RNA–Protein interactions for RNA: ENST00000557427.5

SHMT2-230, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 4

Gene SHMT2, Length 569 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-230ENST00000557427 SMIM17P0DL12 118 aa8.8□□□□□ -1
SHMT2-230ENST00000557427 HTN1P15515 57 aa8.8□□□□□ -1
SHMT2-230ENST00000557427 LINC00315P59091 139 aa8.8□□□□□ -1
SHMT2-230ENST00000557427 RRN3P1Q2M238 152 aa8.8□□□□□ -1
SHMT2-230ENST00000557427 LINC01587Q99440 93 aa8.8□□□□□ -1
SHMT2-230ENST00000557427 SMIM2Q9BVW6 85 aa8.8□□□□□ -1
SHMT2-230ENST00000557427 EPM2AB3EWF7 344 aa8.79□□□□□ -1
SHMT2-230ENST00000557427 INSP01308 110 aa8.79□□□□□ -1
SHMT2-230ENST00000557427 MGPP08493 103 aa8.79□□□□□ -1
SHMT2-230ENST00000557427 RPL32P62910 135 aaKnown RBP8.79□□□□□ -1
SHMT2-230ENST00000557427 FAM222AQ5U5X8 452 aa8.79□□□□□ -1
SHMT2-230ENST00000557427 MRPL52Q86TS9 123 aaKnown RBP8.79□□□□□ -1
SHMT2-230ENST00000557427 RASL10AQ92737 203 aa8.79□□□□□ -1
SHMT2-230ENST00000557427 IFI27L1Q96BM0 104 aa8.79□□□□□ -1
SHMT2-230ENST00000557427 MDFICQ9P1T7 246 aa8.79□□□□□ -1
SHMT2-230ENST00000557427 DKK2Q9UBU2 259 aa8.79□□□□□ -1
SHMT2-230ENST00000557427 SRRM2Q9UQ35 2752 aaKnown RBP8.79□□□□□ -1
SHMT2-230ENST00000557427 FAT1Q14517 4588 aa8.78□□□□□ -1
SHMT2-230ENST00000557427 IGLC3P0DOY3 106 aa8.78□□□□□ -1
SHMT2-230ENST00000557427 HTN3P15516 51 aa8.78□□□□□ -1
SHMT2-230ENST00000557427 AZU1P20160 251 aa8.78□□□□□ -1
SHMT2-230ENST00000557427 SUMO2P61956 95 aaKnown RBP8.78□□□□□ -1
SHMT2-230ENST00000557427 LAGE3Q14657 143 aa8.78□□□□□ -1
SHMT2-230ENST00000557427 ATOH7Q8N100 152 aa8.78□□□□□ -1
SHMT2-230ENST00000557427 PTH2Q96A98 100 aa8.78□□□□□ -1
SHMT2-230ENST00000557427 UQCR10Q9UDW1 63 aa8.78□□□□□ -1
SHMT2-230ENST00000557427 FLG2Q5D862 2391 aaPredicted RBP8.77□□□□□ -1.01
SHMT2-230ENST00000557427 CBY3A6NI87 242 aa8.77□□□□□ -1.01
SHMT2-230ENST00000557427 PIK3CD-AS1Q5SR53 167 aa8.77□□□□□ -1.01
SHMT2-230ENST00000557427 NACAE9PAV3 2078 aa8.76□□□□□ -1.01
SHMT2-230ENST00000557427 ZNF415Q09FC8 603 aa8.76□□□□□ -1.01
SHMT2-230ENST00000557427 ORMDL2Q53FV1 153 aa8.76□□□□□ -1.01
SHMT2-230ENST00000557427 LBHQ53QV2 105 aaPredicted RBP8.76□□□□□ -1.01
SHMT2-230ENST00000557427 RPL39LQ96EH5 51 aaKnown RBP8.76□□□□□ -1.01
SHMT2-230ENST00000557427 ST20Q9HBF5 79 aa8.76□□□□□ -1.01
SHMT2-230ENST00000557427 TRBV6-5A0A0K0K1A5 114 aa8.75□□□□□ -1.01
SHMT2-230ENST00000557427 HSBP1L1C9JCN9 74 aa8.75□□□□□ -1.01
SHMT2-230ENST00000557427 ATP5LO75964 103 aa8.75□□□□□ -1.01
SHMT2-230ENST00000557427 DAD1P61803 113 aa8.75□□□□□ -1.01
SHMT2-230ENST00000557427 MAJINQ3KP22 176 aa8.75□□□□□ -1.01
SHMT2-230ENST00000557427 SUMO4Q6EEV6 95 aa8.75□□□□□ -1.01
SHMT2-230ENST00000557427 JPT2Q9H910 190 aa8.75□□□□□ -1.01
SHMT2-230ENST00000557427 VPS13BQ7Z7G8 4022 aa8.75□□□□□ -1.01
SHMT2-230ENST00000557427 H0Y8G0 127 aa8.74□□□□□ -1.01
SHMT2-230ENST00000557427 TCAPO15273 167 aa8.74□□□□□ -1.01
SHMT2-230ENST00000557427 CRYGDP07320 174 aa8.74□□□□□ -1.01
SHMT2-230ENST00000557427 DEFB130BP0DP73 79 aa8.74□□□□□ -1.01
SHMT2-230ENST00000557427 DEFB130AP0DP74 79 aa8.74□□□□□ -1.01
SHMT2-230ENST00000557427 A0A087WWL8 130 aa8.73□□□□□ -1.01
SHMT2-230ENST00000557427 TEX48A0A1B0GUV7 120 aa8.73□□□□□ -1.01
SHMT2-230ENST00000557427 LINC01549A6NIU2 74 aa8.73□□□□□ -1.01
SHMT2-230ENST00000557427 M0R2P5 195 aa8.73□□□□□ -1.01
SHMT2-230ENST00000557427 G0S2P27469 103 aa8.73□□□□□ -1.01
SHMT2-230ENST00000557427 POLR2KP53803 58 aaKnown RBP8.73□□□□□ -1.01
SHMT2-230ENST00000557427 ZNF876PQ49A33 203 aa8.73□□□□□ -1.01
SHMT2-230ENST00000557427 UBE2DNLQ8IWF7 75 aa8.73□□□□□ -1.01
SHMT2-230ENST00000557427 SPXQ9BT56 116 aa8.73□□□□□ -1.01
SHMT2-230ENST00000557427 hDV102S1A0JD36 115 aa8.72□□□□□ -1.01
SHMT2-230ENST00000557427 A8MWV9 139 aa8.72□□□□□ -1.01
SHMT2-230ENST00000557427 F5H697 171 aa8.72□□□□□ -1.01
SHMT2-230ENST00000557427 M0R143 59 aa8.72□□□□□ -1.01
SHMT2-230ENST00000557427 NUDT3O95989 172 aa8.72□□□□□ -1.01
SHMT2-230ENST00000557427 TOMM6Q96B49 74 aa8.72□□□□□ -1.01
SHMT2-230ENST00000557427 C18orf15Q96N68 181 aa8.72□□□□□ -1.01
SHMT2-230ENST00000557427 C2orf88Q9BSF0 95 aa8.72□□□□□ -1.01
SHMT2-230ENST00000557427 HMCN2Q8NDA2 5059 aa8.71□□□□□ -1.01
SHMT2-230ENST00000557427 LYRM9A8MSI8 78 aa8.71□□□□□ -1.02
SHMT2-230ENST00000557427 M0QY20 66 aa8.71□□□□□ -1.02
SHMT2-230ENST00000557427 VCYO14598 125 aa8.71□□□□□ -1.02
SHMT2-230ENST00000557427 HNRNPA3P51991 378 aaKnown RBP8.71□□□□□ -1.02
SHMT2-230ENST00000557427 KRTAP10-2P60368 255 aa8.71□□□□□ -1.02
SHMT2-230ENST00000557427 ZNF56Q15929 161 aa8.71□□□□□ -1.02
SHMT2-230ENST00000557427 Q6ZN92 141 aa8.71□□□□□ -1.02
SHMT2-230ENST00000557427 C11orf72Q8NBR9 251 aa8.71□□□□□ -1.02
SHMT2-230ENST00000557427 NOP10Q9NPE3 64 aaKnown RBP8.71□□□□□ -1.02
SHMT2-230ENST00000557427 PLAC8L1A1L4L8 177 aa8.7□□□□□ -1.02
SHMT2-230ENST00000557427 F5H768 121 aa8.7□□□□□ -1.02
SHMT2-230ENST00000557427 H7C1H1 209 aa8.7□□□□□ -1.02
SHMT2-230ENST00000557427 ODF1Q14990 250 aa8.7□□□□□ -1.02
SHMT2-230ENST00000557427 FAM74A4Q5TZK3 123 aa8.7□□□□□ -1.02
SHMT2-230ENST00000557427 C16orf74Q96GX8 76 aa8.7□□□□□ -1.02
SHMT2-230ENST00000557427 PMCHL2Q9BQD1 86 aa8.7□□□□□ -1.02
SHMT2-230ENST00000557427 SNHG12Q9BXW3 62 aa8.7□□□□□ -1.02
SHMT2-230ENST00000557427 MRPS16Q9Y3D3 137 aaKnown RBP8.7□□□□□ -1.02
SHMT2-230ENST00000557427 TRAV12-1A0A0B4J245 112 aa8.69□□□□□ -1.02
SHMT2-230ENST00000557427 TRBV27A0A0K0K1C4 114 aa8.69□□□□□ -1.02
SHMT2-230ENST00000557427 BORCS8-MEF2BH3BNR1 382 aaPredicted RBP8.69□□□□□ -1.02
SHMT2-230ENST00000557427 EREGO14944 169 aa8.69□□□□□ -1.02
SHMT2-230ENST00000557427 PRSS1P07477 247 aa8.69□□□□□ -1.02
SHMT2-230ENST00000557427 UFSP1Q6NVU6 142 aa8.69□□□□□ -1.02
SHMT2-230ENST00000557427 SDHAF1A6NFY7 115 aa8.68□□□□□ -1.02
SHMT2-230ENST00000557427 RHODO00212 210 aa8.68□□□□□ -1.02
SHMT2-230ENST00000557427 SLC25A34Q6PIV7 304 aa8.68□□□□□ -1.02
SHMT2-230ENST00000557427 C2orf66Q6UXQ4 117 aa8.68□□□□□ -1.02
SHMT2-230ENST00000557427 C6orf223Q8N319 242 aa8.68□□□□□ -1.02
SHMT2-230ENST00000557427 TMEM263Q8WUH6 116 aaKnown RBP8.68□□□□□ -1.02
SHMT2-230ENST00000557427 SCGB3A1Q96QR1 104 aa8.68□□□□□ -1.02
SHMT2-230ENST00000557427 KIR2DL4Q99706 377 aa8.68□□□□□ -1.02
SHMT2-230ENST00000557427 A0A087WX48 190 aa8.67□□□□□ -1.02
SHMT2-230ENST00000557427 RS1O15537 224 aa8.67□□□□□ -1.02
Retrieved 100 of 20,778 RNA–protein pairs in 73.6 ms