RNA–Protein interactions for RNA: ENST00000597649.5

SHKBP1-215, Transcript of SH3KBP1 binding protein 1, human

TSL 5

Gene SHKBP1, Length 781 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SHKBP1-215	ENST00000597649	TRBV10-1	A0A0K0K1A3	114 aa		10.91	□□□□□ -0.66
SHKBP1-215	ENST00000597649	GAGE12J	A6NER3	117 aa		10.91	□□□□□ -0.66
SHKBP1-215	ENST00000597649	PLA2G1B	P04054	148 aa	Known RBP	10.91	□□□□□ -0.66
SHKBP1-215	ENST00000597649	RPL36A	P83881	106 aa	Known RBP	10.91	□□□□□ -0.66
SHKBP1-215	ENST00000597649	GAGE1	Q13065	139 aa		10.91	□□□□□ -0.66
SHKBP1-215	ENST00000597649	GAGE4	Q13068	117 aa		10.91	□□□□□ -0.66
SHKBP1-215	ENST00000597649	GAGE5	Q13069	117 aa		10.91	□□□□□ -0.66
SHKBP1-215	ENST00000597649	GAGE13	Q4V321	117 aa		10.91	□□□□□ -0.66
SHKBP1-215	ENST00000597649	SUMO4	Q6EEV6	95 aa		10.91	□□□□□ -0.66
SHKBP1-215	ENST00000597649	SH2D6	Q7Z4S9	175 aa		10.91	□□□□□ -0.66
SHKBP1-215	ENST00000597649	RPL36AL	Q969Q0	106 aa	Known RBP	10.91	□□□□□ -0.66
SHKBP1-215	ENST00000597649		A0A1B0GXF2	115 aa		10.9	□□□□□ -0.66
SHKBP1-215	ENST00000597649	DEFB104A	Q8WTQ1	72 aa		10.9	□□□□□ -0.66
SHKBP1-215	ENST00000597649	RASL11A	Q6T310	242 aa		10.89	□□□□□ -0.67
SHKBP1-215	ENST00000597649	AMN1	Q8IY45	258 aa		10.89	□□□□□ -0.67
SHKBP1-215	ENST00000597649		M0QY20	66 aa		10.88	□□□□□ -0.67
SHKBP1-215	ENST00000597649	IGHV3-30	P01768	117 aa		10.88	□□□□□ -0.67
SHKBP1-215	ENST00000597649	IGHV3-33	P01772	117 aa		10.88	□□□□□ -0.67
SHKBP1-215	ENST00000597649	IGHV3-30-3	P0DP02	117 aa		10.88	□□□□□ -0.67
SHKBP1-215	ENST00000597649	IGHV3-30-5	P0DP03	117 aa		10.88	□□□□□ -0.67
SHKBP1-215	ENST00000597649	RAB4A	P20338	218 aa		10.88	□□□□□ -0.67
SHKBP1-215	ENST00000597649	KRTAP10-4	P60372	401 aa	Predicted RBP	10.88	□□□□□ -0.67
SHKBP1-215	ENST00000597649	SERTAD4-AS1	Q5TG53	156 aa		10.88	□□□□□ -0.67
SHKBP1-215	ENST00000597649	ATRAID	Q6UW56	229 aa		10.88	□□□□□ -0.67
SHKBP1-215	ENST00000597649	SREK1IP1	Q8N9Q2	155 aa	Predicted RBP	10.88	□□□□□ -0.67
SHKBP1-215	ENST00000597649	ATP6V0E2	Q8NHE4	81 aa		10.88	□□□□□ -0.67
SHKBP1-215	ENST00000597649	TRBV7-3	A0A075B6L6	115 aa		10.87	□□□□□ -0.67
SHKBP1-215	ENST00000597649	TRAV26-2	A0A0B4J265	109 aa		10.87	□□□□□ -0.67
SHKBP1-215	ENST00000597649	FAM104B	Q5XKR9	115 aa		10.87	□□□□□ -0.67
SHKBP1-215	ENST00000597649	NEXN-AS1	Q8NBZ9	246 aa		10.87	□□□□□ -0.67
SHKBP1-215	ENST00000597649	MRAP2	Q96G30	205 aa		10.87	□□□□□ -0.67
SHKBP1-215	ENST00000597649	DNAJC30	Q96LL9	226 aa		10.87	□□□□□ -0.67
SHKBP1-215	ENST00000597649	GATD1	Q8NB37	220 aa		10.86	□□□□□ -0.67
SHKBP1-215	ENST00000597649	RNF185	Q96GF1	192 aa		10.86	□□□□□ -0.67
SHKBP1-215	ENST00000597649	NIT2	Q9NQR4	276 aa		10.86	□□□□□ -0.67
SHKBP1-215	ENST00000597649	SMCO4	Q9NRQ5	59 aa		10.86	□□□□□ -0.67
SHKBP1-215	ENST00000597649		Q9UF83	564 aa		10.86	□□□□□ -0.67
SHKBP1-215	ENST00000597649	TRAV8-6	A0A0B4J262	113 aa		10.85	□□□□□ -0.67
SHKBP1-215	ENST00000597649	LECT2	O14960	151 aa		10.85	□□□□□ -0.67
SHKBP1-215	ENST00000597649	COX19	Q49B96	90 aa		10.85	□□□□□ -0.67
SHKBP1-215	ENST00000597649	LINC01620	Q4KN68	170 aa		10.85	□□□□□ -0.67
SHKBP1-215	ENST00000597649	OR10J3	Q5JRS4	329 aa		10.85	□□□□□ -0.67
SHKBP1-215	ENST00000597649		Q8N3U1	123 aa		10.85	□□□□□ -0.67
SHKBP1-215	ENST00000597649	PPP1R17	O96001	155 aa		10.84	□□□□□ -0.67
SHKBP1-215	ENST00000597649	CKS2	P33552	79 aa		10.84	□□□□□ -0.67
SHKBP1-215	ENST00000597649	MRPL51	Q4U2R6	128 aa	Known RBP	10.84	□□□□□ -0.67
SHKBP1-215	ENST00000597649	UBE2D3	P61077	147 aa		10.83	□□□□□ -0.68
SHKBP1-215	ENST00000597649	UBE2D2	P62837	147 aa		10.83	□□□□□ -0.68
SHKBP1-215	ENST00000597649	ELOB	Q15370	118 aa		10.83	□□□□□ -0.68
SHKBP1-215	ENST00000597649	LELP1	Q5T871	98 aa		10.83	□□□□□ -0.68
SHKBP1-215	ENST00000597649	SCX	Q7RTU7	201 aa		10.83	□□□□□ -0.68
SHKBP1-215	ENST00000597649	GTSF1L	Q9H1H1	148 aa		10.83	□□□□□ -0.68
SHKBP1-215	ENST00000597649	RNF213	Q63HN8	5207 aa		10.82	□□□□□ -0.68
SHKBP1-215	ENST00000597649	TGIF2-C20orf24	A0A0A6YYL0	155 aa		10.82	□□□□□ -0.68
SHKBP1-215	ENST00000597649	SMKR1	H3BMG3	65 aa		10.82	□□□□□ -0.68
SHKBP1-215	ENST00000597649	NCR2	O95944	276 aa		10.82	□□□□□ -0.68
SHKBP1-215	ENST00000597649	LINC00694	P0DN24	101 aa		10.82	□□□□□ -0.68
SHKBP1-215	ENST00000597649	DAZ4	Q86SG3	579 aa	Known RBP	10.82	□□□□□ -0.68
SHKBP1-215	ENST00000597649	CBLN2	Q8IUK8	224 aa		10.82	□□□□□ -0.68
SHKBP1-215	ENST00000597649	RPL39L	Q96EH5	51 aa	Known RBP	10.82	□□□□□ -0.68
SHKBP1-215	ENST00000597649	ST20	Q9HBF5	79 aa		10.82	□□□□□ -0.68
SHKBP1-215	ENST00000597649	DAZ3	Q9NR90	486 aa	Known RBP	10.82	□□□□□ -0.68
SHKBP1-215	ENST00000597649	IGLV2-33	A0A075B6J2	118 aa	Predicted RBP	10.81	□□□□□ -0.68
SHKBP1-215	ENST00000597649	HLA-DQA1	P01909	254 aa		10.81	□□□□□ -0.68
SHKBP1-215	ENST00000597649	PPBP	P02775	128 aa		10.81	□□□□□ -0.68
SHKBP1-215	ENST00000597649	S100A1	P23297	94 aa		10.81	□□□□□ -0.68
SHKBP1-215	ENST00000597649	LAGE3	Q14657	143 aa		10.81	□□□□□ -0.68
SHKBP1-215	ENST00000597649	TMEM136	Q6ZRR5	245 aa		10.81	□□□□□ -0.68
SHKBP1-215	ENST00000597649	TM2D2	Q9BX73	214 aa		10.81	□□□□□ -0.68
SHKBP1-215	ENST00000597649	GNB1L	Q9BYB4	327 aa		10.81	□□□□□ -0.68
SHKBP1-215	ENST00000597649	TRBV24-1	A0A075B6N3	115 aa		10.8	□□□□□ -0.68
SHKBP1-215	ENST00000597649		D6R8Y8	96 aa		10.8	□□□□□ -0.68
SHKBP1-215	ENST00000597649	ATP6V1G1	O75348	118 aa		10.8	□□□□□ -0.68
SHKBP1-215	ENST00000597649	APCS	P02743	223 aa		10.8	□□□□□ -0.68
SHKBP1-215	ENST00000597649	ORMDL3	Q8N138	153 aa		10.8	□□□□□ -0.68
SHKBP1-215	ENST00000597649	GAS8-AS1	O95177	125 aa		10.79	□□□□□ -0.68
SHKBP1-215	ENST00000597649	OXT	P01178	125 aa		10.79	□□□□□ -0.68
SHKBP1-215	ENST00000597649	MT-ND6	P03923	174 aa		10.79	□□□□□ -0.68
SHKBP1-215	ENST00000597649	RPS10	P46783	165 aa	Known RBP	10.79	□□□□□ -0.68
SHKBP1-215	ENST00000597649	TMEM97	Q5BJF2	176 aa		10.79	□□□□□ -0.68
SHKBP1-215	ENST00000597649	BAALC	Q8WXS3	180 aa		10.79	□□□□□ -0.68
SHKBP1-215	ENST00000597649	TRBV6-5	A0A0K0K1A5	114 aa		10.78	□□□□□ -0.68
SHKBP1-215	ENST00000597649	SDHAF1	A6NFY7	115 aa		10.78	□□□□□ -0.68
SHKBP1-215	ENST00000597649	PMCH	P20382	165 aa		10.78	□□□□□ -0.68
SHKBP1-215	ENST00000597649	PRELID3A	Q96N28	172 aa		10.78	□□□□□ -0.68
SHKBP1-215	ENST00000597649	CHAC1	Q9BUX1	264 aa		10.78	□□□□□ -0.68
SHKBP1-215	ENST00000597649	PLA2G2D	Q9UNK4	145 aa		10.78	□□□□□ -0.68
SHKBP1-215	ENST00000597649	TNFRSF6B	O95407	300 aa		10.77	□□□□□ -0.69
SHKBP1-215	ENST00000597649	FABP9	Q0Z7S8	132 aa		10.77	□□□□□ -0.69
SHKBP1-215	ENST00000597649	COTL1	Q14019	142 aa		10.77	□□□□□ -0.69
SHKBP1-215	ENST00000597649	NRAC	Q8N912	160 aa		10.77	□□□□□ -0.69
SHKBP1-215	ENST00000597649	MRPL18	Q9H0U6	180 aa	Known RBP	10.77	□□□□□ -0.69
SHKBP1-215	ENST00000597649	TRAPPC1	Q9Y5R8	145 aa		10.77	□□□□□ -0.69
SHKBP1-215	ENST00000597649		I3L3M4	83 aa		10.76	□□□□□ -0.69
SHKBP1-215	ENST00000597649	PHOX2A	O14813	284 aa		10.76	□□□□□ -0.69
SHKBP1-215	ENST00000597649	SUMO2	P61956	95 aa	Known RBP	10.76	□□□□□ -0.69
SHKBP1-215	ENST00000597649	KIAA1644	Q3SXP7	199 aa		10.76	□□□□□ -0.69
SHKBP1-215	ENST00000597649	CIRBP-AS1	Q8TBR5	109 aa		10.76	□□□□□ -0.69
SHKBP1-215	ENST00000597649	C20orf78	Q9BR46	151 aa		10.76	□□□□□ -0.69
SHKBP1-215	ENST00000597649	TRBV6-8	A0A0A6YYG3	113 aa		10.75	□□□□□ -0.69

Retrieved 100 of 20,778 RNA–protein pairs in 57.7 ms