RNA–Protein interactions for RNA: ENST00000636839.1

CLN3-250, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 2,018 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-250ENST00000636839 C11orf68Q9H3H3 251 aaKnown RBP14.1□□□□□ -0.15
CLN3-250ENST00000636839 F5H768 121 aa14.1□□□□□ -0.15
CLN3-250ENST00000636839 ATP5G1P05496 136 aa14.1□□□□□ -0.15
CLN3-250ENST00000636839 UBE2D3P61077 147 aa14.1□□□□□ -0.15
CLN3-250ENST00000636839 UBE2D2P62837 147 aa14.1□□□□□ -0.15
CLN3-250ENST00000636839 RHOHQ15669 191 aa14.1□□□□□ -0.15
CLN3-250ENST00000636839 LINC00587B1AMM8 73 aa14.09□□□□□ -0.15
CLN3-250ENST00000636839 NANOS2P60321 138 aaKnown RBP14.09□□□□□ -0.15
CLN3-250ENST00000636839 C2orf66Q6UXQ4 117 aa14.09□□□□□ -0.15
CLN3-250ENST00000636839 Q8N976 141 aa14.09□□□□□ -0.15
CLN3-250ENST00000636839 VSIG2Q96IQ7 327 aa14.09□□□□□ -0.15
CLN3-250ENST00000636839 GYPEP15421 78 aa14.08□□□□□ -0.15
CLN3-250ENST00000636839 JOSD1Q15040 202 aaPredicted RBP14.08□□□□□ -0.15
CLN3-250ENST00000636839 PRADC1Q9BSG0 188 aa14.08□□□□□ -0.15
CLN3-250ENST00000636839 PRO0255Q9UI72 69 aa14.08□□□□□ -0.15
CLN3-250ENST00000636839 MEGF8Q7Z7M0 2845 aa14.08□□□□□ -0.16
CLN3-250ENST00000636839 Q6ZTC4 211 aa14.08□□□□□ -0.16
CLN3-250ENST00000636839 HSPB8Q9UJY1 196 aa14.08□□□□□ -0.16
CLN3-250ENST00000636839 K7EMI3 77 aa14.07□□□□□ -0.16
CLN3-250ENST00000636839 SCGB1D1O95968 90 aa14.07□□□□□ -0.16
CLN3-250ENST00000636839 TOMM6Q96B49 74 aa14.07□□□□□ -0.16
CLN3-250ENST00000636839 DNAH9Q9NYC9 4486 aa14.07□□□□□ -0.16
CLN3-250ENST00000636839 TRAV26-1A0A087WT03 109 aa14.07□□□□□ -0.16
CLN3-250ENST00000636839 PAX4O43316 350 aa14.07□□□□□ -0.16
CLN3-250ENST00000636839 NTM-AS1Q6ZSK4 140 aa14.07□□□□□ -0.16
CLN3-250ENST00000636839 A0A096LPF7 62 aa14.06□□□□□ -0.16
CLN3-250ENST00000636839 IFI27L1Q96BM0 104 aa14.06□□□□□ -0.16
CLN3-250ENST00000636839 SYS1-DBNDD2H3BUS1 97 aa14.05□□□□□ -0.16
CLN3-250ENST00000636839 DEFA6Q01524 100 aa14.05□□□□□ -0.16
CLN3-250ENST00000636839 PMCHL2Q9BQD1 86 aa14.05□□□□□ -0.16
CLN3-250ENST00000636839 CHCHD7Q9BUK0 85 aa14.05□□□□□ -0.16
CLN3-250ENST00000636839 LINC00694P0DN24 101 aa14.05□□□□□ -0.16
CLN3-250ENST00000636839 C11orf45Q8TAV5 145 aa14.05□□□□□ -0.16
CLN3-250ENST00000636839 COTL1Q14019 142 aa14.04□□□□□ -0.16
CLN3-250ENST00000636839 C20orf203Q8NBC4 194 aa14.04□□□□□ -0.16
CLN3-250ENST00000636839 SCGB3A1Q96QR1 104 aa14.04□□□□□ -0.16
CLN3-250ENST00000636839 MAP1LC3CQ9BXW4 147 aa14.04□□□□□ -0.16
CLN3-250ENST00000636839 ZMAT4Q9H898 229 aa14.04□□□□□ -0.16
CLN3-250ENST00000636839 IGKV2D-29A0A075B6S2 120 aaPredicted RBP14.03□□□□□ -0.16
CLN3-250ENST00000636839 IGKV2-29A2NJV5 120 aaPredicted RBP14.03□□□□□ -0.16
CLN3-250ENST00000636839 DAZ4Q86SG3 579 aaKnown RBP14.03□□□□□ -0.16
CLN3-250ENST00000636839 OPRPNQ99935 248 aaPredicted RBP14.03□□□□□ -0.16
CLN3-250ENST00000636839 B9D2Q9BPU9 175 aa14.03□□□□□ -0.16
CLN3-250ENST00000636839 DAZ3Q9NR90 486 aaKnown RBP14.03□□□□□ -0.16
CLN3-250ENST00000636839 CYSLTR1Q9Y271 337 aa14.03□□□□□ -0.16
CLN3-250ENST00000636839 TEX48A0A1B0GUV7 120 aa14.03□□□□□ -0.16
CLN3-250ENST00000636839 CEMP1Q6PRD7 247 aaPredicted RBP14.03□□□□□ -0.16
CLN3-250ENST00000636839 ZC2HC1BQ5TFG8 222 aa14.02□□□□□ -0.16
CLN3-250ENST00000636839 ATOH7Q8N100 152 aa14.02□□□□□ -0.16
CLN3-250ENST00000636839 PRKDCP78527 4128 aaKnown RBP14.01□□□□□ -0.17
CLN3-250ENST00000636839 IGIPA6NJ69 53 aa14.01□□□□□ -0.17
CLN3-250ENST00000636839 PRSS1P07477 247 aa13.99□□□□□ -0.17
CLN3-250ENST00000636839 BORCS8-MEF2BH3BNR1 382 aaPredicted RBP13.98□□□□□ -0.17
CLN3-250ENST00000636839 ATP5LO75964 103 aa13.98□□□□□ -0.17
CLN3-250ENST00000636839 ERASQ7Z444 233 aa13.98□□□□□ -0.17
CLN3-250ENST00000636839 ATP6V0E2Q8NHE4 81 aa13.98□□□□□ -0.17
CLN3-250ENST00000636839 FAM104AQ969W3 186 aa13.98□□□□□ -0.17
CLN3-250ENST00000636839 PET117Q6UWS5 81 aa13.97□□□□□ -0.17
CLN3-250ENST00000636839 STAB2Q8WWQ8 2551 aa13.97□□□□□ -0.17
CLN3-250ENST00000636839 MAJINQ3KP22 176 aa13.97□□□□□ -0.17
CLN3-250ENST00000636839 BAALCQ8WXS3 180 aa13.97□□□□□ -0.17
CLN3-250ENST00000636839 LINC01545Q5VT33 79 aa13.96□□□□□ -0.17
CLN3-250ENST00000636839 DEFB131BA0A096LNP1 70 aa13.95□□□□□ -0.18
CLN3-250ENST00000636839 RNASE13Q5GAN3 156 aaKnown RBP13.95□□□□□ -0.18
CLN3-250ENST00000636839 G0S2P27469 103 aa13.95□□□□□ -0.18
CLN3-250ENST00000636839 Q6ZN92 141 aa13.95□□□□□ -0.18
CLN3-250ENST00000636839 GTSF1LQ9H1H1 148 aa13.95□□□□□ -0.18
CLN3-250ENST00000636839 UBE2D4Q9Y2X8 147 aa13.95□□□□□ -0.18
CLN3-250ENST00000636839 TRBV6-8A0A0A6YYG3 113 aa13.94□□□□□ -0.18
CLN3-250ENST00000636839 ODF1Q14990 250 aa13.93□□□□□ -0.18
CLN3-250ENST00000636839 TIMM17AQ99595 171 aa13.93□□□□□ -0.18
CLN3-250ENST00000636839 IGLV4-3A0A075B6K6 122 aa13.92□□□□□ -0.18
CLN3-250ENST00000636839 PRSS29PA6NIE9 313 aa13.92□□□□□ -0.18
CLN3-250ENST00000636839 TEX43Q6ZNM6 134 aa13.92□□□□□ -0.18
CLN3-250ENST00000636839 TRBV25-1A0A075B6N4 114 aa13.91□□□□□ -0.18
CLN3-250ENST00000636839 GAGE6Q13070 117 aa13.91□□□□□ -0.18
CLN3-250ENST00000636839 TMEM141Q96I45 108 aa13.91□□□□□ -0.18
CLN3-250ENST00000636839 TMEM243Q9BU79 118 aa13.91□□□□□ -0.18
CLN3-250ENST00000636839 MRPL23Q16540 153 aaKnown RBP13.91□□□□□ -0.18
CLN3-250ENST00000636839 LGALS9CQ6DKI2 356 aa13.91□□□□□ -0.18
CLN3-250ENST00000636839 MRPL35Q9NZE8 188 aaKnown RBP13.91□□□□□ -0.18
CLN3-250ENST00000636839 ICOSQ9Y6W8 199 aa13.91□□□□□ -0.18
CLN3-250ENST00000636839 FGF6P10767 208 aa13.9□□□□□ -0.18
CLN3-250ENST00000636839 A0A087WX48 190 aa13.9□□□□□ -0.18
CLN3-250ENST00000636839 Q6ZUT4 128 aa13.9□□□□□ -0.18
CLN3-250ENST00000636839 CST9LQ9H4G1 147 aa13.9□□□□□ -0.18
CLN3-250ENST00000636839 PYGO1Q9Y3Y4 419 aa13.9□□□□□ -0.18
CLN3-250ENST00000636839 hDV102S1A0JD36 115 aa13.89□□□□□ -0.19
CLN3-250ENST00000636839 C20orf202A1L168 122 aa13.89□□□□□ -0.19
CLN3-250ENST00000636839 CHCHD5Q9BSY4 110 aa13.89□□□□□ -0.19
CLN3-250ENST00000636839 PAM16Q9Y3D7 125 aa13.88□□□□□ -0.19
CLN3-250ENST00000636839 TRAV12-1A0A0B4J245 112 aa13.87□□□□□ -0.19
CLN3-250ENST00000636839 LINC01549A6NIU2 74 aa13.87□□□□□ -0.19
CLN3-250ENST00000636839 TCTAP57738 103 aa13.87□□□□□ -0.19
CLN3-250ENST00000636839 PMVKQ15126 192 aa13.87□□□□□ -0.19
CLN3-250ENST00000636839 ZNF664Q8N3J9 261 aa13.87□□□□□ -0.19
CLN3-250ENST00000636839 SPANXA1Q9NS26 97 aa13.87□□□□□ -0.19
CLN3-250ENST00000636839 UBE2L6O14933 153 aa13.86□□□□□ -0.19
CLN3-250ENST00000636839 Q8N3U1 123 aa13.86□□□□□ -0.19
CLN3-250ENST00000636839 CHTOPQ9Y3Y2 248 aaKnown RBP13.86□□□□□ -0.19
Retrieved 100 of 20,778 RNA–protein pairs in 245.4 ms