RNA–Protein interactions for RNA: ENST00000357806.11

CLN3-203, Transcript of CLN3, battenin, humanhuman

TSL 1 (best) BASIC

Gene CLN3, Length 1,469 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-203ENST00000357806 USP2O75604 605 aaPredicted RBP20.58■□□□□ 0.89
CLN3-203ENST00000357806 NPM3O75607 178 aaKnown RBP20.58■□□□□ 0.89
CLN3-203ENST00000357806 PPP4CP60510 307 aa20.58■□□□□ 0.89
CLN3-203ENST00000357806 ANKRD13AQ8IZ07 590 aa20.58■□□□□ 0.89
CLN3-203ENST00000357806 SH3RF3Q8TEJ3 882 aaPredicted RBP20.58■□□□□ 0.89
CLN3-203ENST00000357806 DDX4Q9NQI0 724 aaKnown RBP20.58■□□□□ 0.89
CLN3-203ENST00000357806 ERC2O15083 957 aa20.57■□□□□ 0.88
CLN3-203ENST00000357806 MX1P20591 662 aa20.57■□□□□ 0.88
CLN3-203ENST00000357806 MAP2K1Q02750 393 aaPredicted RBP20.57■□□□□ 0.88
CLN3-203ENST00000357806 SLC9C2Q5TAH2 1124 aa20.57■□□□□ 0.88
CLN3-203ENST00000357806 TSHZ3Q63HK5 1081 aa20.57■□□□□ 0.88
CLN3-203ENST00000357806 ZSCAN29Q8IWY8 852 aaPredicted RBP20.57■□□□□ 0.88
CLN3-203ENST00000357806 DDX24Q9GZR7 859 aaKnown RBP eCLIP20.57■□□□□ 0.882e-6■■■■■ 40.7
CLN3-203ENST00000357806 ATRNL1Q5VV63 1379 aa20.57■□□□□ 0.88
CLN3-203ENST00000357806 BAZ2AQ9UIF9 1905 aaKnown RBP20.57■□□□□ 0.88
CLN3-203ENST00000357806 IGHDP01880 384 aa20.56■□□□□ 0.88
CLN3-203ENST00000357806 PDE6AP16499 860 aa20.56■□□□□ 0.88
CLN3-203ENST00000357806 ZFPM1Q8IX07 1006 aa20.56■□□□□ 0.88
CLN3-203ENST00000357806 CSRNP1Q96S65 589 aa20.56■□□□□ 0.88
CLN3-203ENST00000357806 HSPA1AP0DMV8 641 aaKnown RBP20.56■□□□□ 0.88
CLN3-203ENST00000357806 HSPA1BP0DMV9 641 aaKnown RBP20.56■□□□□ 0.88
CLN3-203ENST00000357806 MIGA1Q8NAN2 632 aa20.56■□□□□ 0.88
CLN3-203ENST00000357806 OTUD7AQ8TE49 926 aaPredicted RBP20.56■□□□□ 0.88
CLN3-203ENST00000357806 SALL3Q9BXA9 1300 aa20.55■□□□□ 0.88
CLN3-203ENST00000357806 GLRX3O76003 335 aaKnown RBP20.55■□□□□ 0.88
CLN3-203ENST00000357806 DDX55Q8NHQ9 600 aaKnown RBP eCLIP20.55■□□□□ 0.88
CLN3-203ENST00000357806 ZNF341Q9BYN7 854 aa20.55■□□□□ 0.88
CLN3-203ENST00000357806 OSBPL5Q9H0X9 879 aaPredicted RBP20.55■□□□□ 0.88
CLN3-203ENST00000357806 ZNF532Q9HCE3 1301 aa20.55■□□□□ 0.88
CLN3-203ENST00000357806 DYNLL1P63167 89 aaKnown RBP20.54■□□□□ 0.88
CLN3-203ENST00000357806 B4GALNT3Q6L9W6 998 aa20.54■□□□□ 0.88
CLN3-203ENST00000357806 ZSCAN25Q6NSZ9 544 aa20.54■□□□□ 0.88
CLN3-203ENST00000357806 MIGA2Q7L4E1 593 aa20.54■□□□□ 0.88
CLN3-203ENST00000357806 PI4K2BQ8TCG2 481 aa20.54■□□□□ 0.88
CLN3-203ENST00000357806 AIDAQ96BJ3 306 aa20.54■□□□□ 0.88
CLN3-203ENST00000357806 SLC10A4Q96EP9 437 aa20.54■□□□□ 0.88
CLN3-203ENST00000357806 CLMNQ96JQ2 1002 aa20.54■□□□□ 0.88
CLN3-203ENST00000357806 WRNIP1Q96S55 665 aa20.54■□□□□ 0.88
CLN3-203ENST00000357806 LNPKQ9C0E8 428 aa20.54■□□□□ 0.88
CLN3-203ENST00000357806 CSADQ9Y600 493 aa20.54■□□□□ 0.88
CLN3-203ENST00000357806 FLT1P17948 1338 aa20.54■□□□□ 0.88
CLN3-203ENST00000357806 PHIPQ8WWQ0 1821 aa20.53■□□□□ 0.88
CLN3-203ENST00000357806 TCRBV5S4A2TA0A5A2 114 aa20.53■□□□□ 0.88
CLN3-203ENST00000357806 DDTLA6NHG4 134 aaPredicted RBP20.53■□□□□ 0.88
CLN3-203ENST00000357806 ADD2P35612 726 aa20.53■□□□□ 0.88
CLN3-203ENST00000357806 MAP3K9P80192 1104 aa20.53■□□□□ 0.88
CLN3-203ENST00000357806 SH3BP5LQ7L8J4 393 aa20.53■□□□□ 0.88
CLN3-203ENST00000357806 TGFBRAP1Q8WUH2 860 aa20.53■□□□□ 0.88
CLN3-203ENST00000357806 BEGAINQ9BUH8 593 aa20.53■□□□□ 0.88
CLN3-203ENST00000357806 WBP1LQ9NX94 342 aa20.53■□□□□ 0.88
CLN3-203ENST00000357806 PTPRFP10586 1907 aa20.53■□□□□ 0.88
CLN3-203ENST00000357806 MAGEB6P1A0A0J9YX57 407 aa20.52■□□□□ 0.88
CLN3-203ENST00000357806 KIF23Q02241 960 aaPredicted RBP20.52■□□□□ 0.88
CLN3-203ENST00000357806 VGLL4Q14135 290 aa20.52■□□□□ 0.88
CLN3-203ENST00000357806 PPP1R3FQ6ZSY5 799 aaPredicted RBP20.52■□□□□ 0.88
CLN3-203ENST00000357806 KBTBD3Q8NAB2 608 aa20.52■□□□□ 0.88
CLN3-203ENST00000357806 ZIC5Q96T25 663 aa20.52■□□□□ 0.88
CLN3-203ENST00000357806 ZBTB4Q9P1Z0 1013 aaPredicted RBP20.52■□□□□ 0.88
CLN3-203ENST00000357806 ZBTB48P10074 688 aaPredicted RBP20.51■□□□□ 0.87
CLN3-203ENST00000357806 NUCB1Q02818 461 aa20.51■□□□□ 0.87
CLN3-203ENST00000357806 CHD1LQ86WJ1 897 aa20.51■□□□□ 0.87
CLN3-203ENST00000357806 MAPKAPK5Q8IW41 473 aa20.51■□□□□ 0.87
CLN3-203ENST00000357806 REM2Q8IYK8 340 aaPredicted RBP20.51■□□□□ 0.87
CLN3-203ENST00000357806 WNK4Q96J92 1243 aa20.51■□□□□ 0.87
CLN3-203ENST00000357806 RIOK1Q9BRS2 568 aaKnown RBP20.51■□□□□ 0.87
CLN3-203ENST00000357806 USP5P45974 858 aa20.5■□□□□ 0.87
CLN3-203ENST00000357806 MKRN3Q13064 507 aaKnown RBP20.5■□□□□ 0.87
CLN3-203ENST00000357806 UBE3CQ15386 1083 aa20.5■□□□□ 0.87
CLN3-203ENST00000357806 SPRYD7Q5W111 196 aa20.5■□□□□ 0.87
CLN3-203ENST00000357806 DHX36Q9H2U1 1008 aaKnown RBP20.5■□□□□ 0.87
CLN3-203ENST00000357806 ELP3Q9H9T3 547 aa20.5■□□□□ 0.87
CLN3-203ENST00000357806 STAP2Q9UGK3 403 aa20.5■□□□□ 0.87
CLN3-203ENST00000357806 PDE1AP54750 535 aa20.5■□□□□ 0.87
CLN3-203ENST00000357806 ZNF112Q9UJU3 913 aa20.5■□□□□ 0.87
CLN3-203ENST00000357806 LRRFIP1Q32MZ4 808 aaKnown RBP20.49■□□□□ 0.87
CLN3-203ENST00000357806 OPTNQ96CV9 577 aa20.49■□□□□ 0.87
CLN3-203ENST00000357806 CRNKL1Q9BZJ0 848 aaKnown RBP20.49■□□□□ 0.87
CLN3-203ENST00000357806 TBC1D12O60347 775 aa20.48■□□□□ 0.87
CLN3-203ENST00000357806 MAP3K10Q02779 954 aa20.48■□□□□ 0.87
CLN3-203ENST00000357806 SREBF2Q12772 1141 aa20.48■□□□□ 0.87
CLN3-203ENST00000357806 ZKSCAN4Q969J2 545 aaPredicted RBP20.48■□□□□ 0.87
CLN3-203ENST00000357806 PI4KBQ9UBF8 816 aa20.48■□□□□ 0.87
CLN3-203ENST00000357806 SNCAIPQ9Y6H5 919 aa20.48■□□□□ 0.87
CLN3-203ENST00000357806 FOXN1O15353 648 aa20.47■□□□□ 0.87
CLN3-203ENST00000357806 CA12O43570 354 aa20.47■□□□□ 0.87
CLN3-203ENST00000357806 ZFYP08048 801 aaPredicted RBP20.47■□□□□ 0.87
CLN3-203ENST00000357806 INPP5BP32019 993 aa20.47■□□□□ 0.87
CLN3-203ENST00000357806 LCORLQ8N3X6 602 aa20.47■□□□□ 0.87
CLN3-203ENST00000357806 HERC5Q9UII4 1024 aaKnown RBP20.47■□□□□ 0.87
CLN3-203ENST00000357806 MANSC4A6NHS7 340 aaPredicted RBP20.46■□□□□ 0.87
CLN3-203ENST00000357806 SPDYE5A6NIY4 337 aa20.46■□□□□ 0.87
CLN3-203ENST00000357806 MBD4O95243 580 aa20.46■□□□□ 0.87
CLN3-203ENST00000357806 HLA-DOAP06340 250 aa20.46■□□□□ 0.87
CLN3-203ENST00000357806 SLFNL1Q499Z3 407 aa20.46■□□□□ 0.87
CLN3-203ENST00000357806 NOL9Q5SY16 702 aaKnown RBP20.46■□□□□ 0.87
CLN3-203ENST00000357806 ERO1BQ86YB8 467 aa20.46■□□□□ 0.87
CLN3-203ENST00000357806 FSD1Q9BTV5 496 aa20.46■□□□□ 0.87
CLN3-203ENST00000357806 XPO5Q9HAV4 1204 aaKnown RBP eCLIP20.46■□□□□ 0.87
CLN3-203ENST00000357806 SAP30BPQ9UHR5 308 aaKnown RBP20.46■□□□□ 0.87
CLN3-203ENST00000357806 PALD1Q9ULE6 856 aa20.46■□□□□ 0.87
Retrieved 100 of 20,778 RNA–protein pairs in 32.8 ms