RNA–Protein interactions for RNA: ENST00000330494.11

CHD3-201, Transcript of chromodomain helicase DNA binding protein 3, humanhuman

APPRIS P4 TSL 1 (best) BASIC

Gene CHD3, Length 7,328 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHD3-201ENST00000330494 RAD50Q92878 1312 aa11.46□□□□□ -0.57
CHD3-201ENST00000330494 GOLGA6L9A6NEM1 432 aa11.46□□□□□ -0.57
CHD3-201ENST00000330494 TRAF5O00463 557 aa11.46□□□□□ -0.57
CHD3-201ENST00000330494 PDE4DQ08499 809 aa11.46□□□□□ -0.57
CHD3-201ENST00000330494 DYMQ7RTS9 669 aa11.46□□□□□ -0.57
CHD3-201ENST00000330494 SGSM2O43147 1006 aa11.46□□□□□ -0.57
CHD3-201ENST00000330494 GIGYF1O75420 1035 aaPredicted RBP11.46□□□□□ -0.57
CHD3-201ENST00000330494 ARHGEF10LQ9HCE6 1279 aa11.46□□□□□ -0.57
CHD3-201ENST00000330494 TMOD4Q9NZQ9 345 aa11.46□□□□□ -0.57
CHD3-201ENST00000330494 ADGRL2O95490 1459 aa11.46□□□□□ -0.57
CHD3-201ENST00000330494 EAPPQ56P03 285 aaPredicted RBP11.46□□□□□ -0.57
CHD3-201ENST00000330494 HS2ST1Q7LGA3 356 aa11.46□□□□□ -0.57
CHD3-201ENST00000330494 IQUBQ8NA54 791 aa11.46□□□□□ -0.57
CHD3-201ENST00000330494 DEXIO95424 95 aa11.46□□□□□ -0.58
CHD3-201ENST00000330494 ACTN2P35609 894 aa11.46□□□□□ -0.58
CHD3-201ENST00000330494 RNASE9P60153 205 aaKnown RBP11.46□□□□□ -0.58
CHD3-201ENST00000330494 PROSER3Q2NL68 480 aa11.46□□□□□ -0.58
CHD3-201ENST00000330494 PPP1R9BQ96SB3 815 aa11.46□□□□□ -0.58
CHD3-201ENST00000330494 ASAP1Q9ULH1 1129 aa11.46□□□□□ -0.58
CHD3-201ENST00000330494 FSD2A1L4K1 749 aa11.46□□□□□ -0.58
CHD3-201ENST00000330494 HSF2BPO75031 334 aa11.46□□□□□ -0.58
CHD3-201ENST00000330494 WDR66Q8TBY9 1149 aa11.46□□□□□ -0.58
CHD3-201ENST00000330494 CHD1O14646 1710 aa11.46□□□□□ -0.58
CHD3-201ENST00000330494 CTAGE9A4FU28 777 aa11.46□□□□□ -0.58
CHD3-201ENST00000330494 ANO1Q5XXA6 986 aa11.46□□□□□ -0.58
CHD3-201ENST00000330494 CCDC42Q96M95 316 aa11.46□□□□□ -0.58
CHD3-201ENST00000330494 CDCA7Q9BWT1 371 aaPredicted RBP11.46□□□□□ -0.58
CHD3-201ENST00000330494 ELP1O95163 1332 aa11.45□□□□□ -0.58
CHD3-201ENST00000330494 A0A1W2PRG0 241 aa11.45□□□□□ -0.58
CHD3-201ENST00000330494 BICDL2A1A5D9 508 aa11.45□□□□□ -0.58
CHD3-201ENST00000330494 PLCB3Q01970 1234 aa11.45□□□□□ -0.58
CHD3-201ENST00000330494 PPARDQ03181 441 aa11.45□□□□□ -0.58
CHD3-201ENST00000330494 OTUD6BQ8N6M0 293 aa11.45□□□□□ -0.58
CHD3-201ENST00000330494 PROCA1Q8NCQ7 364 aaPredicted RBP11.45□□□□□ -0.58
CHD3-201ENST00000330494 PPIP5K2O43314 1243 aa11.45□□□□□ -0.58
CHD3-201ENST00000330494 SYT10Q6XYQ8 523 aa11.45□□□□□ -0.58
CHD3-201ENST00000330494 E7EWF7 191 aa11.45□□□□□ -0.58
CHD3-201ENST00000330494 DYNC1I1O14576 645 aa11.45□□□□□ -0.58
CHD3-201ENST00000330494 RHOXF2BP0C7M4 288 aa11.45□□□□□ -0.58
CHD3-201ENST00000330494 KRT9P35527 623 aa11.45□□□□□ -0.58
CHD3-201ENST00000330494 TFAP4Q01664 338 aa11.45□□□□□ -0.58
CHD3-201ENST00000330494 RHOXF2Q9BQY4 288 aa11.45□□□□□ -0.58
CHD3-201ENST00000330494 SELENOOQ9BVL4 669 aa11.45□□□□□ -0.58
CHD3-201ENST00000330494 METP08581 1390 aa11.45□□□□□ -0.58
CHD3-201ENST00000330494 CAVIN2O95810 425 aa11.45□□□□□ -0.58
CHD3-201ENST00000330494 CCDC175P0C221 793 aa11.45□□□□□ -0.58
CHD3-201ENST00000330494 PTH1RQ03431 593 aa11.45□□□□□ -0.58
CHD3-201ENST00000330494 NCBP1Q09161 790 aaKnown RBP11.45□□□□□ -0.58
CHD3-201ENST00000330494 TCIRG1Q13488 830 aa11.45□□□□□ -0.58
CHD3-201ENST00000330494 LONRF3Q496Y0 759 aa11.45□□□□□ -0.58
CHD3-201ENST00000330494 TMEM87BQ96K49 555 aa11.45□□□□□ -0.58
CHD3-201ENST00000330494 MROH5Q6ZUA9 1318 aa11.45□□□□□ -0.58
CHD3-201ENST00000330494 CFBP00751 764 aa11.45□□□□□ -0.58
CHD3-201ENST00000330494 USP37Q86T82 979 aa11.45□□□□□ -0.58
CHD3-201ENST00000330494 CCDC65Q8IXS2 484 aa11.45□□□□□ -0.58
CHD3-201ENST00000330494 TTF2Q9UNY4 1162 aaKnown RBP11.45□□□□□ -0.58
CHD3-201ENST00000330494 SLC1A4P43007 532 aa11.44□□□□□ -0.58
CHD3-201ENST00000330494 KIF5AQ12840 1032 aa11.44□□□□□ -0.58
CHD3-201ENST00000330494 BLZF1Q9H2G9 400 aa11.44□□□□□ -0.58
CHD3-201ENST00000330494 USP40Q9NVE5 1235 aa11.44□□□□□ -0.58
CHD3-201ENST00000330494 PAXBP1Q9Y5B6 917 aa11.44□□□□□ -0.58
CHD3-201ENST00000330494 A0A0D9SFI3 127 aa11.44□□□□□ -0.58
CHD3-201ENST00000330494 DIS3L2Q8IYB7 885 aaKnown RBP11.44□□□□□ -0.58
CHD3-201ENST00000330494 INTS4Q96HW7 963 aaKnown RBP11.44□□□□□ -0.58
CHD3-201ENST00000330494 ARL1P40616 181 aaPredicted RBP11.44□□□□□ -0.58
CHD3-201ENST00000330494 IFT81Q8WYA0 676 aa11.44□□□□□ -0.58
CHD3-201ENST00000330494 CFAP74Q9C0B2 1584 aa11.44□□□□□ -0.58
CHD3-201ENST00000330494 TCP10L2B9ZVM9 353 aa11.44□□□□□ -0.58
CHD3-201ENST00000330494 TACC1O75410 805 aa11.44□□□□□ -0.58
CHD3-201ENST00000330494 MRPL12P52815 198 aaKnown RBP11.44□□□□□ -0.58
CHD3-201ENST00000330494 CCDC25Q86WR0 208 aa11.44□□□□□ -0.58
CHD3-201ENST00000330494 USP44Q9H0E7 712 aa11.44□□□□□ -0.58
CHD3-201ENST00000330494 IKBKGQ9Y6K9 419 aa11.44□□□□□ -0.58
CHD3-201ENST00000330494 CTAGE15A4D2H0 777 aa11.44□□□□□ -0.58
CHD3-201ENST00000330494 CTAGE8P0CG41 777 aa11.44□□□□□ -0.58
CHD3-201ENST00000330494 BIRC3Q13489 604 aa11.44□□□□□ -0.58
CHD3-201ENST00000330494 CTAGE6Q86UF2 777 aa11.44□□□□□ -0.58
CHD3-201ENST00000330494 CTAGE4Q8IX94 777 aa11.44□□□□□ -0.58
CHD3-201ENST00000330494 NOC4LQ9BVI4 516 aaKnown RBP11.44□□□□□ -0.58
CHD3-201ENST00000330494 BCS1LQ9Y276 419 aa11.44□□□□□ -0.58
CHD3-201ENST00000330494 SPAG1Q07617 926 aa11.44□□□□□ -0.58
CHD3-201ENST00000330494 TTC38Q5R3I4 469 aa11.44□□□□□ -0.58
CHD3-201ENST00000330494 EHBP1Q8NDI1 1231 aa11.44□□□□□ -0.58
CHD3-201ENST00000330494 RBSNQ9H1K0 784 aa11.44□□□□□ -0.58
CHD3-201ENST00000330494 KCNH3Q9ULD8 1083 aa11.44□□□□□ -0.58
CHD3-201ENST00000330494 SAMD9LQ8IVG5 1584 aa11.43□□□□□ -0.58
CHD3-201ENST00000330494 MFSD14BQ5SR56 506 aa11.43□□□□□ -0.58
CHD3-201ENST00000330494 FRMD4BQ9Y2L6 1034 aa11.43□□□□□ -0.58
CHD3-201ENST00000330494 GSPT1P15170 499 aaKnown RBP11.43□□□□□ -0.58
CHD3-201ENST00000330494 ADORA1P30542 326 aa11.43□□□□□ -0.58
CHD3-201ENST00000330494 DNAJC21Q5F1R6 531 aaKnown RBP11.43□□□□□ -0.58
CHD3-201ENST00000330494 PPP1R14CQ8TAE6 165 aa11.43□□□□□ -0.58
CHD3-201ENST00000330494 GREM2Q9H772 168 aa11.43□□□□□ -0.58
CHD3-201ENST00000330494 TRIM37O94972 964 aa11.43□□□□□ -0.58
CHD3-201ENST00000330494 KIAA0825Q8IV33 1275 aa11.43□□□□□ -0.58
CHD3-201ENST00000330494 ERVV-2B6SEH9 535 aa11.43□□□□□ -0.58
CHD3-201ENST00000330494 USP17L12C9JPN9 530 aa11.43□□□□□ -0.58
CHD3-201ENST00000330494 USP17L21D6R901 530 aa11.43□□□□□ -0.58
CHD3-201ENST00000330494 PUS3Q9BZE2 481 aaKnown RBP11.43□□□□□ -0.58
CHD3-201ENST00000330494 CKAP4Q07065 602 aaKnown RBP11.43□□□□□ -0.58
Retrieved 100 of 20,778 RNA–protein pairs in 428 ms