828 aa12.49□□□□□ -0.41
CXCL12-203ENST00000374429 TRMT1LQ7Z2T5 733 aaKnown RBP12.49□□□□□ -0.41
CXCL12-203ENST00000374429 MB21D2Q8IYB1 491 aaPredicted RBP12.49□□□□□ -0.41
CXCL12-203ENST00000374429 TRMT44Q8IYL2 757 aaKnown RBP12.49□□□□□ -0.41
CXCL12-203ENST00000374429 FBXO18Q8NFZ0 1043 aa12.49□□□□□ -0.41
CXCL12-203ENST00000374429 PPP1R9BQ96SB3 815 aa12.49□□□□□ -0.41
CXCL12-203ENST00000374429 MXD3Q9BW11 206 aa12.49□□□□□ -0.41
CXCL12-203ENST00000374429 HPS5Q9UPZ3 1129 aa12.49□□□□□ -0.41
CXCL12-203ENST00000374429 FAM170AA1A519 330 aa12.49□□□□□ -0.41
CXCL12-203ENST00000374429 PPARAQ07869 468 aa12.49□□□□□ -0.41
CXCL12-203ENST00000374429 DOK7Q18PE1 504 aa12.49□□□□□ -0.41
CXCL12-203ENST00000374429 NOM1Q5C9Z4 860 aaKnown RBP12.49□□□□□ -0.41
CXCL12-203ENST00000374429 MRPS27Q92552 414 aaKnown RBP12.49□□□□□ -0.41
CXCL12-203ENST00000374429 GPR108Q9NPR9 543 aa12.49□□□□□ -0.41
CXCL12-203ENST00000374429 MROH5Q6ZUA9 1318 aa12.48□□□□□ -0.41
CXCL12-203ENST00000374429 TPD52L1Q16890 204 aaPredicted RBP12.48□□□□□ -0.41
CXCL12-203ENST00000374429 DPCR1Q3MIW9 517 aa12.48□□□□□ -0.41
CXCL12-203ENST00000374429 GPKOWQ92917 476 aaPredicted RBP eCLIP12.48□□□□□ -0.41
CXCL12-203ENST00000374429 TNKSO95271 1327 aa12.48□□□□□ -0.41
CXCL12-203ENST00000374429 LETM1O95202 739 aaPredicted RBP12.48□□□□□ -0.41
CXCL12-203ENST00000374429 PLEKHA8P1O95397 391 aa12.48□□□□□ -0.41
CXCL12-203ENST00000374429 NTSR2O95665 410 aa12.48□□□□□ -0.41
CXCL12-203ENST00000374429 SERPINC1P01008 464 aa12.48□□□□□ -0.41
CXCL12-203ENST00000374429 SCNN1DP51172 638 aa12.48□□□□□ -0.41
CXCL12-203ENST00000374429 TRIM28Q13263 835 aaKnown RBP12.48□□□□□ -0.41
CXCL12-203ENST00000374429 CNNM3Q8NE01 707 aa12.48□□□□□ -0.41
CXCL12-203ENST00000374429 SCAF8Q9UPN6 1271 aaKnown RBP12.48□□□□□ -0.41
CXCL12-203ENST00000374429 UFL1O94874 794 aa12.48□□□□□ -0.41
CXCL12-203ENST00000374429 SYKP43405 635 aa12.48□□□□□ -0.41
CXCL12-203ENST00000374429 CLEC10AQ8IUN9 316 aa12.48□□□□□ -0.41
CXCL12-203ENST00000374429 CNBD1Q8NA66 436 aa12.48□□□□□ -0.41
CXCL12-203ENST00000374429 FAM84BQ96KN1 310 aaPredicted RBP12.48□□□□□ -0.41
CXCL12-203ENST00000374429 DDX19AQ9NUU7 478 aaKnown RBP12.48□□□□□ -0.41
CXCL12-203ENST00000374429 TACC3Q9Y6A5 838 aa12.48□□□□□ -0.41
CXCL12-203ENST00000374429 ADAMTSL3P82987 1691 aa12.47□□□□□ -0.41
CXCL12-203ENST00000374429 ZNF202O95125 648 aa12.47□□□□□ -0.41
CXCL12-203ENST00000374429 VEGFAP15692 232 aaPredicted RBP12.47□□□□□ -0.41
CXCL12-203ENST00000374429 NOLC1Q14978 699 aaKnown RBP eCLIP12.47□□□□□ -0.41
CXCL12-203ENST00000374429 ANO1Q5XXA6 986 aa12.47□□□□□ -0.41
CXCL12-203ENST00000374429 USP49Q70CQ1 688 aa12.47□□□□□ -0.41
CXCL12-203ENST00000374429 DHX58Q96C10 678 aa12.47□□□□□ -0.41
CXCL12-203ENST00000374429 MARF1Q9Y4F3 1742 aaKnown RBP12.47□□□□□ -0.41
CXCL12-203ENST00000374429 USP17L3A6NCW0 530 aa12.47□□□□□ -0.41
CXCL12-203ENST00000374429 USP17L4A6NCW7 530 aa12.47□□□□□ -0.41
CXCL12-203ENST00000374429 MPHOSPH10O00566 681 aaKnown RBP12.47□□□□□ -0.41
CXCL12-203ENST00000374429 MECOMQ03112 1051 aa12.47□□□□□ -0.41
CXCL12-203ENST00000374429 GRIK5Q16478 980 aa12.47□□□□□ -0.41
CXCL12-203ENST00000374429 USP17L1Q7RTZ2 530 aa12.47□□□□□ -0.41
CXCL12-203ENST00000374429 CLSTN2Q9H4D0 955 aa12.47□□□□□ -0.41
CXCL12-203ENST00000374429 CGNQ9P2M7 1197 aaKnown RBP12.47□□□□□ -0.41
CXCL12-203ENST00000374429 NOL7Q9UMY1 257 aaKnown RBP12.47□□□□□ -0.41
CXCL12-203ENST00000374429 GOLGA6L6A8MZA4 724 aa12.46□□□□□ -0.41
CXCL12-203ENST00000374429 CACNB3P54284 484 aa12.46□□□□□ -0.41
CXCL12-203ENST00000374429 ILDR1Q86SU0 546 aaPredicted RBP12.46□□□□□ -0.41
CXCL12-203ENST00000374429 IQCA1Q86XH1 822 aa12.46□□□□□ -0.41
CXCL12-203ENST00000374429 ZSCAN29Q8IWY8 852 aaPredicted RBP12.46□□□□□ -0.41
CXCL12-203ENST00000374429 ZNF274Q96GC6 653 aaPredicted RBP12.46□□□□□ -0.41
CXCL12-203ENST00000374429 BCL9O00512 1426 aa12.46□□□□□ -0.41
CXCL12-203ENST00000374429 POLR2DO15514 142 aaKnown RBP12.46□□□□□ -0.41
CXCL12-203ENST00000374429 WDHD1O75717 1129 aaPredicted RBP12.46□□□□□ -0.41
CXCL12-203ENST00000374429 MCM7P33993 719 aa12.46□□□□□ -0.41
CXCL12-203ENST00000374429 CFAP100Q494V2 611 aa12.46□□□□□ -0.41
CXCL12-203ENST00000374429 PARP10Q53GL7 1025 aa12.46□□□□□ -0.41
CXCL12-203ENST00000374429 TMC6Q7Z403 805 aa12.46□□□□□ -0.41
CXCL12-203ENST00000374429 SMYD4Q8IYR2 804 aaPredicted RBP12.46□□□□□ -0.41
CXCL12-203ENST00000374429 NOL10Q9BSC4 688 aaKnown RBP12.46□□□□□ -0.41
CXCL12-203ENST00000374429 EIF2AK3Q9NZJ5 1116 aaKnown RBP12.46□□□□□ -0.41
CXCL12-203ENST00000374429 FAM196BA6NMK8 535 aa12.46□□□□□ -0.42
CXCL12-203ENST00000374429 ERVV-1B6SEH8 477 aa12.46□□□□□ -0.42
CXCL12-203ENST00000374429 PFKFB1P16118 471 aa12.46□□□□□ -0.42
CXCL12-203ENST00000374429 NLRP5P59047 1200 aa12.46□□□□□ -0.42
CXCL12-203ENST00000374429 IRX3P78415 501 aaPredicted RBP12.46□□□□□ -0.42
CXCL12-203ENST00000374429 DMTNQ08495 405 aa12.46□□□□□ -0.42
CXCL12-203ENST00000374429 TCP10Q12799 353 aa12.46□□□□□ -0.42
CXCL12-203ENST00000374429 ZNF654Q8IZM8 581 aa12.46□□□□□ -0.42
CXCL12-203ENST00000374429 SMARCC1Q92922 1105 aaPredicted RBP12.46□□□□□ -0.42
CXCL12-203ENST00000374429 IFNKQ9P0W0 207 aa12.46□□□□□ -0.42
CXCL12-203ENST00000374429 ZBTB22O15209 634 aa12.45□□□□□ -0.42
CXCL12-203ENST00000374429 CERS3Q8IU89 383 aa12.45□□□□□ -0.42
Retrieved 100 of 20,778 RNA–protein pairs in 50.3 ms