RNA–Protein interactions for RNA: ENST00000599848.5

UPF1-207, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 1 (best) BASIC

Gene UPF1, Length 5,311 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-207ENST00000599848 ATRXP46100 2492 aa15.37■□□□□ 0.05
UPF1-207ENST00000599848 HELZP42694 1942 aaKnown RBP15.37■□□□□ 0.05
UPF1-207ENST00000599848 KPRPQ5T749 579 aaPredicted RBP15.36■□□□□ 0.05
UPF1-207ENST00000599848 LINC00482Q8N8I6 264 aa15.36■□□□□ 0.05
UPF1-207ENST00000599848 BPY2O14599 106 aa15.36■□□□□ 0.05
UPF1-207ENST00000599848 ANKHD1Q8IWZ3 2542 aaKnown RBP15.35■□□□□ 0.05
UPF1-207ENST00000599848 IGLV4-69A0A075B6H9 119 aa15.35■□□□□ 0.05
UPF1-207ENST00000599848 PCP2Q8IVA1 136 aa15.35■□□□□ 0.05
UPF1-207ENST00000599848 SPANXB1Q9NS25 103 aaPredicted RBP15.35■□□□□ 0.05
UPF1-207ENST00000599848 IGKV2D-26A0A0A0MRZ7 120 aa15.34■□□□□ 0.05
UPF1-207ENST00000599848 IGLV2-33A0A075B6J2 118 aaPredicted RBP15.34■□□□□ 0.05
UPF1-207ENST00000599848 DHRS4-AS1Q9P1J3 65 aa15.33■□□□□ 0.04
UPF1-207ENST00000599848 UBE2D3P61077 147 aa15.33■□□□□ 0.04
UPF1-207ENST00000599848 HIST2H2BDQ6DRA6 164 aa15.33■□□□□ 0.04
UPF1-207ENST00000599848 IGKV1D-37A0A075B6S9 117 aa15.32■□□□□ 0.04
UPF1-207ENST00000599848 PLCE1Q9P212 2302 aa15.32■□□□□ 0.04
UPF1-207ENST00000599848 LY6LH3BQJ8 138 aa15.32■□□□□ 0.04
UPF1-207ENST00000599848 MRGPRG-AS1Q2M3A8 158 aa15.32■□□□□ 0.04
UPF1-207ENST00000599848 TCL1BO95988 128 aa15.31■□□□□ 0.04
UPF1-207ENST00000599848 CHCHD7Q9BUK0 85 aa15.31■□□□□ 0.04
UPF1-207ENST00000599848 NOTCH4Q99466 2003 aa15.31■□□□□ 0.04
UPF1-207ENST00000599848 FAM19A5Q7Z5A7 132 aaPredicted RBP15.3■□□□□ 0.04
UPF1-207ENST00000599848 C19orf71A6NCJ1 209 aa15.3■□□□□ 0.04
UPF1-207ENST00000599848 USP17L23D6RBM5 183 aa15.3■□□□□ 0.04
UPF1-207ENST00000599848 COA6Q5JTJ3 125 aaKnown RBP15.3■□□□□ 0.04
UPF1-207ENST00000599848 DOCK11Q5JSL3 2073 aa15.3■□□□□ 0.04
UPF1-207ENST00000599848 CACNA1AO00555 2505 aa15.29■□□□□ 0.04
UPF1-207ENST00000599848 TNCP24821 2201 aa15.29■□□□□ 0.04
UPF1-207ENST00000599848 A0A0J9YXY3 114 aa15.29■□□□□ 0.04
UPF1-207ENST00000599848 E7EUB6 86 aa15.29■□□□□ 0.04
UPF1-207ENST00000599848 NHLRC4P0CG21 123 aaPredicted RBP15.29■□□□□ 0.04
UPF1-207ENST00000599848 DAND5Q8N907 189 aa15.29■□□□□ 0.04
UPF1-207ENST00000599848 C9orf85Q96MD7 179 aa15.29■□□□□ 0.04
UPF1-207ENST00000599848 IGLV2-18A0A075B6J9 118 aa15.29■□□□□ 0.04
UPF1-207ENST00000599848 CD164L2Q6UWJ8 174 aa15.29■□□□□ 0.04
UPF1-207ENST00000599848 SONP18583 2426 aaKnown RBP15.29■□□□□ 0.04
UPF1-207ENST00000599848 DEFB1P60022 68 aa15.28■□□□□ 0.04
UPF1-207ENST00000599848 CFAP126Q5VTH2 177 aa15.28■□□□□ 0.04
UPF1-207ENST00000599848 NEXN-AS1Q8NBZ9 246 aa15.28■□□□□ 0.04
UPF1-207ENST00000599848 CRYGBP07316 175 aa15.27■□□□□ 0.04
UPF1-207ENST00000599848 KMT2EQ8IZD2 1858 aa15.27■□□□□ 0.04
UPF1-207ENST00000599848 ASPHD1Q5U4P2 390 aa15.27■□□□□ 0.04
UPF1-207ENST00000599848 TEN1Q86WV5 123 aa15.26■□□□□ 0.03
UPF1-207ENST00000599848 PIK3CD-AS1Q5SR53 167 aa15.26■□□□□ 0.03
UPF1-207ENST00000599848 M0R378 163 aa15.25■□□□□ 0.03
UPF1-207ENST00000599848 SPATA12Q7Z6I5 190 aa15.25■□□□□ 0.03
UPF1-207ENST00000599848 SPG11Q96JI7 2443 aa15.25■□□□□ 0.03
UPF1-207ENST00000599848 M0R2N4 97 aa15.25■□□□□ 0.03
UPF1-207ENST00000599848 IGLV2-14P01704 120 aa15.24■□□□□ 0.03
UPF1-207ENST00000599848 ZFAND3Q9H8U3 227 aa15.24■□□□□ 0.03
UPF1-207ENST00000599848 BBC3Q96PG8 261 aaPredicted RBP15.24■□□□□ 0.03
UPF1-207ENST00000599848 SHANK1Q9Y566 2161 aa15.23■□□□□ 0.03
UPF1-207ENST00000599848 WISP2O76076 250 aa15.23■□□□□ 0.03
UPF1-207ENST00000599848 IGLC6P0CF74 106 aa15.23■□□□□ 0.03
UPF1-207ENST00000599848 LINC00467Q9BRT7 94 aa15.23■□□□□ 0.03
UPF1-207ENST00000599848 ATP5EP2Q5VTU8 51 aa15.23■□□□□ 0.03
UPF1-207ENST00000599848 P0C879 139 aa15.22■□□□□ 0.03
UPF1-207ENST00000599848 RPL28P46779 137 aaKnown RBP15.22■□□□□ 0.03
UPF1-207ENST00000599848 ANKRD39Q53RE8 183 aa15.22■□□□□ 0.03
UPF1-207ENST00000599848 RBX1P62877 108 aa15.22■□□□□ 0.03
UPF1-207ENST00000599848 TP53TG3Q9ULZ0 132 aa15.22■□□□□ 0.03
UPF1-207ENST00000599848 PTPN13Q12923 2485 aa15.21■□□□□ 0.03
UPF1-207ENST00000599848 IGKV3D-7A0A0C4DH55 119 aa15.21■□□□□ 0.03
UPF1-207ENST00000599848 IGHV4-30-4P0DP06 118 aa15.21■□□□□ 0.02
UPF1-207ENST00000599848 PYGO1Q9Y3Y4 419 aa15.21■□□□□ 0.02
UPF1-207ENST00000599848 U3KQK5 164 aa15.21■□□□□ 0.02
UPF1-207ENST00000599848 A0A096LNI7 61 aa15.2■□□□□ 0.02
UPF1-207ENST00000599848 IGLV1-40P01703 118 aa15.2■□□□□ 0.02
UPF1-207ENST00000599848 NDUFC2O95298 119 aa15.2■□□□□ 0.02
UPF1-207ENST00000599848 Q8N6K4 173 aa15.2■□□□□ 0.02
UPF1-207ENST00000599848 SPTSSBQ8NFR3 76 aa15.19■□□□□ 0.02
UPF1-207ENST00000599848 A0A0J9YWU9 116 aa15.18■□□□□ 0.02
UPF1-207ENST00000599848 UBE2D2P62837 147 aa15.18■□□□□ 0.02
UPF1-207ENST00000599848 C16orf95Q9H693 158 aa15.18■□□□□ 0.02
UPF1-207ENST00000599848 CSPG4Q6UVK1 2322 aa15.18■□□□□ 0.02
UPF1-207ENST00000599848 PIEZO1Q92508 2521 aa15.18■□□□□ 0.02
UPF1-207ENST00000599848 DYSFO75923 2080 aa15.18■□□□□ 0.02
UPF1-207ENST00000599848 TRBV6-5A0A0K0K1A5 114 aa15.18■□□□□ 0.02
UPF1-207ENST00000599848 TRAV23DV6A0A075B6W5 121 aa15.18■□□□□ 0.02
UPF1-207ENST00000599848 LTBP2Q14767 1821 aa15.17■□□□□ 0.02
UPF1-207ENST00000599848 PRR15LQ9BU68 103 aa15.17■□□□□ 0.02
UPF1-207ENST00000599848 COX17Q14061 63 aa15.16■□□□□ 0.02
UPF1-207ENST00000599848 F8WDY8 70 aa15.16■□□□□ 0.02
UPF1-207ENST00000599848 CEMP1Q6PRD7 247 aaPredicted RBP15.16■□□□□ 0.02
UPF1-207ENST00000599848 M0QY20 66 aa15.15■□□□□ 0.02
UPF1-207ENST00000599848 PLAC8L1A1L4L8 177 aa15.15■□□□□ 0.02
UPF1-207ENST00000599848 C20orf173Q96LM9 149 aa15.15■□□□□ 0.02
UPF1-207ENST00000599848 TNRC6AQ8NDV7 1962 aaKnown RBP15.15■□□□□ 0.02
UPF1-207ENST00000599848 ZNF80P51504 273 aaPredicted RBP15.14■□□□□ 0.01
UPF1-207ENST00000599848 CDKN2A-AS1Q9UH64 79 aa15.14■□□□□ 0.01
UPF1-207ENST00000599848 G3V4G9 280 aa15.14■□□□□ 0.01
UPF1-207ENST00000599848 OXLD1Q5BKU9 147 aa15.14■□□□□ 0.01
UPF1-207ENST00000599848 IGLV4-3A0A075B6K6 122 aa15.14■□□□□ 0.01
UPF1-207ENST00000599848 LINC00643Q86TS7 51 aa15.14■□□□□ 0.01
UPF1-207ENST00000599848 NANOS2P60321 138 aaKnown RBP15.13■□□□□ 0.01
UPF1-207ENST00000599848 CLEC2BQ92478 149 aa15.12■□□□□ 0.01
UPF1-207ENST00000599848 TIMM17BO60830 172 aa15.12■□□□□ 0.01
UPF1-207ENST00000599848 ZNF580Q9UK33 172 aa15.12■□□□□ 0.01
UPF1-207ENST00000599848 DSCAMO60469 2012 aa15.12■□□□□ 0.01
UPF1-207ENST00000599848 XAGE1AQ9HD64 81 aa15.12■□□□□ 0.01
Retrieved 100 of 20,778 RNA–protein pairs in 449.8 ms