RNA–Protein interactions for RNA: ENST00000571805.5

VPS53-211, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 1 (best) BASIC

Gene VPS53, Length 2,356 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-211ENST00000571805 KHDC1LQ5JSQ8 128 aa16.56■□□□□ 0.24
VPS53-211ENST00000571805 CEMP1Q6PRD7 247 aaPredicted RBP16.56■□□□□ 0.24
VPS53-211ENST00000571805 CRYBA4P53673 196 aa16.56■□□□□ 0.24
VPS53-211ENST00000571805 DYNLRB2Q8TF09 96 aa16.56■□□□□ 0.24
VPS53-211ENST00000571805 ZNF469Q96JG9 3925 aaPredicted RBP16.55■□□□□ 0.24
VPS53-211ENST00000571805 SMCPP49901 116 aaPredicted RBP16.55■□□□□ 0.24
VPS53-211ENST00000571805 MRPS36P82909 103 aaKnown RBP16.55■□□□□ 0.24
VPS53-211ENST00000571805 KRTAP1-3Q8IUG1 177 aa16.55■□□□□ 0.24
VPS53-211ENST00000571805 C10orf126Q8N4M7 172 aa16.55■□□□□ 0.24
VPS53-211ENST00000571805 LINC01587Q99440 93 aa16.55■□□□□ 0.24
VPS53-211ENST00000571805 CHCHD7Q9BUK0 85 aa16.55■□□□□ 0.24
VPS53-211ENST00000571805 PSMB2P49721 201 aa16.54■□□□□ 0.24
VPS53-211ENST00000571805 RAX2Q96IS3 184 aa16.53■□□□□ 0.24
VPS53-211ENST00000571805 BEAN1Q3B7T3 259 aa16.53■□□□□ 0.24
VPS53-211ENST00000571805 PRO1854Q9UHT4 67 aa16.53■□□□□ 0.24
VPS53-211ENST00000571805 J3QR89 54 aa16.52■□□□□ 0.24
VPS53-211ENST00000571805 SPXQ9BT56 116 aa16.52■□□□□ 0.24
VPS53-211ENST00000571805 EIF4EBP3O60516 100 aaPredicted RBP16.52■□□□□ 0.23
VPS53-211ENST00000571805 A4D1N5 150 aa16.51■□□□□ 0.23
VPS53-211ENST00000571805 IGHV3-30-3P0DP02 117 aa16.51■□□□□ 0.23
VPS53-211ENST00000571805 INSP01308 110 aa16.51■□□□□ 0.23
VPS53-211ENST00000571805 IGHV3-53P01767 116 aa16.51■□□□□ 0.23
VPS53-211ENST00000571805 INSL3P51460 131 aa16.51■□□□□ 0.23
VPS53-211ENST00000571805 Q6ZSV7 163 aa16.51■□□□□ 0.23
VPS53-211ENST00000571805 UBE2D4Q9Y2X8 147 aa16.51■□□□□ 0.23
VPS53-211ENST00000571805 TSSC4Q9Y5U2 329 aaPredicted RBP16.51■□□□□ 0.23
VPS53-211ENST00000571805 RNASE13Q5GAN3 156 aaKnown RBP16.5■□□□□ 0.23
VPS53-211ENST00000571805 LYRM7Q5U5X0 104 aa16.5■□□□□ 0.23
VPS53-211ENST00000571805 APCP25054 2843 aa16.5■□□□□ 0.23
VPS53-211ENST00000571805 A0A0J9YXY3 114 aa16.5■□□□□ 0.23
VPS53-211ENST00000571805 MUSTN1Q8IVN3 82 aa16.5■□□□□ 0.23
VPS53-211ENST00000571805 RS1O15537 224 aa16.49■□□□□ 0.23
VPS53-211ENST00000571805 TCL1BO95988 128 aa16.49■□□□□ 0.23
VPS53-211ENST00000571805 TMEM86BQ8N661 226 aa16.49■□□□□ 0.23
VPS53-211ENST00000571805 TIMM21Q9BVV7 248 aa16.49■□□□□ 0.23
VPS53-211ENST00000571805 CHD6Q8TD26 2715 aa16.49■□□□□ 0.23
VPS53-211ENST00000571805 DNAJC30Q96LL9 226 aa16.49■□□□□ 0.23
VPS53-211ENST00000571805 CLUHP3Q96NS8 147 aa16.49■□□□□ 0.23
VPS53-211ENST00000571805 SPANXA1Q9NS26 97 aa16.49■□□□□ 0.23
VPS53-211ENST00000571805 GAGE12HA6NDE8 117 aa16.48■□□□□ 0.23
VPS53-211ENST00000571805 ODF3L2Q3SX64 289 aa16.48■□□□□ 0.23
VPS53-211ENST00000571805 TMEM263Q8WUH6 116 aaKnown RBP16.48■□□□□ 0.23
VPS53-211ENST00000571805 IGKV2D-29A0A075B6S2 120 aaPredicted RBP16.47■□□□□ 0.23
VPS53-211ENST00000571805 TRAV8-3A0A0A6YYJ7 113 aa16.47■□□□□ 0.23
VPS53-211ENST00000571805 IGKV2-29A2NJV5 120 aaPredicted RBP16.47■□□□□ 0.23
VPS53-211ENST00000571805 TMEM238C9JI98 176 aa16.47■□□□□ 0.23
VPS53-211ENST00000571805 AZU1P20160 251 aa16.47■□□□□ 0.23
VPS53-211ENST00000571805 TLN2Q9Y4G6 2542 aa16.47■□□□□ 0.23
VPS53-211ENST00000571805 TRBV20-1A0A075B6N2 111 aa16.46■□□□□ 0.23
VPS53-211ENST00000571805 TINCRA0A1B0GVN0 87 aa16.46■□□□□ 0.23
VPS53-211ENST00000571805 ATP6V0E2Q8NHE4 81 aa16.46■□□□□ 0.23
VPS53-211ENST00000571805 LITAFQ99732 161 aa16.46■□□□□ 0.23
VPS53-211ENST00000571805 SPATA25Q9BR10 227 aa16.46■□□□□ 0.23
VPS53-211ENST00000571805 IGHV3-38A0A0C4DH36 116 aa16.45■□□□□ 0.22
VPS53-211ENST00000571805 IGHV1-58A0A0C4DH39 117 aa16.45■□□□□ 0.22
VPS53-211ENST00000571805 IGHV3-33P01772 117 aa16.45■□□□□ 0.22
VPS53-211ENST00000571805 C1QTNF4Q9BXJ3 329 aa16.45■□□□□ 0.22
VPS53-211ENST00000571805 XCL2Q9UBD3 114 aa16.45■□□□□ 0.22
VPS53-211ENST00000571805 EPG5Q9HCE0 2579 aa16.45■□□□□ 0.22
VPS53-211ENST00000571805 A0A0B4J2C4 111 aa16.45■□□□□ 0.22
VPS53-211ENST00000571805 ADARB2-AS1A8MUL3 147 aa16.45■□□□□ 0.22
VPS53-211ENST00000571805 FOXI1Q12951 378 aa16.45■□□□□ 0.22
VPS53-211ENST00000571805 ZNF418Q8TF45 676 aaPredicted RBP16.45■□□□□ 0.22
VPS53-211ENST00000571805 ITPR3Q14573 2671 aa16.44■□□□□ 0.22
VPS53-211ENST00000571805 Q6ZUT4 128 aa16.44■□□□□ 0.22
VPS53-211ENST00000571805 SIGMAR1Q99720 223 aa16.44■□□□□ 0.22
VPS53-211ENST00000571805 TRAV25A0A0B4J276 109 aa16.43■□□□□ 0.22
VPS53-211ENST00000571805 C1orf158Q8N1D5 194 aa16.43■□□□□ 0.22
VPS53-211ENST00000571805 DNAJC9-AS1A6NH13 148 aa16.43■□□□□ 0.22
VPS53-211ENST00000571805 FHL3Q13643 280 aa16.43■□□□□ 0.22
VPS53-211ENST00000571805 SBSPONQ8IVN8 264 aa16.43■□□□□ 0.22
VPS53-211ENST00000571805 VSIG2Q96IQ7 327 aa16.43■□□□□ 0.22
VPS53-211ENST00000571805 GTSF1LQ9H1H1 148 aa16.43■□□□□ 0.22
VPS53-211ENST00000571805 IL17DQ8TAD2 202 aa16.42■□□□□ 0.22
VPS53-211ENST00000571805 SCGB1C2P0DMR2 95 aa16.41■□□□□ 0.22
VPS53-211ENST00000571805 STHQ8IWL8 128 aa16.41■□□□□ 0.22
VPS53-211ENST00000571805 C11orf44Q8N8P7 122 aa16.41■□□□□ 0.22
VPS53-211ENST00000571805 ERG28Q9UKR5 140 aa16.41■□□□□ 0.22
VPS53-211ENST00000571805 NF1P21359 2839 aa16.4■□□□□ 0.22
VPS53-211ENST00000571805 TRAV16A0A0A6YYK6 109 aaPredicted RBP16.4■□□□□ 0.22
VPS53-211ENST00000571805 NDUFA12Q9UI09 145 aa16.4■□□□□ 0.22
VPS53-211ENST00000571805 A8MZ25 164 aa16.4■□□□□ 0.22
VPS53-211ENST00000571805 NBPF19A0A087WUL8 3843 aa16.39■□□□□ 0.21
VPS53-211ENST00000571805 SONP18583 2426 aaKnown RBP16.39■□□□□ 0.21
VPS53-211ENST00000571805 A0A1W2PRX2 142 aa16.39■□□□□ 0.21
VPS53-211ENST00000571805 SPINK8P0C7L1 97 aa16.39■□□□□ 0.21
VPS53-211ENST00000571805 ADAMTSL4-AS1Q5T5F5 129 aa16.39■□□□□ 0.21
VPS53-211ENST00000571805 WFDC11Q8NEX6 87 aa16.38■□□□□ 0.21
VPS53-211ENST00000571805 ESM1Q9NQ30 184 aa16.38■□□□□ 0.21
VPS53-211ENST00000571805 CCL24O00175 119 aa16.38■□□□□ 0.21
VPS53-211ENST00000571805 IGHV3OR16-12A0A075B7B8 117 aa16.37■□□□□ 0.21
VPS53-211ENST00000571805 CARD19Q96LW7 228 aa16.37■□□□□ 0.21
VPS53-211ENST00000571805 SPANXDQ9BXN6 97 aa16.37■□□□□ 0.21
VPS53-211ENST00000571805 SPANXCQ9NY87 97 aa16.37■□□□□ 0.21
VPS53-211ENST00000571805 WNK1Q9H4A3 2382 aa16.37■□□□□ 0.21
VPS53-211ENST00000571805 TEN1Q86WV5 123 aa16.36■□□□□ 0.21
VPS53-211ENST00000571805 H7C2G1 150 aa16.36■□□□□ 0.21
VPS53-211ENST00000571805 TRGV1A0A0A0MS02 117 aa16.35■□□□□ 0.21
VPS53-211ENST00000571805 GEMIN7Q9H840 131 aaKnown RBP16.35■□□□□ 0.21
VPS53-211ENST00000571805 IGLV5-45A0A087WSX0 123 aa16.35■□□□□ 0.21
Retrieved 100 of 20,778 RNA–protein pairs in 47.4 ms