RNA–Protein interactions for RNA: ENST00000637107.1

CLN3-256, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,946 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-256ENST00000637107 PRSS29PA6NIE9 313 aa12.43□□□□□ -0.42
CLN3-256ENST00000637107 IGIPA6NJ69 53 aa12.43□□□□□ -0.42
CLN3-256ENST00000637107 GIG44P09565 113 aaPredicted RBP12.43□□□□□ -0.42
CLN3-256ENST00000637107 KIR2DL5BQ8NHK3 375 aa12.43□□□□□ -0.42
CLN3-256ENST00000637107 ORAOV1Q8WV07 137 aa12.43□□□□□ -0.42
CLN3-256ENST00000637107 TTTY13Q9BZ97 58 aa12.43□□□□□ -0.42
CLN3-256ENST00000637107 EDA2RQ9HAV5 297 aa12.43□□□□□ -0.42
CLN3-256ENST00000637107 A8MWV9 139 aa12.42□□□□□ -0.42
CLN3-256ENST00000637107 TSHBP01222 138 aa12.42□□□□□ -0.42
CLN3-256ENST00000637107 RPL39P62891 51 aaKnown RBP12.42□□□□□ -0.42
CLN3-256ENST00000637107 UFSP1Q6NVU6 142 aa12.42□□□□□ -0.42
CLN3-256ENST00000637107 TM2D3Q9BRN9 247 aa12.42□□□□□ -0.42
CLN3-256ENST00000637107 RETNQ9HD89 108 aa12.42□□□□□ -0.42
CLN3-256ENST00000637107 XCL2Q9UBD3 114 aa12.42□□□□□ -0.42
CLN3-256ENST00000637107 TENM3Q9P273 2699 aa12.42□□□□□ -0.42
CLN3-256ENST00000637107 IGHV3-73A0A0B4J1V6 119 aa12.41□□□□□ -0.42
CLN3-256ENST00000637107 RHOHQ15669 191 aa12.41□□□□□ -0.42
CLN3-256ENST00000637107 SPXQ9BT56 116 aa12.41□□□□□ -0.42
CLN3-256ENST00000637107 TAX1BP3O14907 124 aa12.41□□□□□ -0.42
CLN3-256ENST00000637107 HSD52Q0P140 79 aa12.41□□□□□ -0.42
CLN3-256ENST00000637107 DEFB135Q30KP9 77 aa12.41□□□□□ -0.42
CLN3-256ENST00000637107 TMEM141Q96I45 108 aa12.41□□□□□ -0.42
CLN3-256ENST00000637107 C1orf158Q8N1D5 194 aa12.4□□□□□ -0.42
CLN3-256ENST00000637107 TIMM17AQ99595 171 aa12.4□□□□□ -0.42
CLN3-256ENST00000637107 I3L3M4 83 aa12.39□□□□□ -0.43
CLN3-256ENST00000637107 HIGD1BQ9P298 99 aa12.39□□□□□ -0.43
CLN3-256ENST00000637107 SEC11AP67812 179 aa12.39□□□□□ -0.43
CLN3-256ENST00000637107 CFAP126Q5VTH2 177 aa12.39□□□□□ -0.43
CLN3-256ENST00000637107 NPSP0C0P6 89 aa12.38□□□□□ -0.43
CLN3-256ENST00000637107 P0DMU3 169 aa12.38□□□□□ -0.43
CLN3-256ENST00000637107 FAM231AP0DMU4 169 aa12.38□□□□□ -0.43
CLN3-256ENST00000637107 FAM231CP0DMU5 169 aa12.38□□□□□ -0.43
CLN3-256ENST00000637107 AZU1P20160 251 aa12.38□□□□□ -0.43
CLN3-256ENST00000637107 MAPKAPK5-AS1Q8N8E1 139 aa12.38□□□□□ -0.43
CLN3-256ENST00000637107 MRPL16Q9NX20 251 aaKnown RBP12.38□□□□□ -0.43
CLN3-256ENST00000637107 PMVKQ15126 192 aa12.37□□□□□ -0.43
CLN3-256ENST00000637107 SPATA25Q9BR10 227 aa12.37□□□□□ -0.43
CLN3-256ENST00000637107 OVOL2Q9BRP0 275 aa12.37□□□□□ -0.43
CLN3-256ENST00000637107 NHLRC4P0CG21 123 aaPredicted RBP12.37□□□□□ -0.43
CLN3-256ENST00000637107 CSNK1G2-AS1Q8NCQ2 148 aa12.37□□□□□ -0.43
CLN3-256ENST00000637107 TRBV25-1A0A075B6N4 114 aa12.36□□□□□ -0.43
CLN3-256ENST00000637107 TRAV8-6A0A0B4J262 113 aa12.36□□□□□ -0.43
CLN3-256ENST00000637107 RS1O15537 224 aa12.36□□□□□ -0.43
CLN3-256ENST00000637107 Q6ZSN1 163 aa12.36□□□□□ -0.43
CLN3-256ENST00000637107 CST9LQ9H4G1 147 aa12.36□□□□□ -0.43
CLN3-256ENST00000637107 IGLV4-69A0A075B6H9 119 aa12.35□□□□□ -0.43
CLN3-256ENST00000637107 IGHV3OR16-12A0A075B7B8 117 aa12.35□□□□□ -0.43
CLN3-256ENST00000637107 RHODO00212 210 aa12.35□□□□□ -0.43
CLN3-256ENST00000637107 C20orf203Q8NBC4 194 aa12.35□□□□□ -0.43
CLN3-256ENST00000637107 RNF183Q96D59 192 aa12.35□□□□□ -0.43
CLN3-256ENST00000637107 IL17DQ8TAD2 202 aa12.35□□□□□ -0.43
CLN3-256ENST00000637107 CHAC1Q9BUX1 264 aa12.35□□□□□ -0.43
CLN3-256ENST00000637107 TNFRSF18Q9Y5U5 241 aa12.35□□□□□ -0.43
CLN3-256ENST00000637107 C1QTNF4Q9BXJ3 329 aa12.34□□□□□ -0.43
CLN3-256ENST00000637107 A6NDN8 102 aa12.33□□□□□ -0.44
CLN3-256ENST00000637107 C11orf86A6NJI1 115 aa12.33□□□□□ -0.44
CLN3-256ENST00000637107 E9PLD3 99 aa12.33□□□□□ -0.44
CLN3-256ENST00000637107 PAPPA-AS1Q5QFB9 102 aa12.33□□□□□ -0.44
CLN3-256ENST00000637107 OR11H2Q8NH07 326 aa12.33□□□□□ -0.44
CLN3-256ENST00000637107 NACAE9PAV3 2078 aa12.33□□□□□ -0.44
CLN3-256ENST00000637107 IGHV3-53P01767 116 aa12.33□□□□□ -0.44
CLN3-256ENST00000637107 OPRPNQ99935 248 aaPredicted RBP12.32□□□□□ -0.44
CLN3-256ENST00000637107 Q9UF83 564 aa12.32□□□□□ -0.44
CLN3-256ENST00000637107 EMP1P54849 157 aa12.31□□□□□ -0.44
CLN3-256ENST00000637107 RNASE8Q8TDE3 154 aaKnown RBP12.31□□□□□ -0.44
CLN3-256ENST00000637107 STAB2Q8WWQ8 2551 aa12.31□□□□□ -0.44
CLN3-256ENST00000637107 UBE2V1Q13404 147 aa12.31□□□□□ -0.44
CLN3-256ENST00000637107 DNAJC30Q96LL9 226 aa12.31□□□□□ -0.44
CLN3-256ENST00000637107 PRADC1Q9BSG0 188 aa12.31□□□□□ -0.44
CLN3-256ENST00000637107 MYMXA0A1B0GTQ4 84 aa12.3□□□□□ -0.44
CLN3-256ENST00000637107 H3BRM9 83 aa12.3□□□□□ -0.44
CLN3-256ENST00000637107 GCSHP23434 173 aa12.29□□□□□ -0.44
CLN3-256ENST00000637107 VAMP3Q15836 100 aa12.29□□□□□ -0.44
CLN3-256ENST00000637107 TRGV1A0A0A0MS02 117 aa12.29□□□□□ -0.44
CLN3-256ENST00000637107 CCL25O15444 150 aa12.29□□□□□ -0.44
CLN3-256ENST00000637107 PTTG1IPP53801 180 aa12.29□□□□□ -0.44
CLN3-256ENST00000637107 TMEM263Q8WUH6 116 aaKnown RBP12.29□□□□□ -0.44
CLN3-256ENST00000637107 X6R8D5 127 aa12.29□□□□□ -0.44
CLN3-256ENST00000637107 IGLV4-3A0A075B6K6 122 aa12.28□□□□□ -0.44
CLN3-256ENST00000637107 ZNRF2Q8NHG8 242 aa12.28□□□□□ -0.44
CLN3-256ENST00000637107 FXYD2P54710 66 aa12.27□□□□□ -0.44
CLN3-256ENST00000637107 HERVK_113P61574 105 aa12.27□□□□□ -0.44
CLN3-256ENST00000637107 TAL2Q16559 108 aa12.27□□□□□ -0.44
CLN3-256ENST00000637107 OR4C5Q8NGB2 326 aa12.27□□□□□ -0.44
CLN3-256ENST00000637107 PYGO1Q9Y3Y4 419 aa12.27□□□□□ -0.44
CLN3-256ENST00000637107 NFE4Q86UQ8 179 aa12.27□□□□□ -0.45
CLN3-256ENST00000637107 CEND1Q8N111 149 aa12.27□□□□□ -0.45
CLN3-256ENST00000637107 CHCHD7Q9BUK0 85 aa12.27□□□□□ -0.45
CLN3-256ENST00000637107 DEFB4AO15263 64 aa12.26□□□□□ -0.45
CLN3-256ENST00000637107 TM2D2Q9BX73 214 aa12.26□□□□□ -0.45
CLN3-256ENST00000637107 C9orf118A6NHY6 69 aa12.25□□□□□ -0.45
CLN3-256ENST00000637107 K7EP13 123 aa12.25□□□□□ -0.45
CLN3-256ENST00000637107 TMEM170BQ5T4T1 132 aa12.25□□□□□ -0.45
CLN3-256ENST00000637107 AMMECR1LQ6DCA0 310 aa12.25□□□□□ -0.45
CLN3-256ENST00000637107 Q6ZTI0 123 aa12.25□□□□□ -0.45
CLN3-256ENST00000637107 VCX2Q9H322 139 aa12.25□□□□□ -0.45
CLN3-256ENST00000637107 Q8NAQ8 132 aa12.25□□□□□ -0.45
CLN3-256ENST00000637107 PHLDA1Q8WV24 401 aaPredicted RBP12.25□□□□□ -0.45
CLN3-256ENST00000637107 FAM104AQ969W3 186 aa12.25□□□□□ -0.45
CLN3-256ENST00000637107 ZNF479Q96JC4 524 aa12.25□□□□□ -0.45
Retrieved 100 of 20,778 RNA–protein pairs in 152.3 ms