RNA–Protein interactions for RNA: ENST00000254351.8

SDC1-201, Transcript of syndecan 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SDC1, Length 3,147 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1-201ENST00000254351 NKX2-3Q8TAU0 364 aa16.42■□□□□ 0.22
SDC1-201ENST00000254351 STAMQ92783 540 aa16.42■□□□□ 0.22
SDC1-201ENST00000254351 KCNH3Q9ULD8 1083 aa16.42■□□□□ 0.22
SDC1-201ENST00000254351 LRRIQ3A6PVS8 624 aaPredicted RBP16.41■□□□□ 0.22
SDC1-201ENST00000254351 POLR2DO15514 142 aaKnown RBP16.41■□□□□ 0.22
SDC1-201ENST00000254351 APPP05067 770 aa16.41■□□□□ 0.22
SDC1-201ENST00000254351 ATF3P18847 181 aa16.41■□□□□ 0.22
SDC1-201ENST00000254351 ESCO1Q5FWF5 840 aa16.41■□□□□ 0.22
SDC1-201ENST00000254351 PI16Q6UXB8 463 aa16.41■□□□□ 0.22
SDC1-201ENST00000254351 PPP1R3FQ6ZSY5 799 aaPredicted RBP16.41■□□□□ 0.22
SDC1-201ENST00000254351 CAPZA3Q96KX2 299 aa16.41■□□□□ 0.22
SDC1-201ENST00000254351 SENP2Q9HC62 589 aa16.41■□□□□ 0.22
SDC1-201ENST00000254351 MAST3O60307 1309 aa16.41■□□□□ 0.22
SDC1-201ENST00000254351 C1orf167Q5SNV9 1468 aa16.41■□□□□ 0.22
SDC1-201ENST00000254351 YEATS4O95619 227 aa16.41■□□□□ 0.22
SDC1-201ENST00000254351 CDC25AP30304 524 aa16.41■□□□□ 0.22
SDC1-201ENST00000254351 AFMP43652 599 aa16.41■□□□□ 0.22
SDC1-201ENST00000254351 RBL2Q08999 1139 aa16.41■□□□□ 0.22
SDC1-201ENST00000254351 RALYLQ86SE5 291 aaKnown RBP16.41■□□□□ 0.22
SDC1-201ENST00000254351 OSBP2Q969R2 916 aa16.41■□□□□ 0.22
SDC1-201ENST00000254351 HAUS7Q99871 368 aa16.41■□□□□ 0.22
SDC1-201ENST00000254351 TEX13AQ9BXU3 409 aaPredicted RBP16.41■□□□□ 0.22
SDC1-201ENST00000254351 XIRP1Q702N8 1843 aaKnown RBP16.41■□□□□ 0.22
SDC1-201ENST00000254351 ATP8B1O43520 1251 aa16.41■□□□□ 0.22
SDC1-201ENST00000254351 CCT6AP40227 531 aaKnown RBP16.41■□□□□ 0.22
SDC1-201ENST00000254351 LIG3P49916 1009 aa16.41■□□□□ 0.22
SDC1-201ENST00000254351 LRRC31Q6UY01 552 aa16.41■□□□□ 0.22
SDC1-201ENST00000254351 TUBB4AP04350 444 aa16.4■□□□□ 0.22
SDC1-201ENST00000254351 HDAC5Q9UQL6 1122 aa16.4■□□□□ 0.22
SDC1-201ENST00000254351 ZNF330Q9Y3S2 320 aaPredicted RBP16.4■□□□□ 0.22
SDC1-201ENST00000254351 MST1RQ04912 1400 aa16.4■□□□□ 0.22
SDC1-201ENST00000254351 PES1O00541 588 aaKnown RBP16.4■□□□□ 0.22
SDC1-201ENST00000254351 IFIT1P09914 478 aaKnown RBP16.4■□□□□ 0.22
SDC1-201ENST00000254351 KCNJ6P48051 423 aa16.4■□□□□ 0.22
SDC1-201ENST00000254351 SLC39A14Q15043 492 aa16.4■□□□□ 0.22
SDC1-201ENST00000254351 ATL3Q6DD88 541 aa16.4■□□□□ 0.22
SDC1-201ENST00000254351 CADPS2Q86UW7 1296 aa16.4■□□□□ 0.22
SDC1-201ENST00000254351 GPIHBP1Q8IV16 184 aa16.4■□□□□ 0.22
SDC1-201ENST00000254351 ZNF274Q96GC6 653 aaPredicted RBP16.4■□□□□ 0.22
SDC1-201ENST00000254351 EHD4Q9H223 541 aa16.4■□□□□ 0.22
SDC1-201ENST00000254351 TRIM10Q9UDY6 481 aa16.4■□□□□ 0.22
SDC1-201ENST00000254351 MAP2K7O14733 419 aa16.39■□□□□ 0.21
SDC1-201ENST00000254351 STX10O60499 249 aa16.39■□□□□ 0.21
SDC1-201ENST00000254351 EIF3JO75822 258 aaKnown RBP16.39■□□□□ 0.21
SDC1-201ENST00000254351 DHX8Q14562 1220 aaKnown RBP16.39■□□□□ 0.21
SDC1-201ENST00000254351 PPFIBP1Q86W92 1011 aa16.39■□□□□ 0.21
SDC1-201ENST00000254351 GNL3Q9BVP2 549 aaKnown RBP eCLIP16.39■□□□□ 0.21
SDC1-201ENST00000254351 HDAC6Q9UBN7 1215 aa16.39■□□□□ 0.21
SDC1-201ENST00000254351 RNMTO43148 476 aaKnown RBP16.39■□□□□ 0.21
SDC1-201ENST00000254351 SRGAP2O75044 1071 aa16.39■□□□□ 0.21
SDC1-201ENST00000254351 KRT40Q6A162 431 aa16.39■□□□□ 0.21
SDC1-201ENST00000254351 IGSF22Q8N9C0 903 aa16.39■□□□□ 0.21
SDC1-201ENST00000254351 SEC31BQ9NQW1 1179 aa16.39■□□□□ 0.21
SDC1-201ENST00000254351 SERTAD1Q9UHV2 236 aa16.39■□□□□ 0.21
SDC1-201ENST00000254351 HPS5Q9UPZ3 1129 aa16.39■□□□□ 0.21
SDC1-201ENST00000254351 ERLIN1O75477 346 aa16.39■□□□□ 0.21
SDC1-201ENST00000254351 LRRC24Q50LG9 513 aa16.39■□□□□ 0.21
SDC1-201ENST00000254351 SLC9C2Q5TAH2 1124 aa16.39■□□□□ 0.21
SDC1-201ENST00000254351 USP49Q70CQ1 688 aa16.39■□□□□ 0.21
SDC1-201ENST00000254351 A1BGP04217 495 aa16.38■□□□□ 0.21
SDC1-201ENST00000254351 IVLP07476 585 aa16.38■□□□□ 0.21
SDC1-201ENST00000254351 CASP14P31944 242 aa16.38■□□□□ 0.21
SDC1-201ENST00000254351 BRD3Q15059 726 aa16.38■□□□□ 0.21
SDC1-201ENST00000254351 NFXL1Q6ZNB6 911 aa16.38■□□□□ 0.21
SDC1-201ENST00000254351 ORAI2Q96SN7 254 aa16.38■□□□□ 0.21
SDC1-201ENST00000254351 KCNJ14Q9UNX9 436 aa16.38■□□□□ 0.21
SDC1-201ENST00000254351 AKR1B15C9JRZ8 316 aaPredicted RBP16.38■□□□□ 0.21
SDC1-201ENST00000254351 RNF40O75150 1001 aa16.38■□□□□ 0.21
SDC1-201ENST00000254351 FGAP02671 866 aa16.38■□□□□ 0.21
SDC1-201ENST00000254351 MAN1B1Q9UKM7 699 aa16.38■□□□□ 0.21
SDC1-201ENST00000254351 L1RE1Q9UN81 338 aa16.38■□□□□ 0.21
SDC1-201ENST00000254351 PLEKHG2Q9H7P9 1386 aa16.37■□□□□ 0.21
SDC1-201ENST00000254351 TUBE1Q9UJT0 475 aa16.37■□□□□ 0.21
SDC1-201ENST00000254351 CDC23Q9UJX2 597 aa16.37■□□□□ 0.21
SDC1-201ENST00000254351 GUCA1BQ9UMX6 200 aa16.37■□□□□ 0.21
SDC1-201ENST00000254351 KIF1AQ12756 1690 aa16.37■□□□□ 0.21
SDC1-201ENST00000254351 CTAGE9A4FU28 777 aa16.37■□□□□ 0.21
SDC1-201ENST00000254351 MAGEA9P43362 315 aa16.37■□□□□ 0.21
SDC1-201ENST00000254351 ANKRD13DQ6ZTN6 518 aa16.37■□□□□ 0.21
SDC1-201ENST00000254351 SLF1Q9BQI6 1058 aa16.37■□□□□ 0.21
SDC1-201ENST00000254351 DEF6Q9H4E7 631 aa16.37■□□□□ 0.21
SDC1-201ENST00000254351 CTAGE15A4D2H0 777 aa16.36■□□□□ 0.21
SDC1-201ENST00000254351 CTAGE8P0CG41 777 aa16.36■□□□□ 0.21
SDC1-201ENST00000254351 IMMTQ16891 758 aaKnown RBP16.36■□□□□ 0.21
SDC1-201ENST00000254351 CTAGE6Q86UF2 777 aa16.36■□□□□ 0.21
SDC1-201ENST00000254351 CTAGE4Q8IX94 777 aa16.36■□□□□ 0.21
SDC1-201ENST00000254351 DDX21Q9NR30 783 aaKnown RBP eCLIP16.36■□□□□ 0.21
SDC1-201ENST00000254351 ADGRG1Q9Y653 693 aa16.36■□□□□ 0.21
SDC1-201ENST00000254351 PLEKHO1Q53GL0 409 aaPredicted RBP16.36■□□□□ 0.21
SDC1-201ENST00000254351 EP400NLQ6ZTU2 488 aa16.36■□□□□ 0.21
SDC1-201ENST00000254351 BRAPQ7Z569 592 aa16.36■□□□□ 0.21
SDC1-201ENST00000254351 EEF2KMTQ96G04 330 aa16.36■□□□□ 0.21
SDC1-201ENST00000254351 PUS3Q9BZE2 481 aaKnown RBP16.36■□□□□ 0.21
SDC1-201ENST00000254351 HOOK1Q9UJC3 728 aaKnown RBP16.36■□□□□ 0.21
SDC1-201ENST00000254351 TRDNQ13061 729 aa16.36■□□□□ 0.21
SDC1-201ENST00000254351 PDIA6Q15084 440 aa16.36■□□□□ 0.21
SDC1-201ENST00000254351 TTC39AQ5SRH9 613 aa16.36■□□□□ 0.21
SDC1-201ENST00000254351 MED15Q96RN5 788 aa16.36■□□□□ 0.21
SDC1-201ENST00000254351 MAPK8IP1Q9UQF2 711 aa16.36■□□□□ 0.21
SDC1-201ENST00000254351 GOLGA6L9A6NEM1 432 aa16.35■□□□□ 0.21
Retrieved 100 of 20,778 RNA–protein pairs in 66.6 ms