RNA–Protein interactions for RNA: ENST00000599538.5

VRK3-217, Transcript of vaccinia related kinase 3, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene VRK3, Length 2,126 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-217ENST00000599538 RHODO00212 210 aa10.39□□□□□ -0.75
VRK3-217ENST00000599538 CRLF1O75462 422 aa10.39□□□□□ -0.75
VRK3-217ENST00000599538 ZNRF2Q8NHG8 242 aa10.39□□□□□ -0.75
VRK3-217ENST00000599538 TEP1Q99973 2627 aaKnown RBP10.38□□□□□ -0.75
VRK3-217ENST00000599538 TRRAPQ9Y4A5 3859 aa10.38□□□□□ -0.75
VRK3-217ENST00000599538 LINC01549A6NIU2 74 aa10.37□□□□□ -0.75
VRK3-217ENST00000599538 HSD52Q0P140 79 aa10.37□□□□□ -0.75
VRK3-217ENST00000599538 KIRREL3-AS3Q8N7Y1 241 aaPredicted RBP10.37□□□□□ -0.75
VRK3-217ENST00000599538 OR4C5Q8NGB2 326 aa10.37□□□□□ -0.75
VRK3-217ENST00000599538 CHAC1Q9BUX1 264 aa10.37□□□□□ -0.75
VRK3-217ENST00000599538 NBEAL2Q6ZNJ1 2754 aa10.37□□□□□ -0.75
VRK3-217ENST00000599538 IGLV4-3A0A075B6K6 122 aa10.37□□□□□ -0.75
VRK3-217ENST00000599538 PRADC1Q9BSG0 188 aa10.37□□□□□ -0.75
VRK3-217ENST00000599538 ORAOV1Q8WV07 137 aa10.36□□□□□ -0.75
VRK3-217ENST00000599538 CHCHD7Q9BUK0 85 aa10.36□□□□□ -0.75
VRK3-217ENST00000599538 E9PLD3 99 aa10.36□□□□□ -0.75
VRK3-217ENST00000599538 RNASE13Q5GAN3 156 aaKnown RBP10.36□□□□□ -0.75
VRK3-217ENST00000599538 HIGD1BQ9P298 99 aa10.36□□□□□ -0.75
VRK3-217ENST00000599538 IGKV2D-29A0A075B6S2 120 aaPredicted RBP10.35□□□□□ -0.75
VRK3-217ENST00000599538 IGKV2-29A2NJV5 120 aaPredicted RBP10.35□□□□□ -0.75
VRK3-217ENST00000599538 OR11H2Q8NH07 326 aa10.35□□□□□ -0.75
VRK3-217ENST00000599538 FOSL1P15407 271 aa10.34□□□□□ -0.75
VRK3-217ENST00000599538 FXYD2P54710 66 aa10.34□□□□□ -0.75
VRK3-217ENST00000599538 GAGE12BA1L429 117 aa10.34□□□□□ -0.75
VRK3-217ENST00000599538 GAGE7O76087 117 aa10.34□□□□□ -0.75
VRK3-217ENST00000599538 GAGE12FP0CL80 117 aa10.34□□□□□ -0.75
VRK3-217ENST00000599538 GAGE12GP0CL81 117 aa10.34□□□□□ -0.75
VRK3-217ENST00000599538 GAGE12IP0CL82 117 aa10.34□□□□□ -0.75
VRK3-217ENST00000599538 SEC11AP67812 179 aa10.34□□□□□ -0.75
VRK3-217ENST00000599538 GAGE1Q13065 139 aa10.34□□□□□ -0.75
VRK3-217ENST00000599538 TMEM170BQ5T4T1 132 aa10.34□□□□□ -0.75
VRK3-217ENST00000599538 MYMXA0A1B0GTQ4 84 aa10.33□□□□□ -0.76
VRK3-217ENST00000599538 GCSHP23434 173 aa10.33□□□□□ -0.76
VRK3-217ENST00000599538 DAZ2Q13117 558 aaKnown RBP10.33□□□□□ -0.76
VRK3-217ENST00000599538 A0A0J9YXV3 536 aa10.33□□□□□ -0.76
VRK3-217ENST00000599538 TSPEAR-AS2P59090 65 aa10.33□□□□□ -0.76
VRK3-217ENST00000599538 RRN3P1Q2M238 152 aa10.33□□□□□ -0.76
VRK3-217ENST00000599538 SLC25A29Q8N8R3 303 aa10.33□□□□□ -0.76
VRK3-217ENST00000599538 C16orf74Q96GX8 76 aa10.33□□□□□ -0.76
VRK3-217ENST00000599538 DNAJC30Q96LL9 226 aa10.33□□□□□ -0.76
VRK3-217ENST00000599538 C1QTNF4Q9BXJ3 329 aa10.33□□□□□ -0.76
VRK3-217ENST00000599538 TRAV4A0A0B4J268 109 aa10.32□□□□□ -0.76
VRK3-217ENST00000599538 CITED1Q99966 193 aa10.32□□□□□ -0.76
VRK3-217ENST00000599538 NAA38Q9BRA0 125 aaKnown RBP10.32□□□□□ -0.76
VRK3-217ENST00000599538 VCX2Q9H322 139 aa10.32□□□□□ -0.76
VRK3-217ENST00000599538 PLEKHB2Q96CS7 222 aa10.31□□□□□ -0.76
VRK3-217ENST00000599538 UBE2D4Q9Y2X8 147 aa10.31□□□□□ -0.76
VRK3-217ENST00000599538 PYGO1Q9Y3Y4 419 aa10.31□□□□□ -0.76
VRK3-217ENST00000599538 CCL25O15444 150 aa10.31□□□□□ -0.76
VRK3-217ENST00000599538 COTL1Q14019 142 aa10.31□□□□□ -0.76
VRK3-217ENST00000599538 PAPPA-AS1Q5QFB9 102 aa10.31□□□□□ -0.76
VRK3-217ENST00000599538 NFE4Q86UQ8 179 aa10.31□□□□□ -0.76
VRK3-217ENST00000599538 TRBV7-3A0A075B6L6 115 aa10.3□□□□□ -0.76
VRK3-217ENST00000599538 ZNF815PA8K554 130 aa10.3□□□□□ -0.76
VRK3-217ENST00000599538 K7EQD1 137 aa10.3□□□□□ -0.76
VRK3-217ENST00000599538 RAB37Q96AX2 223 aa10.3□□□□□ -0.76
VRK3-217ENST00000599538 AMELXQ99217 191 aa10.3□□□□□ -0.76
VRK3-217ENST00000599538 TRGV2A0A075B6R0 118 aa10.3□□□□□ -0.76
VRK3-217ENST00000599538 LOC100131303A0A0U1RQF7 123 aa10.3□□□□□ -0.76
VRK3-217ENST00000599538 ZNF22P17026 224 aaPredicted RBP10.3□□□□□ -0.76
VRK3-217ENST00000599538 GAGE12JA6NER3 117 aa10.29□□□□□ -0.76
VRK3-217ENST00000599538 GAGE4Q13068 117 aa10.29□□□□□ -0.76
VRK3-217ENST00000599538 GAGE5Q13069 117 aa10.29□□□□□ -0.76
VRK3-217ENST00000599538 VAMP3Q15836 100 aa10.29□□□□□ -0.76
VRK3-217ENST00000599538 GAGE13Q4V321 117 aa10.29□□□□□ -0.76
VRK3-217ENST00000599538 C9orf66Q5T8R8 295 aa10.29□□□□□ -0.76
VRK3-217ENST00000599538 NTM-AS1Q6ZSK4 140 aa10.29□□□□□ -0.76
VRK3-217ENST00000599538 Q6ZUT4 128 aa10.29□□□□□ -0.76
VRK3-217ENST00000599538 CEND1Q8N111 149 aa10.29□□□□□ -0.76
VRK3-217ENST00000599538 OVOL2Q9BRP0 275 aa10.29□□□□□ -0.76
VRK3-217ENST00000599538 IGHV3-64A0A075B6Q5 118 aa10.28□□□□□ -0.76
VRK3-217ENST00000599538 A6NDN8 102 aa10.28□□□□□ -0.76
VRK3-217ENST00000599538 K7ERJ3 54 aa10.28□□□□□ -0.76
VRK3-217ENST00000599538 LINC00694P0DN24 101 aa10.28□□□□□ -0.76
VRK3-217ENST00000599538 INSL3P51460 131 aa10.28□□□□□ -0.76
VRK3-217ENST00000599538 AMMECR1LQ6DCA0 310 aa10.28□□□□□ -0.76
VRK3-217ENST00000599538 TM2D2Q9BX73 214 aa10.28□□□□□ -0.76
VRK3-217ENST00000599538 TMEM223A0PJW6 202 aa10.27□□□□□ -0.77
VRK3-217ENST00000599538 H3BRM9 83 aa10.27□□□□□ -0.77
VRK3-217ENST00000599538 HERVK_113P61574 105 aa10.27□□□□□ -0.77
VRK3-217ENST00000599538 RPL36AP83881 106 aaKnown RBP10.27□□□□□ -0.77
VRK3-217ENST00000599538 UBE2V1Q13404 147 aa10.27□□□□□ -0.77
VRK3-217ENST00000599538 RPL36ALQ969Q0 106 aaKnown RBP10.27□□□□□ -0.77
VRK3-217ENST00000599538 PTTG1IPP53801 180 aa10.27□□□□□ -0.77
VRK3-217ENST00000599538 UBE2D3P61077 147 aa10.27□□□□□ -0.77
VRK3-217ENST00000599538 UBE2D2P62837 147 aa10.27□□□□□ -0.77
VRK3-217ENST00000599538 HIST1H4GQ99525 98 aa10.27□□□□□ -0.77
VRK3-217ENST00000599538 TRBV10-1A0A0K0K1A3 114 aa10.26□□□□□ -0.77
VRK3-217ENST00000599538 SPANXA1Q9NS26 97 aa10.26□□□□□ -0.77
VRK3-217ENST00000599538 X6R8D5 127 aa10.26□□□□□ -0.77
VRK3-217ENST00000599538 H3BUT2 72 aa10.25□□□□□ -0.77
VRK3-217ENST00000599538 MRPS36P82909 103 aaKnown RBP10.25□□□□□ -0.77
VRK3-217ENST00000599538 NHP2Q9NX24 153 aaKnown RBP10.25□□□□□ -0.77
VRK3-217ENST00000599538 C9orf118A6NHY6 69 aa10.25□□□□□ -0.77
VRK3-217ENST00000599538 J3QQQ9 107 aa10.25□□□□□ -0.77
VRK3-217ENST00000599538 SCGB1D4Q6XE38 83 aa10.25□□□□□ -0.77
VRK3-217ENST00000599538 DEFB130BP0DP73 79 aa10.24□□□□□ -0.77
VRK3-217ENST00000599538 DEFB130AP0DP74 79 aa10.24□□□□□ -0.77
VRK3-217ENST00000599538 FHL2Q14192 279 aa10.24□□□□□ -0.77
VRK3-217ENST00000599538 TRGV4A0A0C4DH28 118 aa10.24□□□□□ -0.77
Retrieved 100 of 20,778 RNA–protein pairs in 75.7 ms