RNA–Protein interactions for RNA: ENST00000563400.1

VPS35P1-201, Transcript of VPS35, retromer complex component pseudogene 1, humanhuman

BASIC

Gene VPS35P1, Length 1,518 nt, Biotype unprocessed pseudogene.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35P1-201ENST00000563400 LDLRAD2Q5SZI1 272 aa3.44□□□□□ -1.86
VPS35P1-201ENST00000563400 Q8N6K4 173 aa3.44□□□□□ -1.86
VPS35P1-201ENST00000563400 OR10P1Q8NGE3 313 aa3.44□□□□□ -1.86
VPS35P1-201ENST00000563400 C4orf3Q8WVX3 66 aa3.44□□□□□ -1.86
VPS35P1-201ENST00000563400 SLC39A9Q9NUM3 307 aa3.44□□□□□ -1.86
VPS35P1-201ENST00000563400 CR1P17927 2039 aa3.43□□□□□ -1.86
VPS35P1-201ENST00000563400 AGRNO00468 2067 aa3.43□□□□□ -1.86
VPS35P1-201ENST00000563400 IGHV1-58A0A0C4DH39 117 aa3.43□□□□□ -1.86
VPS35P1-201ENST00000563400 A0A0J9YWU9 116 aa3.43□□□□□ -1.86
VPS35P1-201ENST00000563400 CD24P25063 80 aa3.43□□□□□ -1.86
VPS35P1-201ENST00000563400 BLCAPP62952 87 aa3.43□□□□□ -1.86
VPS35P1-201ENST00000563400 DIAPH2-AS1Q14236 149 aa3.43□□□□□ -1.86
VPS35P1-201ENST00000563400 ZNF79Q15937 498 aa3.43□□□□□ -1.86
VPS35P1-201ENST00000563400 C10orf91Q5T1B1 145 aa3.43□□□□□ -1.86
VPS35P1-201ENST00000563400 EIF5AL1Q6IS14 154 aaKnown RBP3.43□□□□□ -1.86
VPS35P1-201ENST00000563400 KIRREL3-AS3Q8N7Y1 241 aaPredicted RBP3.43□□□□□ -1.86
VPS35P1-201ENST00000563400 TMEM14BQ9NUH8 114 aa3.43□□□□□ -1.86
VPS35P1-201ENST00000563400 ZFP30Q9Y2G7 519 aa3.43□□□□□ -1.86
VPS35P1-201ENST00000563400 LRBAP50851 2863 aa3.42□□□□□ -1.86
VPS35P1-201ENST00000563400 C2CD3Q4AC94 2353 aa3.42□□□□□ -1.86
VPS35P1-201ENST00000563400 ABCA2Q9BZC7 2435 aa3.42□□□□□ -1.86
VPS35P1-201ENST00000563400 SPENQ96T58 3664 aaKnown RBP3.42□□□□□ -1.86
VPS35P1-201ENST00000563400 MDFIC2A0A1B0GVS7 189 aa3.42□□□□□ -1.86
VPS35P1-201ENST00000563400 A0A1B0GW54 56 aa3.42□□□□□ -1.86
VPS35P1-201ENST00000563400 C19orf71A6NCJ1 209 aa3.42□□□□□ -1.86
VPS35P1-201ENST00000563400 FNDC10F2Z333 226 aa3.42□□□□□ -1.86
VPS35P1-201ENST00000563400 C17orf112F2Z3M2 114 aa3.42□□□□□ -1.86
VPS35P1-201ENST00000563400 H3BMM0 161 aa3.42□□□□□ -1.86
VPS35P1-201ENST00000563400 SYNGR2O43760 224 aa3.42□□□□□ -1.86
VPS35P1-201ENST00000563400 SLC25A20O43772 301 aa3.42□□□□□ -1.86
VPS35P1-201ENST00000563400 MDKP21741 143 aaPredicted RBP3.42□□□□□ -1.86
VPS35P1-201ENST00000563400 RNASE4P34096 147 aaKnown RBP3.42□□□□□ -1.86
VPS35P1-201ENST00000563400 NDUFA6P56556 154 aa3.42□□□□□ -1.86
VPS35P1-201ENST00000563400 HIGD2BQ4VC39 106 aa3.42□□□□□ -1.86
VPS35P1-201ENST00000563400 Q56UQ5 140 aa3.42□□□□□ -1.86
VPS35P1-201ENST00000563400 ZFP2Q6ZN57 461 aa3.42□□□□□ -1.86
VPS35P1-201ENST00000563400 MIR7-3HGQ8N6C7 128 aa3.42□□□□□ -1.86
VPS35P1-201ENST00000563400 UBE2WQ96B02 151 aa3.42□□□□□ -1.86
VPS35P1-201ENST00000563400 PSMG3Q9BT73 122 aaPredicted RBP3.42□□□□□ -1.86
VPS35P1-201ENST00000563400 UPK3BQ9BT76 320 aa3.42□□□□□ -1.86
VPS35P1-201ENST00000563400 NMES1Q9C002 83 aa3.42□□□□□ -1.86
VPS35P1-201ENST00000563400 NPVFQ9HCQ7 196 aa3.42□□□□□ -1.86
VPS35P1-201ENST00000563400 NDUFA4L2Q9NRX3 87 aa3.42□□□□□ -1.86
VPS35P1-201ENST00000563400 FLNAP21333 2647 aaKnown RBP3.42□□□□□ -1.86
VPS35P1-201ENST00000563400 DCHS2Q6V1P9 2916 aa3.41□□□□□ -1.86
VPS35P1-201ENST00000563400 TRAV13-1A0A0B4J241 112 aa3.41□□□□□ -1.86
VPS35P1-201ENST00000563400 H3BMG7 143 aa3.41□□□□□ -1.86
VPS35P1-201ENST00000563400 PDZD2O15018 2839 aa3.41□□□□□ -1.86
VPS35P1-201ENST00000563400 CCL25O15444 150 aa3.41□□□□□ -1.86
VPS35P1-201ENST00000563400 TCRAP04437 139 aa3.41□□□□□ -1.86
VPS35P1-201ENST00000563400 IGHV3-30-3P0DP02 117 aa3.41□□□□□ -1.86
VPS35P1-201ENST00000563400 HBBP68871 147 aa3.41□□□□□ -1.86
VPS35P1-201ENST00000563400 C15orf32Q32M92 178 aa3.41□□□□□ -1.86
VPS35P1-201ENST00000563400 C2orf83Q53S99 150 aa3.41□□□□□ -1.86
VPS35P1-201ENST00000563400 TEX261Q6UWH6 196 aa3.41□□□□□ -1.86
VPS35P1-201ENST00000563400 GTSCR1Q86UQ5 136 aa3.41□□□□□ -1.86
VPS35P1-201ENST00000563400 DYNLRB2Q8TF09 96 aa3.41□□□□□ -1.86
VPS35P1-201ENST00000563400 FXYD6Q9H0Q3 95 aa3.41□□□□□ -1.86
VPS35P1-201ENST00000563400 SOX21Q9Y651 276 aaPredicted RBP3.41□□□□□ -1.86
VPS35P1-201ENST00000563400 U3KQK5 164 aa3.41□□□□□ -1.86
VPS35P1-201ENST00000563400 TACC2O95359 2948 aa3.41□□□□□ -1.86
VPS35P1-201ENST00000563400 A0A087WYN8 130 aa3.4□□□□□ -1.86
VPS35P1-201ENST00000563400 IGKV3D-20A0A0C4DH25 116 aa3.4□□□□□ -1.86
VPS35P1-201ENST00000563400 NDUFA4O00483 81 aa3.4□□□□□ -1.86
VPS35P1-201ENST00000563400 SH2D1AO60880 128 aa3.4□□□□□ -1.86
VPS35P1-201ENST00000563400 FOXA3P55318 350 aaPredicted RBP3.4□□□□□ -1.86
VPS35P1-201ENST00000563400 PRB3Q04118 309 aaPredicted RBP3.4□□□□□ -1.86
VPS35P1-201ENST00000563400 EIF4EBP1Q13541 118 aaPredicted RBP3.4□□□□□ -1.86
VPS35P1-201ENST00000563400 NMSQ5H8A3 153 aa3.4□□□□□ -1.86
VPS35P1-201ENST00000563400 DYNAPQ8N1N2 210 aa3.4□□□□□ -1.86
VPS35P1-201ENST00000563400 PSENENQ9NZ42 101 aa3.4□□□□□ -1.86
VPS35P1-201ENST00000563400 EPDR1Q9UM22 224 aa3.4□□□□□ -1.86
VPS35P1-201ENST00000563400 ICOSQ9Y6W8 199 aa3.4□□□□□ -1.86
VPS35P1-201ENST00000563400 ARHGAP32A7KAX9 2087 aa3.4□□□□□ -1.87
VPS35P1-201ENST00000563400 ACANP16112 2415 aa3.4□□□□□ -1.87
VPS35P1-201ENST00000563400 IGKV1OR2-108A0A075B7D4 117 aa3.39□□□□□ -1.87
VPS35P1-201ENST00000563400 TRAV14DV4A0A0A6YYC5 116 aa3.39□□□□□ -1.87
VPS35P1-201ENST00000563400 A0A0B4J2C4 111 aa3.39□□□□□ -1.87
VPS35P1-201ENST00000563400 ZNF727A8MUV8 499 aa3.39□□□□□ -1.87
VPS35P1-201ENST00000563400 YPEL3P61236 119 aaPredicted RBP3.39□□□□□ -1.87
VPS35P1-201ENST00000563400 PKIAP61925 76 aa3.39□□□□□ -1.87
VPS35P1-201ENST00000563400 AKR1C1Q04828 323 aa3.39□□□□□ -1.87
VPS35P1-201ENST00000563400 SPANXN5Q5MJ07 72 aa3.39□□□□□ -1.87
VPS35P1-201ENST00000563400 FAAP20Q6NZ36 180 aa3.39□□□□□ -1.87
VPS35P1-201ENST00000563400 Q6ZTC4 211 aa3.39□□□□□ -1.87
VPS35P1-201ENST00000563400 LYZL2Q7Z4W2 148 aa3.39□□□□□ -1.87
VPS35P1-201ENST00000563400 OSTCQ9NRP0 149 aa3.39□□□□□ -1.87
VPS35P1-201ENST00000563400 IGLV2-33A0A075B6J2 118 aaPredicted RBP3.39□□□□□ -1.87
VPS35P1-201ENST00000563400 TRBV24-1A0A075B6N3 115 aa3.39□□□□□ -1.87
VPS35P1-201ENST00000563400 A8MUU9 505 aa3.39□□□□□ -1.87
VPS35P1-201ENST00000563400 CCDC179H3BU77 68 aa3.39□□□□□ -1.87
VPS35P1-201ENST00000563400 S100A10P60903 97 aa3.39□□□□□ -1.87
VPS35P1-201ENST00000563400 KLK9Q2XQG4 91 aa3.39□□□□□ -1.87
VPS35P1-201ENST00000563400 FAM74A1Q5RGS3 127 aa3.39□□□□□ -1.87
VPS35P1-201ENST00000563400 ZNF705AQ6ZN79 300 aaPredicted RBP3.39□□□□□ -1.87
VPS35P1-201ENST00000563400 PHF5AQ7RTV0 110 aaKnown RBP3.39□□□□□ -1.87
VPS35P1-201ENST00000563400 HIST3H2BBQ8N257 126 aa3.39□□□□□ -1.87
VPS35P1-201ENST00000563400 C10orf126Q8N4M7 172 aa3.39□□□□□ -1.87
VPS35P1-201ENST00000563400 WFDC9Q8NEX5 89 aa3.39□□□□□ -1.87
VPS35P1-201ENST00000563400 FAM103A1Q9BTL3 118 aaKnown RBP3.39□□□□□ -1.87
Retrieved 100 of 20,778 RNA–protein pairs in 64.3 ms