RNA–Protein interactions for RNA: ENST00000636147.1

CLN3-244, Transcript of CLN3, battenin, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CLN3, Length 3,832 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-244ENST00000636147 POLR2KP53803 58 aaKnown RBP8.26□□□□□ -1.09
CLN3-244ENST00000636147 TRGV2A0A075B6R0 118 aa8.26□□□□□ -1.09
CLN3-244ENST00000636147 PROK1P58294 105 aa8.26□□□□□ -1.09
CLN3-244ENST00000636147 MAPK1IP1LQ8NDC0 245 aa8.26□□□□□ -1.09
CLN3-244ENST00000636147 PSMG3-AS1Q96PY0 264 aa8.26□□□□□ -1.09
CLN3-244ENST00000636147 PFN2P35080 140 aa8.26□□□□□ -1.09
CLN3-244ENST00000636147 ZNF415Q09FC8 603 aa8.26□□□□□ -1.09
CLN3-244ENST00000636147 GPHB5Q86YW7 130 aa8.26□□□□□ -1.09
CLN3-244ENST00000636147 IGLV4-3A0A075B6K6 122 aa8.25□□□□□ -1.09
CLN3-244ENST00000636147 A0A1W2PRX2 142 aa8.25□□□□□ -1.09
CLN3-244ENST00000636147 H3BT86 120 aa8.25□□□□□ -1.09
CLN3-244ENST00000636147 PRM2P04554 102 aa8.25□□□□□ -1.09
CLN3-244ENST00000636147 RPL32P62910 135 aaKnown RBP8.25□□□□□ -1.09
CLN3-244ENST00000636147 FHL3Q13643 280 aa8.25□□□□□ -1.09
CLN3-244ENST00000636147 Q8N6K4 173 aa8.25□□□□□ -1.09
CLN3-244ENST00000636147 ABCA12Q86UK0 2595 aa8.25□□□□□ -1.09
CLN3-244ENST00000636147 MED14OSP0DP75 135 aa8.25□□□□□ -1.09
CLN3-244ENST00000636147 IGHV1-58A0A0C4DH39 117 aa8.24□□□□□ -1.09
CLN3-244ENST00000636147 TINCRA0A1B0GVN0 87 aa8.24□□□□□ -1.09
CLN3-244ENST00000636147 TSHBP01222 138 aa8.24□□□□□ -1.09
CLN3-244ENST00000636147 EBI3Q14213 229 aa8.24□□□□□ -1.09
CLN3-244ENST00000636147 TMEM263Q8WUH6 116 aaKnown RBP8.24□□□□□ -1.09
CLN3-244ENST00000636147 IGKV3D-7A0A0C4DH55 119 aa8.24□□□□□ -1.09
CLN3-244ENST00000636147 M0QY20 66 aa8.24□□□□□ -1.09
CLN3-244ENST00000636147 ZFYVE26Q68DK2 2539 aa8.24□□□□□ -1.09
CLN3-244ENST00000636147 EDN2P20800 178 aa8.24□□□□□ -1.09
CLN3-244ENST00000636147 CFHR3Q02985 330 aa8.24□□□□□ -1.09
CLN3-244ENST00000636147 Q9HAA7 133 aa8.24□□□□□ -1.09
CLN3-244ENST00000636147 ATMQ13315 3056 aa8.23□□□□□ -1.09
CLN3-244ENST00000636147 RPL36AP83881 106 aaKnown RBP8.23□□□□□ -1.09
CLN3-244ENST00000636147 RPL36ALQ969Q0 106 aaKnown RBP8.23□□□□□ -1.09
CLN3-244ENST00000636147 CENPEQ02224 2701 aa8.23□□□□□ -1.09
CLN3-244ENST00000636147 TRBV27A0A0K0K1C4 114 aa8.23□□□□□ -1.09
CLN3-244ENST00000636147 COX6B1P14854 86 aa8.23□□□□□ -1.09
CLN3-244ENST00000636147 CDKN2A-AS1Q9UH64 79 aa8.23□□□□□ -1.09
CLN3-244ENST00000636147 DEFB136Q30KP8 78 aa8.23□□□□□ -1.09
CLN3-244ENST00000636147 K7ENP7 123 aa8.22□□□□□ -1.09
CLN3-244ENST00000636147 IGHV4OR15-8A0A075B7B6 117 aa8.22□□□□□ -1.09
CLN3-244ENST00000636147 A0A087WW49 117 aa8.22□□□□□ -1.09
CLN3-244ENST00000636147 CDSNQ15517 529 aa8.22□□□□□ -1.09
CLN3-244ENST00000636147 MIAQ16674 131 aa8.22□□□□□ -1.09
CLN3-244ENST00000636147 H7C423 109 aa8.22□□□□□ -1.09
CLN3-244ENST00000636147 ELANEP08246 267 aa8.22□□□□□ -1.09
CLN3-244ENST00000636147 INAFM2P0DMQ5 153 aa8.22□□□□□ -1.09
CLN3-244ENST00000636147 IGHV4-61A0A0C4DH41 118 aa8.21□□□□□ -1.09
CLN3-244ENST00000636147 TRBV30A0A0K0K1B3 111 aa8.21□□□□□ -1.09
CLN3-244ENST00000636147 STHQ8IWL8 128 aa8.21□□□□□ -1.09
CLN3-244ENST00000636147 SPANXA1Q9NS26 97 aa8.21□□□□□ -1.09
CLN3-244ENST00000636147 MTORP42345 2549 aa8.21□□□□□ -1.09
CLN3-244ENST00000636147 LINC01546A6NGU7 62 aa8.21□□□□□ -1.1
CLN3-244ENST00000636147 NXPH4O95158 308 aa8.21□□□□□ -1.1
CLN3-244ENST00000636147 ASPMQ8IZT6 3477 aa8.21□□□□□ -1.1
CLN3-244ENST00000636147 IGHV4-59P01825 116 aa8.2□□□□□ -1.1
CLN3-244ENST00000636147 ADORA2A-AS1P86434 159 aa8.2□□□□□ -1.1
CLN3-244ENST00000636147 A0A0J9YX75 114 aa8.2□□□□□ -1.1
CLN3-244ENST00000636147 RBMY1BA6NDE4 496 aaKnown RBP8.2□□□□□ -1.1
CLN3-244ENST00000636147 RBMY1EA6NEQ0 496 aaKnown RBP8.2□□□□□ -1.1
CLN3-244ENST00000636147 RBMY1DP0C7P1 496 aaKnown RBP8.2□□□□□ -1.1
CLN3-244ENST00000636147 RBMY1A1P0DJD3 496 aaKnown RBP8.2□□□□□ -1.1
CLN3-244ENST00000636147 RBMY1CP0DJD4 496 aa8.2□□□□□ -1.1
CLN3-244ENST00000636147 UCNP55089 124 aa8.2□□□□□ -1.1
CLN3-244ENST00000636147 LRRK2Q5S007 2527 aa8.2□□□□□ -1.1
CLN3-244ENST00000636147 C10orf99Q6UWK7 81 aa8.2□□□□□ -1.1
CLN3-244ENST00000636147 APRG1Q8IVJ8 170 aa8.2□□□□□ -1.1
CLN3-244ENST00000636147 LMO4P61968 165 aa8.19□□□□□ -1.1
CLN3-244ENST00000636147 DAZ2Q13117 558 aaKnown RBP8.19□□□□□ -1.1
CLN3-244ENST00000636147 ADAMTSL4-AS1Q5T5F5 129 aa8.19□□□□□ -1.1
CLN3-244ENST00000636147 DAZ4Q86SG3 579 aaKnown RBP8.19□□□□□ -1.1
CLN3-244ENST00000636147 DAZ3Q9NR90 486 aaKnown RBP8.19□□□□□ -1.1
CLN3-244ENST00000636147 TRGV4A0A0C4DH28 118 aa8.19□□□□□ -1.1
CLN3-244ENST00000636147 U3KQE9 123 aa8.19□□□□□ -1.1
CLN3-244ENST00000636147 VSIG2Q96IQ7 327 aa8.19□□□□□ -1.1
CLN3-244ENST00000636147 C6orf226Q5I0X4 101 aa8.18□□□□□ -1.1
CLN3-244ENST00000636147 IGF2-ASQ6U949 168 aa8.18□□□□□ -1.1
CLN3-244ENST00000636147 HERVK_113P63121 156 aa8.18□□□□□ -1.1
CLN3-244ENST00000636147 NSUN5P1Q3KNT7 163 aa8.18□□□□□ -1.1
CLN3-244ENST00000636147 POM121L12Q8N7R1 296 aa8.18□□□□□ -1.1
CLN3-244ENST00000636147 LINC00467Q9BRT7 94 aa8.18□□□□□ -1.1
CLN3-244ENST00000636147 FASNP49327 2511 aaKnown RBP8.18□□□□□ -1.1
CLN3-244ENST00000636147 MSMBP08118 114 aa8.18□□□□□ -1.1
CLN3-244ENST00000636147 A0A1B0GX51 115 aa8.17□□□□□ -1.1
CLN3-244ENST00000636147 INSP01308 110 aa8.17□□□□□ -1.1
CLN3-244ENST00000636147 IGHG2P01859 326 aa8.17□□□□□ -1.1
CLN3-244ENST00000636147 TMEM61Q8N0U2 210 aa8.17□□□□□ -1.1
CLN3-244ENST00000636147 NBL1P41271 181 aa8.17□□□□□ -1.1
CLN3-244ENST00000636147 ATP5G1P05496 136 aa8.17□□□□□ -1.1
CLN3-244ENST00000636147 ACYP1P07311 99 aa8.17□□□□□ -1.1
CLN3-244ENST00000636147 PIK3CD-AS1Q5SR53 167 aa8.17□□□□□ -1.1
CLN3-244ENST00000636147 KLLNB2CW77 178 aa8.16□□□□□ -1.1
CLN3-244ENST00000636147 LST1O00453 97 aa8.16□□□□□ -1.1
CLN3-244ENST00000636147 TRACP01848 142 aa8.16□□□□□ -1.1
CLN3-244ENST00000636147 GNLYP22749 145 aa8.16□□□□□ -1.1
CLN3-244ENST00000636147 TMEM126AQ9H061 195 aa8.16□□□□□ -1.1
CLN3-244ENST00000636147 TRBV6-5A0A0K0K1A5 114 aa8.16□□□□□ -1.1
CLN3-244ENST00000636147 PEMTQ9UBM1 199 aa8.16□□□□□ -1.1
CLN3-244ENST00000636147 B4DSR2 109 aa8.16□□□□□ -1.1
CLN3-244ENST00000636147 SOCS3O14543 225 aa8.16□□□□□ -1.1
CLN3-244ENST00000636147 SLURP1P55000 103 aa8.16□□□□□ -1.1
CLN3-244ENST00000636147 SDIM1Q6ZPB5 146 aa8.16□□□□□ -1.1
CLN3-244ENST00000636147 LINC00643Q86TS7 51 aa8.16□□□□□ -1.1
Retrieved 100 of 20,778 RNA–protein pairs in 91.9 ms