RNA–Protein interactions for RNA: ENST00000597136.1

TRIM28-207, Transcript of tripartite motif containing 28, humanhuman

TSL 2

Gene TRIM28, Length 1,552 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-207ENST00000597136 IGLV2-18A0A075B6J9 118 aa10.32□□□□□ -0.76
TRIM28-207ENST00000597136 IGHV3-38A0A0C4DH36 116 aa10.32□□□□□ -0.76
TRIM28-207ENST00000597136 IFI27P40305 119 aaPredicted RBP10.32□□□□□ -0.76
TRIM28-207ENST00000597136 Q0VG73 95 aa10.32□□□□□ -0.76
TRIM28-207ENST00000597136 SH2D6Q7Z4S9 175 aa10.32□□□□□ -0.76
TRIM28-207ENST00000597136 ATP6V0E2Q8NHE4 81 aa10.32□□□□□ -0.76
TRIM28-207ENST00000597136 I3L3M4 83 aa10.31□□□□□ -0.76
TRIM28-207ENST00000597136 PMCHP20382 165 aa10.31□□□□□ -0.76
TRIM28-207ENST00000597136 Q8N8P6 123 aa10.31□□□□□ -0.76
TRIM28-207ENST00000597136 PRSS3P2Q8NHM4 247 aa10.31□□□□□ -0.76
TRIM28-207ENST00000597136 NXT2Q9NPJ8 142 aaKnown RBP10.31□□□□□ -0.76
TRIM28-207ENST00000597136 CCL18P55774 89 aa10.31□□□□□ -0.76
TRIM28-207ENST00000597136 RAB5BP61020 215 aa10.31□□□□□ -0.76
TRIM28-207ENST00000597136 LYPD5Q6UWN5 251 aa10.31□□□□□ -0.76
TRIM28-207ENST00000597136 DEFB104AQ8WTQ1 72 aa10.31□□□□□ -0.76
TRIM28-207ENST00000597136 TSHBP01222 138 aa10.3□□□□□ -0.76
TRIM28-207ENST00000597136 KIR2DL4Q99706 377 aa10.3□□□□□ -0.76
TRIM28-207ENST00000597136 GTSF1LQ9H1H1 148 aa10.3□□□□□ -0.76
TRIM28-207ENST00000597136 COTL1Q14019 142 aa10.29□□□□□ -0.76
TRIM28-207ENST00000597136 NIT1Q86X76 327 aa10.29□□□□□ -0.76
TRIM28-207ENST00000597136 BAGE3Q86Y29 109 aa10.29□□□□□ -0.76
TRIM28-207ENST00000597136 URB1-AS1Q96HZ7 61 aa10.29□□□□□ -0.76
TRIM28-207ENST00000597136 LINC01546A6NGU7 62 aa10.28□□□□□ -0.76
TRIM28-207ENST00000597136 M0R2N4 97 aa10.28□□□□□ -0.76
TRIM28-207ENST00000597136 TCAPO15273 167 aa10.28□□□□□ -0.76
TRIM28-207ENST00000597136 LINC00614P0C842 121 aa10.28□□□□□ -0.76
TRIM28-207ENST00000597136 NTM-AS1Q6ZSK4 140 aa10.28□□□□□ -0.76
TRIM28-207ENST00000597136 FA2HQ7L5A8 372 aa10.28□□□□□ -0.76
TRIM28-207ENST00000597136 FRAS1Q86XX4 4008 aa10.27□□□□□ -0.77
TRIM28-207ENST00000597136 FCER1GP30273 86 aa10.26□□□□□ -0.77
TRIM28-207ENST00000597136 TMEM97Q5BJF2 176 aa10.26□□□□□ -0.77
TRIM28-207ENST00000597136 AP5S1Q9NUS5 200 aa10.26□□□□□ -0.77
TRIM28-207ENST00000597136 TRBV6-8A0A0A6YYG3 113 aa10.26□□□□□ -0.77
TRIM28-207ENST00000597136 K7EMI3 77 aa10.26□□□□□ -0.77
TRIM28-207ENST00000597136 SERF1AO75920 110 aa10.26□□□□□ -0.77
TRIM28-207ENST00000597136 TIRAPP58753 221 aa10.26□□□□□ -0.77
TRIM28-207ENST00000597136 LINC00310P59036 64 aa10.26□□□□□ -0.77
TRIM28-207ENST00000597136 LAGE3Q14657 143 aa10.26□□□□□ -0.77
TRIM28-207ENST00000597136 RNASEKQ6P5S7 137 aaKnown RBP10.26□□□□□ -0.77
TRIM28-207ENST00000597136 TMA7Q9Y2S6 64 aaKnown RBP10.26□□□□□ -0.77
TRIM28-207ENST00000597136 MRPS16Q9Y3D3 137 aaKnown RBP10.26□□□□□ -0.77
TRIM28-207ENST00000597136 NDUFA6P56556 154 aa10.25□□□□□ -0.77
TRIM28-207ENST00000597136 COA6Q5JTJ3 125 aaKnown RBP10.25□□□□□ -0.77
TRIM28-207ENST00000597136 CHCHD1Q96BP2 118 aaKnown RBP10.25□□□□□ -0.77
TRIM28-207ENST00000597136 Q9H8V8 135 aa10.25□□□□□ -0.77
TRIM28-207ENST00000597136 NUPR1O60356 82 aa10.24□□□□□ -0.77
TRIM28-207ENST00000597136 AMTP48728 403 aa10.24□□□□□ -0.77
TRIM28-207ENST00000597136 ORMDL2Q53FV1 153 aa10.24□□□□□ -0.77
TRIM28-207ENST00000597136 CHCHD7Q9BUK0 85 aa10.24□□□□□ -0.77
TRIM28-207ENST00000597136 TRBV25-1A0A075B6N4 114 aa10.23□□□□□ -0.77
TRIM28-207ENST00000597136 IGHV1-24A0A0C4DH33 117 aa10.23□□□□□ -0.77
TRIM28-207ENST00000597136 ESDP10768 282 aa10.23□□□□□ -0.77
TRIM28-207ENST00000597136 UPK3BQ9BT76 320 aa10.23□□□□□ -0.77
TRIM28-207ENST00000597136 DNAH10Q8IVF4 4471 aa10.23□□□□□ -0.77
TRIM28-207ENST00000597136 LELP1Q5T871 98 aa10.22□□□□□ -0.77
TRIM28-207ENST00000597136 Q6ZR54 194 aa10.22□□□□□ -0.77
TRIM28-207ENST00000597136 TMEM243Q9BU79 118 aa10.22□□□□□ -0.77
TRIM28-207ENST00000597136 DNAH2Q9P225 4427 aa10.22□□□□□ -0.77
TRIM28-207ENST00000597136 WFDC10BQ8IUB3 73 aa10.22□□□□□ -0.77
TRIM28-207ENST00000597136 HSBP1O75506 76 aa10.21□□□□□ -0.78
TRIM28-207ENST00000597136 PMCHL1Q16048 86 aa10.21□□□□□ -0.78
TRIM28-207ENST00000597136 C20orf203Q8NBC4 194 aa10.21□□□□□ -0.78
TRIM28-207ENST00000597136 KRTAP1-5Q9BYS1 174 aa10.21□□□□□ -0.78
TRIM28-207ENST00000597136 IGKV2D-29A0A075B6S2 120 aaPredicted RBP10.2□□□□□ -0.78
TRIM28-207ENST00000597136 NBDYA0A0U1RRE5 68 aa10.2□□□□□ -0.78
TRIM28-207ENST00000597136 IGKV2-29A2NJV5 120 aaPredicted RBP10.2□□□□□ -0.78
TRIM28-207ENST00000597136 SIVA1O15304 175 aa10.2□□□□□ -0.78
TRIM28-207ENST00000597136 S100A6P06703 90 aa10.2□□□□□ -0.78
TRIM28-207ENST00000597136 BTF3P20290 206 aaKnown RBP10.2□□□□□ -0.78
TRIM28-207ENST00000597136 RPL39P62891 51 aaKnown RBP10.2□□□□□ -0.78
TRIM28-207ENST00000597136 CHCHD5Q9BSY4 110 aa10.2□□□□□ -0.78
TRIM28-207ENST00000597136 A0A096LNJ9 63 aa10.19□□□□□ -0.78
TRIM28-207ENST00000597136 FAM19A2Q8N3H0 131 aa10.19□□□□□ -0.78
TRIM28-207ENST00000597136 TRAV8-6A0A0B4J262 113 aa10.18□□□□□ -0.78
TRIM28-207ENST00000597136 G0S2P27469 103 aa10.18□□□□□ -0.78
TRIM28-207ENST00000597136 C2orf66Q6UXQ4 117 aa10.18□□□□□ -0.78
TRIM28-207ENST00000597136 TOMM6Q96B49 74 aa10.18□□□□□ -0.78
TRIM28-207ENST00000597136 CYSLTR1Q9Y271 337 aa10.18□□□□□ -0.78
TRIM28-207ENST00000597136 H7C423 109 aa10.18□□□□□ -0.78
TRIM28-207ENST00000597136 UBE2L6O14933 153 aa10.18□□□□□ -0.78
TRIM28-207ENST00000597136 HBDP02042 147 aa10.18□□□□□ -0.78
TRIM28-207ENST00000597136 GAGE6Q13070 117 aa10.18□□□□□ -0.78
TRIM28-207ENST00000597136 TMEM18Q96B42 140 aa10.18□□□□□ -0.78
TRIM28-207ENST00000597136 DNAH17Q9UFH2 4485 aa10.17□□□□□ -0.78
TRIM28-207ENST00000597136 SNRPEP62304 92 aaKnown RBP10.17□□□□□ -0.78
TRIM28-207ENST00000597136 C5orf52A6NGY3 159 aa10.16□□□□□ -0.78
TRIM28-207ENST00000597136 TMEM262E9PQX1 116 aa10.16□□□□□ -0.78
TRIM28-207ENST00000597136 FGF6P10767 208 aa10.16□□□□□ -0.78
TRIM28-207ENST00000597136 MRPL52Q86TS9 123 aaKnown RBP10.16□□□□□ -0.78
TRIM28-207ENST00000597136 Q8N3U1 123 aa10.16□□□□□ -0.78
TRIM28-207ENST00000597136 LINC01549A6NIU2 74 aa10.15□□□□□ -0.78
TRIM28-207ENST00000597136 RTL8CO15255 209 aa10.15□□□□□ -0.78
TRIM28-207ENST00000597136 PDZD11Q5EBL8 140 aa10.15□□□□□ -0.78
TRIM28-207ENST00000597136 UBE2D4Q9Y2X8 147 aa10.15□□□□□ -0.78
TRIM28-207ENST00000597136 PKIAP61925 76 aa10.14□□□□□ -0.79
TRIM28-207ENST00000597136 AMMECR1LQ6DCA0 310 aa10.14□□□□□ -0.79
TRIM28-207ENST00000597136 HIST3H2BBQ8N257 126 aa10.14□□□□□ -0.79
TRIM28-207ENST00000597136 SCGB3A1Q96QR1 104 aa10.14□□□□□ -0.79
TRIM28-207ENST00000597136 TIMM21Q9BVV7 248 aa10.14□□□□□ -0.79
TRIM28-207ENST00000597136 PYGO1Q9Y3Y4 419 aa10.14□□□□□ -0.79
Retrieved 100 of 20,778 RNA–protein pairs in 105.7 ms