RNA–Protein interactions for RNA: ENST00000558088.1

VPS13C-205, Transcript of vacuolar protein sorting 13 homolog C, humanhuman

TSL 2

Gene VPS13C, Length 549 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13C-205ENST00000558088 SDF2Q99470 211 aa-1.25□□□□□ -2.61
VPS13C-205ENST00000558088 LINC00312Q9Y6C7 94 aa-1.25□□□□□ -2.61
VPS13C-205ENST00000558088 R4GMQ9 66 aa-1.25□□□□□ -2.61
VPS13C-205ENST00000558088 UHRF1BP1LA0JNW5 1464 aa-1.25□□□□□ -2.61
VPS13C-205ENST00000558088 DNAH6Q9C0G6 4158 aa-1.26□□□□□ -2.61
VPS13C-205ENST00000558088 LRP6O75581 1613 aa-1.26□□□□□ -2.61
VPS13C-205ENST00000558088 TSC2P49815 1807 aa-1.26□□□□□ -2.61
VPS13C-205ENST00000558088 CLPSL1A2RUU4 121 aa-1.26□□□□□ -2.61
VPS13C-205ENST00000558088 TMEM238C9JI98 176 aa-1.26□□□□□ -2.61
VPS13C-205ENST00000558088 H0YJX3 145 aa-1.26□□□□□ -2.61
VPS13C-205ENST00000558088 M0R135 149 aa-1.26□□□□□ -2.61
VPS13C-205ENST00000558088 S100GP29377 79 aa-1.26□□□□□ -2.61
VPS13C-205ENST00000558088 TMEM128Q5BJH2 165 aa-1.26□□□□□ -2.61
VPS13C-205ENST00000558088 TMEM170BQ5T4T1 132 aa-1.26□□□□□ -2.61
VPS13C-205ENST00000558088 Q6JHZ5 121 aa-1.26□□□□□ -2.61
VPS13C-205ENST00000558088 AGPAT4-IT1Q9H0P7 198 aa-1.26□□□□□ -2.61
VPS13C-205ENST00000558088 OVOS2A0A0G2JMS6 1433 aa-1.26□□□□□ -2.61
VPS13C-205ENST00000558088 SYNMO15061 1565 aa-1.26□□□□□ -2.61
VPS13C-205ENST00000558088 WDR97A6NE52 1622 aa-1.26□□□□□ -2.61
VPS13C-205ENST00000558088 IFT172Q9UG01 1749 aa-1.26□□□□□ -2.61
VPS13C-205ENST00000558088 WNK3Q9BYP7 1800 aa-1.26□□□□□ -2.61
VPS13C-205ENST00000558088 M0R129 80 aa-1.27□□□□□ -2.61
VPS13C-205ENST00000558088 NCS1P62166 190 aa-1.27□□□□□ -2.61
VPS13C-205ENST00000558088 MIC13Q5XKP0 118 aa-1.27□□□□□ -2.61
VPS13C-205ENST00000558088 MNS1Q8NEH6 495 aa-1.27□□□□□ -2.61
VPS13C-205ENST00000558088 MAGOHBQ96A72 148 aaKnown RBP-1.27□□□□□ -2.61
VPS13C-205ENST00000558088 IQSEC2Q5JU85 1478 aa-1.27□□□□□ -2.61
VPS13C-205ENST00000558088 KDM5CP41229 1560 aa-1.27□□□□□ -2.61
VPS13C-205ENST00000558088 LAMC1P11047 1609 aa-1.27□□□□□ -2.61
VPS13C-205ENST00000558088 PARP14Q460N5 1801 aa-1.27□□□□□ -2.61
VPS13C-205ENST00000558088 TACC2O95359 2948 aa-1.27□□□□□ -2.61
VPS13C-205ENST00000558088 RYR2Q92736 4967 aa-1.27□□□□□ -2.61
VPS13C-205ENST00000558088 ERCC6Q03468 1493 aa-1.28□□□□□ -2.61
VPS13C-205ENST00000558088 SNCGO76070 127 aa-1.28□□□□□ -2.61
VPS13C-205ENST00000558088 DEFB135Q30KP9 77 aa-1.28□□□□□ -2.61
VPS13C-205ENST00000558088 TCTE3Q8IZS6 198 aa-1.28□□□□□ -2.61
VPS13C-205ENST00000558088 VSTM2AQ8TAG5 236 aa-1.28□□□□□ -2.61
VPS13C-205ENST00000558088 EIF3AQ14152 1382 aaKnown RBP-1.29□□□□□ -2.62
VPS13C-205ENST00000558088 IL5P05113 134 aa-1.29□□□□□ -2.62
VPS13C-205ENST00000558088 NIPBLQ6KC79 2804 aaeCLIP-1.29□□□□□ -2.62
VPS13C-205ENST00000558088 DNAJC13O75165 2243 aa-1.3□□□□□ -2.62
VPS13C-205ENST00000558088 PIPP12273 146 aaPredicted RBP-1.3□□□□□ -2.62
VPS13C-205ENST00000558088 GNG10P50151 68 aa-1.3□□□□□ -2.62
VPS13C-205ENST00000558088 CCL18P55774 89 aa-1.3□□□□□ -2.62
VPS13C-205ENST00000558088 ZNF818PQ6ZRF7 136 aa-1.3□□□□□ -2.62
VPS13C-205ENST00000558088 PSMG3Q9BT73 122 aaPredicted RBP-1.3□□□□□ -2.62
VPS13C-205ENST00000558088 SEC11CQ9BY50 192 aa-1.3□□□□□ -2.62
VPS13C-205ENST00000558088 MUC17Q685J3 4493 aa-1.31□□□□□ -2.62
VPS13C-205ENST00000558088 AKAP13Q12802 2813 aa-1.31□□□□□ -2.62
VPS13C-205ENST00000558088 PKHD1L1Q86WI1 4243 aa-1.31□□□□□ -2.62
VPS13C-205ENST00000558088 TRBV20-1A0A075B6N2 111 aa-1.31□□□□□ -2.62
VPS13C-205ENST00000558088 SYS1-DBNDD2H3BUS1 97 aa-1.31□□□□□ -2.62
VPS13C-205ENST00000558088 TNFSF15O95150 251 aa-1.31□□□□□ -2.62
VPS13C-205ENST00000558088 HIGD1AQ9Y241 93 aa-1.31□□□□□ -2.62
VPS13C-205ENST00000558088 GOLGA4Q13439 2230 aaKnown RBP-1.31□□□□□ -2.62
VPS13C-205ENST00000558088 KDM3BQ7LBC6 1761 aa-1.31□□□□□ -2.62
VPS13C-205ENST00000558088 DNAH3Q8TD57 4116 aa-1.32□□□□□ -2.62
VPS13C-205ENST00000558088 A0A1B0GV72 72 aa-1.32□□□□□ -2.62
VPS13C-205ENST00000558088 E5RI56 91 aa-1.32□□□□□ -2.62
VPS13C-205ENST00000558088 CBLN1P23435 193 aa-1.32□□□□□ -2.62
VPS13C-205ENST00000558088 CDC26Q8NHZ8 85 aa-1.32□□□□□ -2.62
VPS13C-205ENST00000558088 SAR1AQ9NR31 198 aa-1.32□□□□□ -2.62
VPS13C-205ENST00000558088 APLNQ9ULZ1 77 aa-1.32□□□□□ -2.62
VPS13C-205ENST00000558088 ARHGEF10O15013 1369 aa-1.33□□□□□ -2.62
VPS13C-205ENST00000558088 ROCK1Q13464 1354 aa-1.33□□□□□ -2.62
VPS13C-205ENST00000558088 SPTBN4Q9H254 2564 aa-1.33□□□□□ -2.62
VPS13C-205ENST00000558088 RRAS2P62070 204 aaPredicted RBP-1.33□□□□□ -2.62
VPS13C-205ENST00000558088 C10orf128Q5T292 105 aa-1.33□□□□□ -2.62
VPS13C-205ENST00000558088 TOMM20LQ6UXN7 152 aa-1.33□□□□□ -2.62
VPS13C-205ENST00000558088 SKA2Q8WVK7 121 aaPredicted RBP-1.33□□□□□ -2.62
VPS13C-205ENST00000558088 V9GYH0 126 aa-1.33□□□□□ -2.62
VPS13C-205ENST00000558088 DSPP15924 2871 aaKnown RBP-1.33□□□□□ -2.62
VPS13C-205ENST00000558088 PAPPAQ13219 1627 aa-1.33□□□□□ -2.62
VPS13C-205ENST00000558088 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP-1.34□□□□□ -2.62
VPS13C-205ENST00000558088 TRAV36DV7A0A075B6V5 113 aa-1.34□□□□□ -2.62
VPS13C-205ENST00000558088 RPS28P62857 69 aaKnown RBP-1.34□□□□□ -2.62
VPS13C-205ENST00000558088 COX17Q14061 63 aa-1.34□□□□□ -2.62
VPS13C-205ENST00000558088 MMGT1Q8N4V1 131 aa-1.34□□□□□ -2.62
VPS13C-205ENST00000558088 SPTSSAQ969W0 71 aa-1.34□□□□□ -2.62
VPS13C-205ENST00000558088 AQP10Q96PS8 301 aa-1.34□□□□□ -2.62
VPS13C-205ENST00000558088 BICRAQ9NZM4 1560 aa-1.34□□□□□ -2.62
VPS13C-205ENST00000558088 PRKDCP78527 4128 aaKnown RBP-1.34□□□□□ -2.62
VPS13C-205ENST00000558088 POLA1P09884 1462 aaPredicted RBP-1.35□□□□□ -2.63
VPS13C-205ENST00000558088 TNRC18O15417 2968 aaPredicted RBP-1.35□□□□□ -2.63
VPS13C-205ENST00000558088 PITX3O75364 302 aa-1.35□□□□□ -2.63
VPS13C-205ENST00000558088 TFAMQ00059 246 aaKnown RBP-1.35□□□□□ -2.63
VPS13C-205ENST00000558088 MAFIPQ8WZ33 124 aa-1.35□□□□□ -2.63
VPS13C-205ENST00000558088 MUC22E2RYF6 1773 aaPredicted RBP-1.35□□□□□ -2.63
VPS13C-205ENST00000558088 SIPA1L3O60292 1781 aaPredicted RBP-1.35□□□□□ -2.63
VPS13C-205ENST00000558088 PRRC2CQ9Y520 2896 aaKnown RBP-1.35□□□□□ -2.63
VPS13C-205ENST00000558088 SYNJ1O43426 1573 aa-1.36□□□□□ -2.63
VPS13C-205ENST00000558088 E2F6O75461 281 aa-1.36□□□□□ -2.63
VPS13C-205ENST00000558088 SCTP09683 121 aa-1.36□□□□□ -2.63
VPS13C-205ENST00000558088 CCL8P80075 99 aa-1.36□□□□□ -2.63
VPS13C-205ENST00000558088 DEFB112Q30KQ8 113 aa-1.36□□□□□ -2.63
VPS13C-205ENST00000558088 RIF1Q5UIP0 2472 aaKnown RBP-1.37□□□□□ -2.63
VPS13C-205ENST00000558088 FAM236AA0A1B0GUQ0 79 aa-1.37□□□□□ -2.63
VPS13C-205ENST00000558088 FAM236BA0A1B0GV22 79 aa-1.37□□□□□ -2.63
VPS13C-205ENST00000558088 COX8AP10176 69 aa-1.37□□□□□ -2.63
VPS13C-205ENST00000558088 TAC4Q86UU9 113 aa-1.37□□□□□ -2.63
Retrieved 100 of 20,778 RNA–protein pairs in 77 ms