RNA–Protein interactions for RNA: ENST00000553868.1

SHMT2-208, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 2

Gene SHMT2, Length 941 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-208ENST00000553868 PRO0255Q9UI72 69 aa10.17□□□□□ -0.78
SHMT2-208ENST00000553868 KLK5Q9Y337 293 aaPredicted RBP10.17□□□□□ -0.78
SHMT2-208ENST00000553868 A0A0J9YWU9 116 aa10.16□□□□□ -0.78
SHMT2-208ENST00000553868 TRBV27A0A0K0K1C4 114 aa10.16□□□□□ -0.78
SHMT2-208ENST00000553868 LINC01546A6NGU7 62 aa10.16□□□□□ -0.78
SHMT2-208ENST00000553868 G0S2P27469 103 aa10.16□□□□□ -0.78
SHMT2-208ENST00000553868 AMTP48728 403 aa10.16□□□□□ -0.78
SHMT2-208ENST00000553868 POLR2KP53803 58 aaKnown RBP10.16□□□□□ -0.78
SHMT2-208ENST00000553868 LINC00310P59036 64 aa10.16□□□□□ -0.78
SHMT2-208ENST00000553868 ORMDL2Q53FV1 153 aa10.16□□□□□ -0.78
SHMT2-208ENST00000553868 PDZD11Q5EBL8 140 aa10.16□□□□□ -0.78
SHMT2-208ENST00000553868 NEXN-AS1Q8NBZ9 246 aa10.16□□□□□ -0.78
SHMT2-208ENST00000553868 HHLA3Q9XRX5 114 aa10.16□□□□□ -0.78
SHMT2-208ENST00000553868 IGLV2-18A0A075B6J9 118 aa10.15□□□□□ -0.78
SHMT2-208ENST00000553868 TRBV7-3A0A075B6L6 115 aa10.15□□□□□ -0.78
SHMT2-208ENST00000553868 I3L3M4 83 aa10.15□□□□□ -0.78
SHMT2-208ENST00000553868 NUPR1O60356 82 aa10.15□□□□□ -0.78
SHMT2-208ENST00000553868 P0DMU3 169 aa10.15□□□□□ -0.78
SHMT2-208ENST00000553868 FAM231AP0DMU4 169 aa10.15□□□□□ -0.78
SHMT2-208ENST00000553868 FAM231CP0DMU5 169 aa10.15□□□□□ -0.78
SHMT2-208ENST00000553868 LAGE3Q14657 143 aa10.15□□□□□ -0.78
SHMT2-208ENST00000553868 URB1-AS1Q96HZ7 61 aa10.15□□□□□ -0.78
SHMT2-208ENST00000553868 FCER1GP30273 86 aa10.14□□□□□ -0.79
SHMT2-208ENST00000553868 C12orf74Q32Q52 190 aa10.14□□□□□ -0.79
SHMT2-208ENST00000553868 ZNRF2Q8NHG8 242 aa10.14□□□□□ -0.79
SHMT2-208ENST00000553868 C11orf45Q8TAV5 145 aa10.14□□□□□ -0.79
SHMT2-208ENST00000553868 APOBP04114 4563 aaKnown RBP10.13□□□□□ -0.79
SHMT2-208ENST00000553868 LINC01549A6NIU2 74 aa10.13□□□□□ -0.79
SHMT2-208ENST00000553868 F5H768 121 aa10.13□□□□□ -0.79
SHMT2-208ENST00000553868 PAX4O43316 350 aa10.13□□□□□ -0.79
SHMT2-208ENST00000553868 FABP4P15090 132 aa10.13□□□□□ -0.79
SHMT2-208ENST00000553868 CRYBA4P53673 196 aa10.13□□□□□ -0.79
SHMT2-208ENST00000553868 LINC00336Q6ZUF6 198 aa10.13□□□□□ -0.79
SHMT2-208ENST00000553868 DAZ4Q86SG3 579 aaKnown RBP10.13□□□□□ -0.79
SHMT2-208ENST00000553868 HIST1H2BLQ99880 126 aa10.13□□□□□ -0.79
SHMT2-208ENST00000553868 DAZ3Q9NR90 486 aaKnown RBP10.13□□□□□ -0.79
SHMT2-208ENST00000553868 LRP1BQ9NZR2 4599 aa10.13□□□□□ -0.79
SHMT2-208ENST00000553868 NACAE9PAV3 2078 aa10.12□□□□□ -0.79
SHMT2-208ENST00000553868 IGHV1-24A0A0C4DH33 117 aa10.12□□□□□ -0.79
SHMT2-208ENST00000553868 GAGE12JA6NER3 117 aa10.12□□□□□ -0.79
SHMT2-208ENST00000553868 NUDT3O95989 172 aa10.12□□□□□ -0.79
SHMT2-208ENST00000553868 HBDP02042 147 aa10.12□□□□□ -0.79
SHMT2-208ENST00000553868 HTN3P15516 51 aa10.12□□□□□ -0.79
SHMT2-208ENST00000553868 GAGE1Q13065 139 aa10.12□□□□□ -0.79
SHMT2-208ENST00000553868 GAGE4Q13068 117 aa10.12□□□□□ -0.79
SHMT2-208ENST00000553868 GAGE5Q13069 117 aa10.12□□□□□ -0.79
SHMT2-208ENST00000553868 GAGE13Q4V321 117 aa10.12□□□□□ -0.79
SHMT2-208ENST00000553868 LOC105371267A0A1B0GV96 52 aa10.11□□□□□ -0.79
SHMT2-208ENST00000553868 UBE2D3P61077 147 aa10.11□□□□□ -0.79
SHMT2-208ENST00000553868 UBE2D2P62837 147 aa10.11□□□□□ -0.79
SHMT2-208ENST00000553868 COTL1Q14019 142 aa10.11□□□□□ -0.79
SHMT2-208ENST00000553868 FAM19A2Q8N3H0 131 aa10.11□□□□□ -0.79
SHMT2-208ENST00000553868 HSPB8Q9UJY1 196 aa10.11□□□□□ -0.79
SHMT2-208ENST00000553868 DMBT1Q9UGM3 2413 aaPredicted RBP10.11□□□□□ -0.79
SHMT2-208ENST00000553868 TMEM97Q5BJF2 176 aa10.1□□□□□ -0.79
SHMT2-208ENST00000553868 NEGR1Q7Z3B1 354 aa10.1□□□□□ -0.79
SHMT2-208ENST00000553868 SH2D6Q7Z4S9 175 aa10.1□□□□□ -0.79
SHMT2-208ENST00000553868 MAPKAPK5-AS1Q8N8E1 139 aa10.1□□□□□ -0.79
SHMT2-208ENST00000553868 PHLDA1Q8WV24 401 aaPredicted RBP10.1□□□□□ -0.79
SHMT2-208ENST00000553868 PRSS29PA6NIE9 313 aa10.09□□□□□ -0.79
SHMT2-208ENST00000553868 IFITM10A6NMD0 228 aa10.09□□□□□ -0.79
SHMT2-208ENST00000553868 LEPROTL1O95214 131 aa10.09□□□□□ -0.79
SHMT2-208ENST00000553868 TSHBP01222 138 aa10.09□□□□□ -0.79
SHMT2-208ENST00000553868 GYPEP15421 78 aa10.09□□□□□ -0.79
SHMT2-208ENST00000553868 BTF3P20290 206 aaKnown RBP10.09□□□□□ -0.79
SHMT2-208ENST00000553868 PMCHL1Q16048 86 aa10.09□□□□□ -0.79
SHMT2-208ENST00000553868 H3BNG1 76 aa10.08□□□□□ -0.8
SHMT2-208ENST00000553868 AKR1D1P51857 326 aa10.08□□□□□ -0.8
SHMT2-208ENST00000553868 Q6ZTC4 211 aa10.08□□□□□ -0.8
SHMT2-208ENST00000553868 Q9UF83 564 aa10.08□□□□□ -0.8
SHMT2-208ENST00000553868 CYSLTR1Q9Y271 337 aa10.08□□□□□ -0.8
SHMT2-208ENST00000553868 TRAV26-1A0A087WT03 109 aa10.07□□□□□ -0.8
SHMT2-208ENST00000553868 TRAV10A0A0B4J240 114 aa10.07□□□□□ -0.8
SHMT2-208ENST00000553868 LOC100131303A0A0U1RQF7 123 aa10.07□□□□□ -0.8
SHMT2-208ENST00000553868 ATP5LO75964 103 aa10.07□□□□□ -0.8
SHMT2-208ENST00000553868 LINC00694P0DN24 101 aa10.07□□□□□ -0.8
SHMT2-208ENST00000553868 NANOS2P60321 138 aaKnown RBP10.07□□□□□ -0.8
SHMT2-208ENST00000553868 MRPL23Q16540 153 aaKnown RBP10.07□□□□□ -0.8
SHMT2-208ENST00000553868 OR10D4PQ8NGN7 298 aa10.07□□□□□ -0.8
SHMT2-208ENST00000553868 ATP6V0E2Q8NHE4 81 aa10.07□□□□□ -0.8
SHMT2-208ENST00000553868 GTSF1LQ9H1H1 148 aa10.07□□□□□ -0.8
SHMT2-208ENST00000553868 ICOSQ9Y6W8 199 aa10.07□□□□□ -0.8
SHMT2-208ENST00000553868 A0A096LNJ9 63 aa10.06□□□□□ -0.8
SHMT2-208ENST00000553868 DEFB131BA0A096LNP1 70 aa10.06□□□□□ -0.8
SHMT2-208ENST00000553868 IGHV3-38A0A0C4DH36 116 aa10.06□□□□□ -0.8
SHMT2-208ENST00000553868 A0A0J9YY99 117 aa10.06□□□□□ -0.8
SHMT2-208ENST00000553868 SMAGPQ0VAQ4 97 aa10.06□□□□□ -0.8
SHMT2-208ENST00000553868 TOMM6Q96B49 74 aa10.06□□□□□ -0.8
SHMT2-208ENST00000553868 VSIG2Q96IQ7 327 aa10.06□□□□□ -0.8
SHMT2-208ENST00000553868 RTL8CO15255 209 aa10.05□□□□□ -0.8
SHMT2-208ENST00000553868 C2orf66Q6UXQ4 117 aa10.05□□□□□ -0.8
SHMT2-208ENST00000553868 MAP1LC3CQ9BXW4 147 aa10.05□□□□□ -0.8
SHMT2-208ENST00000553868 C20orf203Q8NBC4 194 aa10.04□□□□□ -0.8
SHMT2-208ENST00000553868 SCGB3A1Q96QR1 104 aa10.04□□□□□ -0.8
SHMT2-208ENST00000553868 TRBV25-1A0A075B6N4 114 aa10.03□□□□□ -0.8
SHMT2-208ENST00000553868 KRTDAPP60985 99 aa10.03□□□□□ -0.8
SHMT2-208ENST00000553868 ERASQ7Z444 233 aa10.03□□□□□ -0.8
SHMT2-208ENST00000553868 IFI27L1Q96BM0 104 aa10.03□□□□□ -0.8
SHMT2-208ENST00000553868 TMEM243Q9BU79 118 aa10.03□□□□□ -0.8
SHMT2-208ENST00000553868 DNAH5Q8TE73 4624 aa10.02□□□□□ -0.81
Retrieved 100 of 20,778 RNA–protein pairs in 86.1 ms