RNA–Protein interactions for RNA: ENST00000563220.1

COMMD4-208, Transcript of COMM domain containing 4, humanhuman

TSL 2

Gene COMMD4, Length 1,897 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COMMD4-208ENST00000563220 TOMM6Q96B49 74 aa12.82□□□□□ -0.36
COMMD4-208ENST00000563220 COX11Q9Y6N1 276 aa12.82□□□□□ -0.36
COMMD4-208ENST00000563220 TSHBP01222 138 aa12.81□□□□□ -0.36
COMMD4-208ENST00000563220 SLC25A29Q8N8R3 303 aa12.81□□□□□ -0.36
COMMD4-208ENST00000563220 Q8NAQ8 132 aa12.81□□□□□ -0.36
COMMD4-208ENST00000563220 FAM222AQ5U5X8 452 aa12.8□□□□□ -0.36
COMMD4-208ENST00000563220 C2orf66Q6UXQ4 117 aa12.8□□□□□ -0.36
COMMD4-208ENST00000563220 DNAJC30Q96LL9 226 aa12.8□□□□□ -0.36
COMMD4-208ENST00000563220 K7EQD1 137 aa12.8□□□□□ -0.36
COMMD4-208ENST00000563220 MIFP14174 115 aa12.8□□□□□ -0.36
COMMD4-208ENST00000563220 CIDEAO60543 219 aa12.79□□□□□ -0.36
COMMD4-208ENST00000563220 FHL2Q14192 279 aa12.79□□□□□ -0.36
COMMD4-208ENST00000563220 MPV17L2Q567V2 206 aa12.79□□□□□ -0.36
COMMD4-208ENST00000563220 BVES-AS1Q5T3Y7 98 aa12.79□□□□□ -0.36
COMMD4-208ENST00000563220 ZNRF2Q8NHG8 242 aa12.78□□□□□ -0.36
COMMD4-208ENST00000563220 LYRM9A8MSI8 78 aa12.78□□□□□ -0.36
COMMD4-208ENST00000563220 ATP5LO75964 103 aa12.78□□□□□ -0.36
COMMD4-208ENST00000563220 PRB2P02812 416 aaPredicted RBP12.78□□□□□ -0.36
COMMD4-208ENST00000563220 RIPPLY3P57055 190 aa12.78□□□□□ -0.36
COMMD4-208ENST00000563220 SCGB3A1Q96QR1 104 aa12.78□□□□□ -0.36
COMMD4-208ENST00000563220 DKK2Q9UBU2 259 aa12.78□□□□□ -0.36
COMMD4-208ENST00000563220 TP73-AS1Q9UF72 201 aa12.78□□□□□ -0.36
COMMD4-208ENST00000563220 TRGV4A0A0C4DH28 118 aa12.77□□□□□ -0.37
COMMD4-208ENST00000563220 IGHV3-38A0A0C4DH36 116 aa12.77□□□□□ -0.37
COMMD4-208ENST00000563220 TRBV10-1A0A0K0K1A3 114 aa12.77□□□□□ -0.37
COMMD4-208ENST00000563220 FGF6P10767 208 aa12.77□□□□□ -0.37
COMMD4-208ENST00000563220 RPL39P62891 51 aaKnown RBP12.77□□□□□ -0.37
COMMD4-208ENST00000563220 RHOHQ15669 191 aa12.77□□□□□ -0.37
COMMD4-208ENST00000563220 PHLDA1Q8WV24 401 aaPredicted RBP12.77□□□□□ -0.37
COMMD4-208ENST00000563220 RETNQ9HD89 108 aa12.77□□□□□ -0.37
COMMD4-208ENST00000563220 TRBV7-3A0A075B6L6 115 aa12.76□□□□□ -0.37
COMMD4-208ENST00000563220 ANKRD39Q53RE8 183 aa12.76□□□□□ -0.37
COMMD4-208ENST00000563220 C2orf91Q6ZV80 131 aa12.76□□□□□ -0.37
COMMD4-208ENST00000563220 CYSLTR1Q9Y271 337 aa12.76□□□□□ -0.37
COMMD4-208ENST00000563220 TP53TG1Q9Y2A0 90 aa12.76□□□□□ -0.37
COMMD4-208ENST00000563220 NOTCH1P46531 2555 aa12.76□□□□□ -0.37
COMMD4-208ENST00000563220 TRBV6-4A0A1B0GX49 114 aa12.76□□□□□ -0.37
COMMD4-208ENST00000563220 PRSS1P07477 247 aa12.76□□□□□ -0.37
COMMD4-208ENST00000563220 BOD1L2Q8IYS8 172 aa12.75□□□□□ -0.37
COMMD4-208ENST00000563220 ZMAT4Q9H898 229 aa12.75□□□□□ -0.37
COMMD4-208ENST00000563220 CELA1Q9UNI1 258 aa12.75□□□□□ -0.37
COMMD4-208ENST00000563220 LOC100131303A0A0U1RQF7 123 aa12.74□□□□□ -0.37
COMMD4-208ENST00000563220 GAGE12JA6NER3 117 aa12.74□□□□□ -0.37
COMMD4-208ENST00000563220 BORCS8-MEF2BH3BNR1 382 aaPredicted RBP12.74□□□□□ -0.37
COMMD4-208ENST00000563220 SIVA1O15304 175 aa12.74□□□□□ -0.37
COMMD4-208ENST00000563220 RPL36AP83881 106 aaKnown RBP12.74□□□□□ -0.37
COMMD4-208ENST00000563220 GAGE4Q13068 117 aa12.74□□□□□ -0.37
COMMD4-208ENST00000563220 GAGE5Q13069 117 aa12.74□□□□□ -0.37
COMMD4-208ENST00000563220 GAGE13Q4V321 117 aa12.74□□□□□ -0.37
COMMD4-208ENST00000563220 RPL36ALQ969Q0 106 aaKnown RBP12.74□□□□□ -0.37
COMMD4-208ENST00000563220 IGIPA6NJ69 53 aa12.74□□□□□ -0.37
COMMD4-208ENST00000563220 ERASQ7Z444 233 aa12.74□□□□□ -0.37
COMMD4-208ENST00000563220 C20orf203Q8NBC4 194 aa12.74□□□□□ -0.37
COMMD4-208ENST00000563220 UBE2V1Q13404 147 aa12.73□□□□□ -0.37
COMMD4-208ENST00000563220 TAX1BP3O14907 124 aa12.72□□□□□ -0.37
COMMD4-208ENST00000563220 UBE2D3P61077 147 aa12.72□□□□□ -0.37
COMMD4-208ENST00000563220 UBE2D2P62837 147 aa12.72□□□□□ -0.37
COMMD4-208ENST00000563220 ODF1Q14990 250 aa12.72□□□□□ -0.37
COMMD4-208ENST00000563220 KPRPQ5T749 579 aaPredicted RBP12.72□□□□□ -0.37
COMMD4-208ENST00000563220 CHCHD7Q9BUK0 85 aa12.72□□□□□ -0.37
COMMD4-208ENST00000563220 K7EIL1 84 aa12.72□□□□□ -0.37
COMMD4-208ENST00000563220 SEC11AP67812 179 aa12.72□□□□□ -0.37
COMMD4-208ENST00000563220 HHLA3Q9XRX5 114 aa12.72□□□□□ -0.37
COMMD4-208ENST00000563220 MGAM2Q2M2H8 2515 aa12.71□□□□□ -0.37
COMMD4-208ENST00000563220 COTL1Q14019 142 aa12.71□□□□□ -0.37
COMMD4-208ENST00000563220 NBEAL1Q6ZS30 2694 aa12.71□□□□□ -0.38
COMMD4-208ENST00000563220 LINC01549A6NIU2 74 aa12.7□□□□□ -0.38
COMMD4-208ENST00000563220 SPART-AS1P0CW21 52 aa12.7□□□□□ -0.38
COMMD4-208ENST00000563220 DAD1P61803 113 aa12.7□□□□□ -0.38
COMMD4-208ENST00000563220 BAALCQ8WXS3 180 aa12.7□□□□□ -0.38
COMMD4-208ENST00000563220 CCL25O15444 150 aa12.7□□□□□ -0.38
COMMD4-208ENST00000563220 PTTG1IPP53801 180 aa12.7□□□□□ -0.38
COMMD4-208ENST00000563220 TMEM97Q5BJF2 176 aa12.7□□□□□ -0.38
COMMD4-208ENST00000563220 Q6ZVH6 145 aa12.7□□□□□ -0.38
COMMD4-208ENST00000563220 DAZ4Q86SG3 579 aaKnown RBP12.7□□□□□ -0.38
COMMD4-208ENST00000563220 SBSPONQ8IVN8 264 aa12.7□□□□□ -0.38
COMMD4-208ENST00000563220 TIMM17AQ99595 171 aa12.7□□□□□ -0.38
COMMD4-208ENST00000563220 PRADC1Q9BSG0 188 aa12.7□□□□□ -0.38
COMMD4-208ENST00000563220 DAZ3Q9NR90 486 aaKnown RBP12.7□□□□□ -0.38
COMMD4-208ENST00000563220 A0A087WX48 190 aa12.68□□□□□ -0.38
COMMD4-208ENST00000563220 TRAV12-1A0A0B4J245 112 aa12.68□□□□□ -0.38
COMMD4-208ENST00000563220 CRYBA4P53673 196 aa12.68□□□□□ -0.38
COMMD4-208ENST00000563220 NTM-AS1Q6ZSK4 140 aa12.68□□□□□ -0.38
COMMD4-208ENST00000563220 TMEM141Q96I45 108 aa12.68□□□□□ -0.38
COMMD4-208ENST00000563220 OPRPNQ99935 248 aaPredicted RBP12.68□□□□□ -0.38
COMMD4-208ENST00000563220 ZC2HC1BQ5TFG8 222 aa12.68□□□□□ -0.38
COMMD4-208ENST00000563220 MRPL35Q9NZE8 188 aaKnown RBP12.68□□□□□ -0.38
COMMD4-208ENST00000563220 IGKV2D-29A0A075B6S2 120 aaPredicted RBP12.67□□□□□ -0.38
COMMD4-208ENST00000563220 IGKV2-29A2NJV5 120 aaPredicted RBP12.67□□□□□ -0.38
COMMD4-208ENST00000563220 PRSS29PA6NIE9 313 aa12.67□□□□□ -0.38
COMMD4-208ENST00000563220 LINC00694P0DN24 101 aa12.67□□□□□ -0.38
COMMD4-208ENST00000563220 HSD52Q0P140 79 aa12.67□□□□□ -0.38
COMMD4-208ENST00000563220 PRO0255Q9UI72 69 aa12.67□□□□□ -0.38
COMMD4-208ENST00000563220 DPM2O94777 84 aa12.66□□□□□ -0.38
COMMD4-208ENST00000563220 IGKCP01834 107 aa12.66□□□□□ -0.38
COMMD4-208ENST00000563220 DEFB121Q5J5C9 76 aa12.65□□□□□ -0.38
COMMD4-208ENST00000563220 FAM104AQ969W3 186 aa12.65□□□□□ -0.38
COMMD4-208ENST00000563220 ATP5G1P05496 136 aa12.65□□□□□ -0.38
COMMD4-208ENST00000563220 GYPEP15421 78 aa12.65□□□□□ -0.38
COMMD4-208ENST00000563220 CEMP1Q6PRD7 247 aaPredicted RBP12.65□□□□□ -0.38
Retrieved 100 of 20,778 RNA–protein pairs in 52.2 ms