RNA–Protein interactions for RNA: ENSMUST00000076265.12

Upf3b-201, Transcript of UPF3 regulator of nonsense transcripts homolog B (yeast), mousemouse

APPRIS P1 TSL 1 (best) BASIC

Gene Upf3b, Length 2,344 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (Experimental data)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
Upf3b-201ENSMUST00000076265 Kctd5Q8VC57 234 aa10.52□□□□□ -0.72
Upf3b-201ENSMUST00000076265 Snx5Q9D8U8 404 aa10.52□□□□□ -0.72
Upf3b-201ENSMUST00000076265 Clstn2Q9ER65 966 aa10.52□□□□□ -0.72
Upf3b-201ENSMUST00000076265 Letm1Q9Z2I0 738 aa10.52□□□□□ -0.72
Upf3b-201ENSMUST00000076265 Nup155Q99P88 1391 aaKnown RBP10.52□□□□□ -0.73
Upf3b-201ENSMUST00000076265 Scaf11E9PZM7 1456 aaKnown RBP10.52□□□□□ -0.73
Upf3b-201ENSMUST00000076265 Pdzrn4E9PUZ9 1014 aa10.52□□□□□ -0.73
Upf3b-201ENSMUST00000076265 Atp8a2P98200 1148 aa10.52□□□□□ -0.73
Upf3b-201ENSMUST00000076265 Nxf2Q4ZGD8 691 aa10.52□□□□□ -0.73
Upf3b-201ENSMUST00000076265 Ndufaf2Q59J78 168 aa10.52□□□□□ -0.73
Upf3b-201ENSMUST00000076265 Cyp2c29Q64458 490 aa10.52□□□□□ -0.73
Upf3b-201ENSMUST00000076265 KhnynQ80U38 671 aa10.52□□□□□ -0.73
Upf3b-201ENSMUST00000076265 Pus7lQ8CE46 702 aa10.52□□□□□ -0.73
Upf3b-201ENSMUST00000076265 Sugp1Q8CH02 643 aaKnown RBP10.52□□□□□ -0.73
Upf3b-201ENSMUST00000076265 ZgpatQ8VDM1 511 aa10.52□□□□□ -0.73
Upf3b-201ENSMUST00000076265 Ginm1Q91WR6 327 aa10.52□□□□□ -0.73
Upf3b-201ENSMUST00000076265 AdarQ99MU3 1178 aaKnown RBP10.52□□□□□ -0.73
Upf3b-201ENSMUST00000076265 Trim11Q99PQ2 467 aa10.52□□□□□ -0.73
Upf3b-201ENSMUST00000076265 Irx5Q9JKQ4 484 aa10.52□□□□□ -0.73
Upf3b-201ENSMUST00000076265 PolkQ9QUG2 852 aa10.52□□□□□ -0.73
Upf3b-201ENSMUST00000076265 Arih2Q9Z1K6 492 aa10.52□□□□□ -0.73
Upf3b-201ENSMUST00000076265 Dpp6Q9Z218 804 aa10.52□□□□□ -0.73
Upf3b-201ENSMUST00000076265 Rimbp3Q3V0F0 1606 aa10.52□□□□□ -0.73
Upf3b-201ENSMUST00000076265 Smpd5D6MZJ6 483 aa10.51□□□□□ -0.73
Upf3b-201ENSMUST00000076265 Exosc10P56960 887 aaKnown RBP10.51□□□□□ -0.73
Upf3b-201ENSMUST00000076265 Crtc1Q68ED7 630 aa10.51□□□□□ -0.73
Upf3b-201ENSMUST00000076265 Mark1Q8VHJ5 795 aa10.51□□□□□ -0.73
Upf3b-201ENSMUST00000076265 AlkP97793 1621 aa10.51□□□□□ -0.73
Upf3b-201ENSMUST00000076265 Jakmip2D3YXK0 820 aa10.51□□□□□ -0.73
Upf3b-201ENSMUST00000076265 Pabpc4lG5E8X2 370 aa10.51□□□□□ -0.73
Upf3b-201ENSMUST00000076265 ChkaO54804 453 aa10.51□□□□□ -0.73
Upf3b-201ENSMUST00000076265 Col9a2Q07643 688 aa10.51□□□□□ -0.73
Upf3b-201ENSMUST00000076265 Ncf1Q09014 390 aa10.51□□□□□ -0.73
Upf3b-201ENSMUST00000076265 Smyd5Q3TYX3 416 aa10.51□□□□□ -0.73
Upf3b-201ENSMUST00000076265 WaplQ65Z40 1200 aaKnown RBP10.51□□□□□ -0.73
Upf3b-201ENSMUST00000076265 Tsr2Q8C8T8 191 aa10.51□□□□□ -0.73
Upf3b-201ENSMUST00000076265 NifkQ91VE6 317 aaKnown RBP10.51□□□□□ -0.73
Upf3b-201ENSMUST00000076265 Clp1Q99LI9 425 aa10.51□□□□□ -0.73
Upf3b-201ENSMUST00000076265 Gtpbp4Q99ME9 634 aaKnown RBP10.51□□□□□ -0.73
Upf3b-201ENSMUST00000076265 Snx2Q9CWK8 519 aa10.51□□□□□ -0.73
Upf3b-201ENSMUST00000076265 Tbc1d7Q9D0K0 293 aa10.51□□□□□ -0.73
Upf3b-201ENSMUST00000076265 Fam50bQ9WTJ8 334 aa10.51□□□□□ -0.73
Upf3b-201ENSMUST00000076265 Fhad1A6PWD2 1420 aa10.51□□□□□ -0.73
Upf3b-201ENSMUST00000076265 Cyp17a1P27786 507 aa10.5□□□□□ -0.73
Upf3b-201ENSMUST00000076265 Lrch1P62046 709 aa10.5□□□□□ -0.73
Upf3b-201ENSMUST00000076265 TbataQ7TSD4 393 aa10.5□□□□□ -0.73
Upf3b-201ENSMUST00000076265 Tcp10aQ80W76 438 aa10.5□□□□□ -0.73
Upf3b-201ENSMUST00000076265 Rab11fip4Q8BQP8 635 aa10.5□□□□□ -0.73
Upf3b-201ENSMUST00000076265 Adgrf1Q8VEC3 908 aa10.5□□□□□ -0.73
Upf3b-201ENSMUST00000076265 Rnf123Q5XPI3 1314 aa10.5□□□□□ -0.73
Upf3b-201ENSMUST00000076265 Chd2E9PZM4 1827 aaKnown RBP10.5□□□□□ -0.73
Upf3b-201ENSMUST00000076265 Wdr78E9PYY5 807 aa10.5□□□□□ -0.73
Upf3b-201ENSMUST00000076265 Cplx1P63040 134 aa10.5□□□□□ -0.73
Upf3b-201ENSMUST00000076265 Rac2Q05144 192 aa10.5□□□□□ -0.73
Upf3b-201ENSMUST00000076265 Fgfr1opQ66JX5 399 aa10.5□□□□□ -0.73
Upf3b-201ENSMUST00000076265 Kiaa0753Q6A000 959 aa10.5□□□□□ -0.73
Upf3b-201ENSMUST00000076265 Fchsd1Q6PFY1 688 aa10.5□□□□□ -0.73
Upf3b-201ENSMUST00000076265 Smc4Q8CG47 1286 aa10.5□□□□□ -0.73
Upf3b-201ENSMUST00000076265 Tcam1Q99NB3 548 aa10.5□□□□□ -0.73
Upf3b-201ENSMUST00000076265 Zmat2Q9CPW7 199 aa10.5□□□□□ -0.73
Upf3b-201ENSMUST00000076265 Fip1l1Q9D824 581 aaKnown RBP10.5□□□□□ -0.73
Upf3b-201ENSMUST00000076265 Dydc1Q9D9T0 175 aa10.5□□□□□ -0.73
Upf3b-201ENSMUST00000076265 Clcn2Q9R0A1 908 aa10.5□□□□□ -0.73
Upf3b-201ENSMUST00000076265 Pmm2Q9Z2M7 242 aa10.5□□□□□ -0.73
Upf3b-201ENSMUST00000076265 Setdb1O88974 1307 aa10.5□□□□□ -0.73
Upf3b-201ENSMUST00000076265 Smarce1O54941 411 aaKnown RBP10.49□□□□□ -0.73
Upf3b-201ENSMUST00000076265 Usp48Q3V0C5 1052 aa10.49□□□□□ -0.73
Upf3b-201ENSMUST00000076265 Ctr9Q62018 1173 aaKnown RBP10.49□□□□□ -0.73
Upf3b-201ENSMUST00000076265 Znf219Q6IQX8 726 aa10.49□□□□□ -0.73
Upf3b-201ENSMUST00000076265 BC061237Q6P8I2 184 aa10.49□□□□□ -0.73
Upf3b-201ENSMUST00000076265 Fbxo10Q7TQF2 950 aa10.49□□□□□ -0.73
Upf3b-201ENSMUST00000076265 Mphosph10Q810V0 681 aaKnown RBP10.49□□□□□ -0.73
Upf3b-201ENSMUST00000076265 Sirt5Q8K2C6 310 aa10.49□□□□□ -0.73
Upf3b-201ENSMUST00000076265 Kif2cQ922S8 721 aa10.49□□□□□ -0.73
Upf3b-201ENSMUST00000076265 Ppp2r2dQ925E7 453 aa10.49□□□□□ -0.73
Upf3b-201ENSMUST00000076265 Q9DAR0 182 aa10.49□□□□□ -0.73
Upf3b-201ENSMUST00000076265 Ylpm1Q9R0I7 1386 aaKnown RBP10.49□□□□□ -0.73
Upf3b-201ENSMUST00000076265 Gm8267E9Q207 261 aa10.49□□□□□ -0.73
Upf3b-201ENSMUST00000076265 Hsd3b6O35469 373 aa10.49□□□□□ -0.73
Upf3b-201ENSMUST00000076265 ChkbO55229 394 aa10.49□□□□□ -0.73
Upf3b-201ENSMUST00000076265 Ap1g2O88512 791 aa10.49□□□□□ -0.73
Upf3b-201ENSMUST00000076265 Epb41l4aP52963 686 aa10.49□□□□□ -0.73
Upf3b-201ENSMUST00000076265 Aldh16a1Q571I9 802 aa10.49□□□□□ -0.73
Upf3b-201ENSMUST00000076265 Il23rQ8K4B4 644 aa10.49□□□□□ -0.73
Upf3b-201ENSMUST00000076265 Herpud2Q9JJC9 404 aa10.49□□□□□ -0.73
Upf3b-201ENSMUST00000076265 Dnajc7Q9QYI3 494 aa10.49□□□□□ -0.73
Upf3b-201ENSMUST00000076265 Tmem131lQ3U3D7 1597 aa10.48□□□□□ -0.73
Upf3b-201ENSMUST00000076265 AnkarA2RT91 1465 aa10.48□□□□□ -0.73
Upf3b-201ENSMUST00000076265 Fam186bD3Z420 943 aa10.48□□□□□ -0.73
Upf3b-201ENSMUST00000076265 Mex3cQ05A36 652 aaKnown RBP10.48□□□□□ -0.73
Upf3b-201ENSMUST00000076265 Sycp1Q62209 993 aa10.48□□□□□ -0.73
Upf3b-201ENSMUST00000076265 Sh3d21Q7TSG5 549 aa10.48□□□□□ -0.73
Upf3b-201ENSMUST00000076265 Tmem221Q8K071 230 aa10.48□□□□□ -0.73
Upf3b-201ENSMUST00000076265 Aldh1l1Q8R0Y6 902 aa10.48□□□□□ -0.73
Upf3b-201ENSMUST00000076265 Scrn2Q8VCA8 425 aa10.48□□□□□ -0.73
Upf3b-201ENSMUST00000076265 NgrnQ99KS2 293 aaKnown RBP10.48□□□□□ -0.73
Upf3b-201ENSMUST00000076265 Ror1Q9Z139 937 aa10.48□□□□□ -0.73
Upf3b-201ENSMUST00000076265 Phlpp1Q8CHE4 1687 aa10.48□□□□□ -0.73
Upf3b-201ENSMUST00000076265 Akap12Q9WTQ5 1684 aa10.48□□□□□ -0.73
Upf3b-201ENSMUST00000076265 Asxl1P59598 1514 aa10.48□□□□□ -0.73
Retrieved 100 of 22,080 RNA–protein pairs in 132.9 ms