RNA–Protein interactions for RNA: ENST00000581021.5

SS18-218, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 4

Gene SS18, Length 588 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-218ENST00000581021 KRTAP10-1P60331 282 aa13.29□□□□□ -0.28
SS18-218ENST00000581021 RIGQ13278 110 aa13.29□□□□□ -0.28
SS18-218ENST00000581021 CLPSL2Q6UWE3 100 aa13.29□□□□□ -0.28
SS18-218ENST00000581021 BAALCQ8WXS3 180 aa13.29□□□□□ -0.28
SS18-218ENST00000581021 TRBV6-5A0A0K0K1A5 114 aa13.28□□□□□ -0.28
SS18-218ENST00000581021 SDHAF1A6NFY7 115 aa13.28□□□□□ -0.28
SS18-218ENST00000581021 SMKR1H3BMG3 65 aa13.28□□□□□ -0.28
SS18-218ENST00000581021 NCR2O95944 276 aa13.28□□□□□ -0.28
SS18-218ENST00000581021 PKIAP61925 76 aa13.28□□□□□ -0.28
SS18-218ENST00000581021 COTL1Q14019 142 aa13.28□□□□□ -0.28
SS18-218ENST00000581021 C20orf203Q8NBC4 194 aa13.28□□□□□ -0.28
SS18-218ENST00000581021 PRR34Q9NV39 138 aa13.28□□□□□ -0.28
SS18-218ENST00000581021 IGLV4-60A0A075B6I1 120 aa13.27□□□□□ -0.29
SS18-218ENST00000581021 AMTP48728 403 aa13.27□□□□□ -0.29
SS18-218ENST00000581021 LINC00269Q8N2A0 174 aa13.27□□□□□ -0.29
SS18-218ENST00000581021 Q0VG73 95 aa13.26□□□□□ -0.29
SS18-218ENST00000581021 RMI2Q96E14 147 aa13.26□□□□□ -0.29
SS18-218ENST00000581021 A0A1B0GXF2 115 aa13.25□□□□□ -0.29
SS18-218ENST00000581021 CRPP02741 224 aa13.25□□□□□ -0.29
SS18-218ENST00000581021 ADCYAP1P18509 176 aa13.25□□□□□ -0.29
SS18-218ENST00000581021 CAMPP49913 170 aa13.25□□□□□ -0.29
SS18-218ENST00000581021 KRTAP26-1Q6PEX3 210 aa13.25□□□□□ -0.29
SS18-218ENST00000581021 NRACQ8N912 160 aa13.25□□□□□ -0.29
SS18-218ENST00000581021 MRAP2Q96G30 205 aa13.25□□□□□ -0.29
SS18-218ENST00000581021 TMEM70Q9BUB7 260 aa13.25□□□□□ -0.29
SS18-218ENST00000581021 COX11Q9Y6N1 276 aa13.25□□□□□ -0.29
SS18-218ENST00000581021 DNAH8Q96JB1 4490 aa13.25□□□□□ -0.29
SS18-218ENST00000581021 IGLV5-52A0A0A0MRZ9 124 aa13.24□□□□□ -0.29
SS18-218ENST00000581021 TSHBP01222 138 aa13.24□□□□□ -0.29
SS18-218ENST00000581021 MRPL54Q6P161 138 aaKnown RBP13.24□□□□□ -0.29
SS18-218ENST00000581021 A0A1B0GUV1 79 aa13.23□□□□□ -0.29
SS18-218ENST00000581021 POLR2KP53803 58 aaKnown RBP13.23□□□□□ -0.29
SS18-218ENST00000581021 MRPL51Q4U2R6 128 aaKnown RBP13.23□□□□□ -0.29
SS18-218ENST00000581021 FAM104BQ5XKR9 115 aa13.23□□□□□ -0.29
SS18-218ENST00000581021 NTN5Q8WTR8 489 aaPredicted RBP13.23□□□□□ -0.29
SS18-218ENST00000581021 C1orf43Q9BWL3 253 aa13.23□□□□□ -0.29
SS18-218ENST00000581021 KRTAP4-5Q9BYR2 181 aa13.23□□□□□ -0.29
SS18-218ENST00000581021 ST20Q9HBF5 79 aa13.23□□□□□ -0.29
SS18-218ENST00000581021 IGKV2D-29A0A075B6S2 120 aaPredicted RBP13.22□□□□□ -0.29
SS18-218ENST00000581021 IGKV2-29A2NJV5 120 aaPredicted RBP13.22□□□□□ -0.29
SS18-218ENST00000581021 MIAQ16674 131 aa13.22□□□□□ -0.29
SS18-218ENST00000581021 TMEM242Q9NWH2 141 aa13.22□□□□□ -0.29
SS18-218ENST00000581021 ABCA13Q86UQ4 5058 aa13.21□□□□□ -0.29
SS18-218ENST00000581021 I3L3M4 83 aa13.21□□□□□ -0.29
SS18-218ENST00000581021 APCSP02743 223 aa13.21□□□□□ -0.29
SS18-218ENST00000581021 GCSHP23434 173 aa13.21□□□□□ -0.29
SS18-218ENST00000581021 REG3AQ06141 175 aa13.21□□□□□ -0.29
SS18-218ENST00000581021 PNRC1Q12796 327 aaPredicted RBP13.21□□□□□ -0.29
SS18-218ENST00000581021 IGLV2-33A0A075B6J2 118 aaPredicted RBP13.2□□□□□ -0.3
SS18-218ENST00000581021 TRBV27A0A0K0K1C4 114 aa13.2□□□□□ -0.3
SS18-218ENST00000581021 UBE2L6O14933 153 aa13.2□□□□□ -0.3
SS18-218ENST00000581021 HBBP68871 147 aa13.2□□□□□ -0.3
SS18-218ENST00000581021 PCLOQ9Y6V0 5065 aa13.2□□□□□ -0.3
SS18-218ENST00000581021 IGLV10-54A0A075B6I4 117 aa13.19□□□□□ -0.3
SS18-218ENST00000581021 A0A1B0GW15 77 aa13.19□□□□□ -0.3
SS18-218ENST00000581021 ESDP10768 282 aa13.19□□□□□ -0.3
SS18-218ENST00000581021 PMCHP20382 165 aa13.19□□□□□ -0.3
SS18-218ENST00000581021 XGP55808 180 aa13.19□□□□□ -0.3
SS18-218ENST00000581021 FAT1Q14517 4588 aa13.18□□□□□ -0.3
SS18-218ENST00000581021 PPP1R2P9O14990 202 aa13.18□□□□□ -0.3
SS18-218ENST00000581021 HLA-DQA1P01909 254 aa13.18□□□□□ -0.3
SS18-218ENST00000581021 UQCC3Q6UW78 93 aa13.18□□□□□ -0.3
SS18-218ENST00000581021 TMEM218A2RU14 115 aa13.17□□□□□ -0.3
SS18-218ENST00000581021 FGF6P10767 208 aa13.17□□□□□ -0.3
SS18-218ENST00000581021 MT-ND4LP03901 98 aa13.16□□□□□ -0.3
SS18-218ENST00000581021 SUMO2P61956 95 aaKnown RBP13.16□□□□□ -0.3
SS18-218ENST00000581021 HAMPP81172 84 aa13.16□□□□□ -0.3
SS18-218ENST00000581021 LINC01620Q4KN68 170 aa13.16□□□□□ -0.3
SS18-218ENST00000581021 COMMD7Q86VX2 200 aa13.16□□□□□ -0.3
SS18-218ENST00000581021 USP17L23D6RBM5 183 aa13.15□□□□□ -0.3
SS18-218ENST00000581021 ATP5L2Q7Z4Y8 100 aa13.15□□□□□ -0.3
SS18-218ENST00000581021 ANAPC16Q96DE5 110 aa13.15□□□□□ -0.3
SS18-218ENST00000581021 FAM30AQ9NZY2 134 aa13.15□□□□□ -0.3
SS18-218ENST00000581021 D6R8Y8 96 aa13.14□□□□□ -0.31
SS18-218ENST00000581021 H7C423 109 aa13.14□□□□□ -0.31
SS18-218ENST00000581021 TRBV24-1A0A075B6N3 115 aa13.13□□□□□ -0.31
SS18-218ENST00000581021 VCYO14598 125 aa13.13□□□□□ -0.31
SS18-218ENST00000581021 NPYP01303 97 aa13.13□□□□□ -0.31
SS18-218ENST00000581021 S100A8P05109 93 aa13.13□□□□□ -0.31
SS18-218ENST00000581021 CKS2P33552 79 aa13.13□□□□□ -0.31
SS18-218ENST00000581021 AMMECR1LQ6DCA0 310 aa13.13□□□□□ -0.31
SS18-218ENST00000581021 RNASEKQ6P5S7 137 aaKnown RBP13.13□□□□□ -0.31
SS18-218ENST00000581021 LINC00862A6NCI5 91 aa13.12□□□□□ -0.31
SS18-218ENST00000581021 F8W036 122 aa13.12□□□□□ -0.31
SS18-218ENST00000581021 TNFRSF6BO95407 300 aa13.12□□□□□ -0.31
SS18-218ENST00000581021 PPP1R17O96001 155 aa13.12□□□□□ -0.31
SS18-218ENST00000581021 TRAV8-4A0A0B4J246 113 aa13.11□□□□□ -0.31
SS18-218ENST00000581021 IGKV3OR2-268A0A0C4DH90 116 aa13.11□□□□□ -0.31
SS18-218ENST00000581021 PRSS1P07477 247 aa13.11□□□□□ -0.31
SS18-218ENST00000581021 Q8N1X5 172 aa13.11□□□□□ -0.31
SS18-218ENST00000581021 C7orf77A4D0Y5 90 aa13.1□□□□□ -0.31
SS18-218ENST00000581021 C20orf78Q9BR46 151 aa13.1□□□□□ -0.31
SS18-218ENST00000581021 ZNF25P17030 456 aaPredicted RBP13.09□□□□□ -0.31
SS18-218ENST00000581021 RPL32P62910 135 aaKnown RBP13.09□□□□□ -0.31
SS18-218ENST00000581021 MRPL52Q86TS9 123 aaKnown RBP13.09□□□□□ -0.31
SS18-218ENST00000581021 SEC11CQ9BY50 192 aa13.09□□□□□ -0.31
SS18-218ENST00000581021 FCER1GP30273 86 aa13.08□□□□□ -0.32
SS18-218ENST00000581021 Q6ZSA8 131 aa13.08□□□□□ -0.32
SS18-218ENST00000581021 SMIM2Q9BVW6 85 aa13.08□□□□□ -0.32
SS18-218ENST00000581021 GAGE12HA6NDE8 117 aa13.07□□□□□ -0.32
Retrieved 100 of 20,778 RNA–protein pairs in 82.3 ms