RNA–Protein interactions for RNA: ENST00000601912.5

VRK3-225, Transcript of vaccinia related kinase 3, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene VRK3, Length 1,668 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-225ENST00000601912 CYSLTR1Q9Y271 337 aa12.67□□□□□ -0.38
VRK3-225ENST00000601912 IGHV3-38A0A0C4DH36 116 aa12.66□□□□□ -0.38
VRK3-225ENST00000601912 LOC100131303A0A0U1RQF7 123 aa12.66□□□□□ -0.38
VRK3-225ENST00000601912 PAX4O43316 350 aa12.66□□□□□ -0.38
VRK3-225ENST00000601912 SMIM6P0DI80 62 aa12.66□□□□□ -0.38
VRK3-225ENST00000601912 HTN3P15516 51 aa12.66□□□□□ -0.38
VRK3-225ENST00000601912 B9D2Q9BPU9 175 aa12.66□□□□□ -0.38
VRK3-225ENST00000601912 ATP5LO75964 103 aa12.65□□□□□ -0.38
VRK3-225ENST00000601912 SCGB1D1O95968 90 aa12.65□□□□□ -0.38
VRK3-225ENST00000601912 PYY3Q5JQD4 70 aa12.65□□□□□ -0.38
VRK3-225ENST00000601912 IFI27L1Q96BM0 104 aa12.65□□□□□ -0.38
VRK3-225ENST00000601912 GYPEP15421 78 aa12.64□□□□□ -0.39
VRK3-225ENST00000601912 C11orf45Q8TAV5 145 aa12.64□□□□□ -0.39
VRK3-225ENST00000601912 SYS1-DBNDD2H3BUS1 97 aa12.64□□□□□ -0.39
VRK3-225ENST00000601912 SCGB3A1Q96QR1 104 aa12.64□□□□□ -0.39
VRK3-225ENST00000601912 C20orf203Q8NBC4 194 aa12.63□□□□□ -0.39
VRK3-225ENST00000601912 BORCS8-MEF2BH3BNR1 382 aaPredicted RBP12.62□□□□□ -0.39
VRK3-225ENST00000601912 TRAV26-1A0A087WT03 109 aa12.61□□□□□ -0.39
VRK3-225ENST00000601912 A0A0J9YY99 117 aa12.61□□□□□ -0.39
VRK3-225ENST00000601912 LINC00694P0DN24 101 aa12.61□□□□□ -0.39
VRK3-225ENST00000601912 PET117Q6UWS5 81 aa12.61□□□□□ -0.39
VRK3-225ENST00000601912 ERASQ7Z444 233 aa12.61□□□□□ -0.39
VRK3-225ENST00000601912 GTSF1LQ9H1H1 148 aa12.61□□□□□ -0.39
VRK3-225ENST00000601912 C20orf202A1L168 122 aa12.61□□□□□ -0.39
VRK3-225ENST00000601912 H0Y8G0 127 aa12.61□□□□□ -0.39
VRK3-225ENST00000601912 RPL39P62891 51 aaKnown RBP12.61□□□□□ -0.39
VRK3-225ENST00000601912 Q6ZTC4 211 aa12.61□□□□□ -0.39
VRK3-225ENST00000601912 VSIG2Q96IQ7 327 aa12.61□□□□□ -0.39
VRK3-225ENST00000601912 PRSS1P07477 247 aa12.6□□□□□ -0.39
VRK3-225ENST00000601912 NANOS2P60321 138 aaKnown RBP12.6□□□□□ -0.39
VRK3-225ENST00000601912 TMEM97Q5BJF2 176 aa12.6□□□□□ -0.39
VRK3-225ENST00000601912 Q6ZN92 141 aa12.6□□□□□ -0.39
VRK3-225ENST00000601912 SPATA12Q7Z6I5 190 aa12.6□□□□□ -0.39
VRK3-225ENST00000601912 LINC00518Q8N0U6 118 aa12.6□□□□□ -0.39
VRK3-225ENST00000601912 ATP6V0E2Q8NHE4 81 aa12.6□□□□□ -0.39
VRK3-225ENST00000601912 CHCHD7Q9BUK0 85 aa12.6□□□□□ -0.39
VRK3-225ENST00000601912 DNHD1Q96M86 4753 aa12.6□□□□□ -0.39
VRK3-225ENST00000601912 C12orf57Q99622 126 aa12.59□□□□□ -0.39
VRK3-225ENST00000601912 TENM3Q9P273 2699 aa12.59□□□□□ -0.39
VRK3-225ENST00000601912 DEFA6Q01524 100 aa12.58□□□□□ -0.4
VRK3-225ENST00000601912 TMEM141Q96I45 108 aa12.58□□□□□ -0.4
VRK3-225ENST00000601912 TIMM17AQ99595 171 aa12.58□□□□□ -0.4
VRK3-225ENST00000601912 IGIPA6NJ69 53 aa12.57□□□□□ -0.4
VRK3-225ENST00000601912 NHLRC4P0CG21 123 aaPredicted RBP12.57□□□□□ -0.4
VRK3-225ENST00000601912 MRPL23Q16540 153 aaKnown RBP12.57□□□□□ -0.4
VRK3-225ENST00000601912 TRBV25-1A0A075B6N4 114 aa12.57□□□□□ -0.4
VRK3-225ENST00000601912 NTM-AS1Q6ZSK4 140 aa12.57□□□□□ -0.4
VRK3-225ENST00000601912 SH2D6Q7Z4S9 175 aa12.57□□□□□ -0.4
VRK3-225ENST00000601912 Q8N976 141 aa12.57□□□□□ -0.4
VRK3-225ENST00000601912 ICOSQ9Y6W8 199 aa12.57□□□□□ -0.4
VRK3-225ENST00000601912 IGKV2D-29A0A075B6S2 120 aaPredicted RBP12.55□□□□□ -0.4
VRK3-225ENST00000601912 DEFB131BA0A096LNP1 70 aa12.55□□□□□ -0.4
VRK3-225ENST00000601912 IGKV2-29A2NJV5 120 aaPredicted RBP12.55□□□□□ -0.4
VRK3-225ENST00000601912 H3BNG1 76 aa12.55□□□□□ -0.4
VRK3-225ENST00000601912 LINC01545Q5VT33 79 aa12.55□□□□□ -0.4
VRK3-225ENST00000601912 TMEM243Q9BU79 118 aa12.55□□□□□ -0.4
VRK3-225ENST00000601912 PYGO1Q9Y3Y4 419 aa12.55□□□□□ -0.4
VRK3-225ENST00000601912 TRBV6-8A0A0A6YYG3 113 aa12.54□□□□□ -0.4
VRK3-225ENST00000601912 SMAGPQ0VAQ4 97 aa12.54□□□□□ -0.4
VRK3-225ENST00000601912 LGALS9CQ6DKI2 356 aa12.54□□□□□ -0.4
VRK3-225ENST00000601912 SPANXA1Q9NS26 97 aa12.54□□□□□ -0.4
VRK3-225ENST00000601912 UBE2L6O14933 153 aa12.54□□□□□ -0.4
VRK3-225ENST00000601912 S100A12P80511 92 aa12.54□□□□□ -0.4
VRK3-225ENST00000601912 PAPPA-AS1Q5QFB9 102 aa12.54□□□□□ -0.4
VRK3-225ENST00000601912 A0A096LPF7 62 aa12.53□□□□□ -0.4
VRK3-225ENST00000601912 NPSP0C0P6 89 aa12.53□□□□□ -0.4
VRK3-225ENST00000601912 BAALCQ8WXS3 180 aa12.53□□□□□ -0.4
VRK3-225ENST00000601912 UBE2D4Q9Y2X8 147 aa12.53□□□□□ -0.4
VRK3-225ENST00000601912 TRAV10A0A0B4J240 114 aa12.52□□□□□ -0.4
VRK3-225ENST00000601912 TRAV12-1A0A0B4J245 112 aa12.52□□□□□ -0.4
VRK3-225ENST00000601912 H7C423 109 aa12.52□□□□□ -0.4
VRK3-225ENST00000601912 CDPF1Q6NVV7 123 aa12.52□□□□□ -0.4
VRK3-225ENST00000601912 DGAT2L7PQ6IED9 249 aa12.51□□□□□ -0.41
VRK3-225ENST00000601912 PMCHL2Q9BQD1 86 aa12.51□□□□□ -0.41
VRK3-225ENST00000601912 TIMM21Q9BVV7 248 aa12.51□□□□□ -0.41
VRK3-225ENST00000601912 A0A087WX48 190 aa12.51□□□□□ -0.41
VRK3-225ENST00000601912 ODF1Q14990 250 aa12.51□□□□□ -0.41
VRK3-225ENST00000601912 PMVKQ15126 192 aa12.51□□□□□ -0.41
VRK3-225ENST00000601912 TEX43Q6ZNM6 134 aa12.51□□□□□ -0.41
VRK3-225ENST00000601912 HUWE1Q7Z6Z7 4374 aaKnown RBP12.5□□□□□ -0.41
VRK3-225ENST00000601912 FGF6P10767 208 aa12.5□□□□□ -0.41
VRK3-225ENST00000601912 AMMECR1LQ6DCA0 310 aa12.5□□□□□ -0.41
VRK3-225ENST00000601912 CHCHD5Q9BSY4 110 aa12.5□□□□□ -0.41
VRK3-225ENST00000601912 VCX2Q9H322 139 aa12.5□□□□□ -0.41
VRK3-225ENST00000601912 IGLV4-3A0A075B6K6 122 aa12.49□□□□□ -0.41
VRK3-225ENST00000601912 PRSS29PA6NIE9 313 aa12.49□□□□□ -0.41
VRK3-225ENST00000601912 CEMP1Q6PRD7 247 aaPredicted RBP12.49□□□□□ -0.41
VRK3-225ENST00000601912 MRPL52Q86TS9 123 aaKnown RBP12.49□□□□□ -0.41
VRK3-225ENST00000601912 ATOH7Q8N100 152 aa12.49□□□□□ -0.41
VRK3-225ENST00000601912 OPRPNQ99935 248 aaPredicted RBP12.49□□□□□ -0.41
VRK3-225ENST00000601912 CSDC2Q9Y534 153 aaKnown RBP12.49□□□□□ -0.41
VRK3-225ENST00000601912 VAMP8Q9BV40 100 aa12.48□□□□□ -0.41
VRK3-225ENST00000601912 CST9LQ9H4G1 147 aa12.48□□□□□ -0.41
VRK3-225ENST00000601912 CHTOPQ9Y3Y2 248 aaKnown RBP12.48□□□□□ -0.41
VRK3-225ENST00000601912 MRPS36P82909 103 aaKnown RBP12.48□□□□□ -0.41
VRK3-225ENST00000601912 TMEM101Q96IK0 257 aa12.48□□□□□ -0.41
VRK3-225ENST00000601912 F8VRH5 84 aa12.47□□□□□ -0.41
VRK3-225ENST00000601912 GAGE6Q13070 117 aa12.47□□□□□ -0.41
VRK3-225ENST00000601912 OR5A1Q8NGJ0 315 aa12.47□□□□□ -0.41
VRK3-225ENST00000601912 MRPL35Q9NZE8 188 aaKnown RBP12.47□□□□□ -0.41
Retrieved 100 of 20,778 RNA–protein pairs in 63.8 ms