RNA–Protein interactions for RNA: ENST00000568076.6

CLN3-230, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,968 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-230ENST00000568076 NAA38Q9BRA0 125 aaKnown RBP14.62□□□□□ -0.07
CLN3-230ENST00000568076 CMC4P56277 68 aaPredicted RBP14.61□□□□□ -0.07
CLN3-230ENST00000568076 FAM110AQ9BQ89 295 aa14.61□□□□□ -0.07
CLN3-230ENST00000568076 TRBV7-3A0A075B6L6 115 aa14.6□□□□□ -0.07
CLN3-230ENST00000568076 H3BUT2 72 aa14.6□□□□□ -0.07
CLN3-230ENST00000568076 TAL2Q16559 108 aa14.6□□□□□ -0.07
CLN3-230ENST00000568076 NFE4Q86UQ8 179 aa14.6□□□□□ -0.07
CLN3-230ENST00000568076 ZNF815PA8K554 130 aa14.6□□□□□ -0.07
CLN3-230ENST00000568076 TMEM170BQ5T4T1 132 aa14.6□□□□□ -0.07
CLN3-230ENST00000568076 CHCHD7Q9BUK0 85 aa14.6□□□□□ -0.07
CLN3-230ENST00000568076 JMJD1CQ15652 2540 aa14.59□□□□□ -0.07
CLN3-230ENST00000568076 TRGV1A0A0A0MS02 117 aa14.59□□□□□ -0.07
CLN3-230ENST00000568076 K7ERJ3 54 aa14.59□□□□□ -0.07
CLN3-230ENST00000568076 OR4C5Q8NGB2 326 aa14.59□□□□□ -0.07
CLN3-230ENST00000568076 PLEKHB2Q96CS7 222 aa14.59□□□□□ -0.07
CLN3-230ENST00000568076 PYGO1Q9Y3Y4 419 aa14.59□□□□□ -0.07
CLN3-230ENST00000568076 SMIM13P0DJ93 91 aa14.58□□□□□ -0.07
CLN3-230ENST00000568076 TSPEAR-AS2P59090 65 aa14.58□□□□□ -0.07
CLN3-230ENST00000568076 HERVK_113P61574 105 aa14.58□□□□□ -0.07
CLN3-230ENST00000568076 CEMP1Q6PRD7 247 aaPredicted RBP14.58□□□□□ -0.07
CLN3-230ENST00000568076 TMEM263Q8WUH6 116 aaKnown RBP14.58□□□□□ -0.07
CLN3-230ENST00000568076 PHLDA1Q8WV24 401 aaPredicted RBP14.58□□□□□ -0.07
CLN3-230ENST00000568076 HIST1H4GQ99525 98 aa14.58□□□□□ -0.07
CLN3-230ENST00000568076 IGHV3-38A0A0C4DH36 116 aa14.58□□□□□ -0.08
CLN3-230ENST00000568076 RPL35AP18077 110 aaKnown RBP14.58□□□□□ -0.08
CLN3-230ENST00000568076 DNAJC30Q96LL9 226 aa14.58□□□□□ -0.08
CLN3-230ENST00000568076 VCX2Q9H322 139 aa14.58□□□□□ -0.08
CLN3-230ENST00000568076 NHP2Q9NX24 153 aaKnown RBP14.58□□□□□ -0.08
CLN3-230ENST00000568076 Q6ZTI0 123 aa14.57□□□□□ -0.08
CLN3-230ENST00000568076 NDUFA11Q86Y39 141 aa14.57□□□□□ -0.08
CLN3-230ENST00000568076 ZNF479Q96JC4 524 aa14.57□□□□□ -0.08
CLN3-230ENST00000568076 AMELXQ99217 191 aa14.56□□□□□ -0.08
CLN3-230ENST00000568076 INAFM1C9JVW0 142 aa14.56□□□□□ -0.08
CLN3-230ENST00000568076 A0A0J9YXV3 536 aa14.55□□□□□ -0.08
CLN3-230ENST00000568076 NOTCH2Q04721 2471 aa14.55□□□□□ -0.08
CLN3-230ENST00000568076 IGKV2D-29A0A075B6S2 120 aaPredicted RBP14.54□□□□□ -0.08
CLN3-230ENST00000568076 PLAC8L1A1L4L8 177 aa14.54□□□□□ -0.08
CLN3-230ENST00000568076 IGKV2-29A2NJV5 120 aaPredicted RBP14.54□□□□□ -0.08
CLN3-230ENST00000568076 ZNF22P17026 224 aaPredicted RBP14.54□□□□□ -0.08
CLN3-230ENST00000568076 CSNK1G2-AS1Q8NCQ2 148 aa14.54□□□□□ -0.08
CLN3-230ENST00000568076 UBE2D4Q9Y2X8 147 aa14.54□□□□□ -0.08
CLN3-230ENST00000568076 TMEM223A0PJW6 202 aa14.54□□□□□ -0.08
CLN3-230ENST00000568076 NOP10Q9NPE3 64 aaKnown RBP14.54□□□□□ -0.08
CLN3-230ENST00000568076 RNASE13Q5GAN3 156 aaKnown RBP14.53□□□□□ -0.08
CLN3-230ENST00000568076 SCGB1D4Q6XE38 83 aa14.53□□□□□ -0.08
CLN3-230ENST00000568076 LINC00482Q8N8I6 264 aa14.53□□□□□ -0.08
CLN3-230ENST00000568076 A0A1W2PPM0 123 aa14.53□□□□□ -0.08
CLN3-230ENST00000568076 GAGE10A6NGK3 116 aa14.53□□□□□ -0.08
CLN3-230ENST00000568076 COTL1Q14019 142 aa14.52□□□□□ -0.09
CLN3-230ENST00000568076 J3QQQ9 107 aa14.51□□□□□ -0.09
CLN3-230ENST00000568076 PF4P02776 101 aa14.51□□□□□ -0.09
CLN3-230ENST00000568076 CRYBA4P53673 196 aa14.51□□□□□ -0.09
CLN3-230ENST00000568076 DAZ2Q13117 558 aaKnown RBP14.51□□□□□ -0.09
CLN3-230ENST00000568076 TRAV4A0A0B4J268 109 aa14.51□□□□□ -0.09
CLN3-230ENST00000568076 A0A0J9YY99 117 aa14.51□□□□□ -0.09
CLN3-230ENST00000568076 C12orf74Q32Q52 190 aa14.51□□□□□ -0.09
CLN3-230ENST00000568076 SPANXA1Q9NS26 97 aa14.51□□□□□ -0.09
CLN3-230ENST00000568076 K7EP34 96 aa14.5□□□□□ -0.09
CLN3-230ENST00000568076 SAMD5Q5TGI4 173 aa14.5□□□□□ -0.09
CLN3-230ENST00000568076 C16orf74Q96GX8 76 aa14.5□□□□□ -0.09
CLN3-230ENST00000568076 MRPS36P82909 103 aaKnown RBP14.49□□□□□ -0.09
CLN3-230ENST00000568076 K7EQD1 137 aa14.49□□□□□ -0.09
CLN3-230ENST00000568076 LEPROTO15243 131 aa14.49□□□□□ -0.09
CLN3-230ENST00000568076 Q6ZUT4 128 aa14.49□□□□□ -0.09
CLN3-230ENST00000568076 C1QTNF4Q9BXJ3 329 aa14.49□□□□□ -0.09
CLN3-230ENST00000568076 IGHV3-64A0A075B6Q5 118 aa14.48□□□□□ -0.09
CLN3-230ENST00000568076 A0A1B0GWB2 263 aa14.48□□□□□ -0.09
CLN3-230ENST00000568076 SLC25A29Q8N8R3 303 aa14.48□□□□□ -0.09
CLN3-230ENST00000568076 OR5A1Q8NGJ0 315 aa14.48□□□□□ -0.09
CLN3-230ENST00000568076 LGALS3P17931 250 aaKnown RBP14.47□□□□□ -0.09
CLN3-230ENST00000568076 GTF2H5Q6ZYL4 71 aa14.47□□□□□ -0.09
CLN3-230ENST00000568076 SPATA3Q8NHX4 192 aa14.47□□□□□ -0.09
CLN3-230ENST00000568076 NSD1Q96L73 2696 aaPredicted RBP14.47□□□□□ -0.09
CLN3-230ENST00000568076 NOTCH3Q9UM47 2321 aa14.47□□□□□ -0.09
CLN3-230ENST00000568076 TRBV10-1A0A0K0K1A3 114 aa14.47□□□□□ -0.09
CLN3-230ENST00000568076 IGLL5B9A064 214 aa14.46□□□□□ -0.09
CLN3-230ENST00000568076 SRSF9Q13242 221 aaKnown RBP eCLIP14.46□□□□□ -0.09
CLN3-230ENST00000568076 SPCS1Q9Y6A9 102 aa14.46□□□□□ -0.09
CLN3-230ENST00000568076 GAGE12BA1L429 117 aa14.45□□□□□ -0.1
CLN3-230ENST00000568076 GAGE7O76087 117 aa14.45□□□□□ -0.1
CLN3-230ENST00000568076 GAGE12FP0CL80 117 aa14.45□□□□□ -0.1
CLN3-230ENST00000568076 GAGE12GP0CL81 117 aa14.45□□□□□ -0.1
CLN3-230ENST00000568076 GAGE12IP0CL82 117 aa14.45□□□□□ -0.1
CLN3-230ENST00000568076 FABP2P12104 132 aa14.45□□□□□ -0.1
CLN3-230ENST00000568076 RRN3P1Q2M238 152 aa14.45□□□□□ -0.1
CLN3-230ENST00000568076 RPL36AP83881 106 aaKnown RBP14.45□□□□□ -0.1
CLN3-230ENST00000568076 RPL36ALQ969Q0 106 aaKnown RBP14.45□□□□□ -0.1
CLN3-230ENST00000568076 OVOL2Q9BRP0 275 aa14.45□□□□□ -0.1
CLN3-230ENST00000568076 C2CD3Q4AC94 2353 aa14.45□□□□□ -0.1
CLN3-230ENST00000568076 NTM-AS1Q6ZSK4 140 aa14.44□□□□□ -0.1
CLN3-230ENST00000568076 FN1P02751 2386 aaKnown RBP14.44□□□□□ -0.1
CLN3-230ENST00000568076 UBE2D3P61077 147 aa14.43□□□□□ -0.1
CLN3-230ENST00000568076 UBE2D2P62837 147 aa14.43□□□□□ -0.1
CLN3-230ENST00000568076 SPANXB1Q9NS25 103 aaPredicted RBP14.43□□□□□ -0.1
CLN3-230ENST00000568076 VWFP04275 2813 aa14.43□□□□□ -0.1
CLN3-230ENST00000568076 TINCRA0A1B0GVN0 87 aa14.43□□□□□ -0.1
CLN3-230ENST00000568076 GAGE12JA6NER3 117 aa14.43□□□□□ -0.1
CLN3-230ENST00000568076 LINC00694P0DN24 101 aa14.43□□□□□ -0.1
CLN3-230ENST00000568076 GAGE4Q13068 117 aa14.43□□□□□ -0.1
CLN3-230ENST00000568076 GAGE5Q13069 117 aa14.43□□□□□ -0.1
Retrieved 100 of 20,778 RNA–protein pairs in 73.1 ms