RNA–Protein interactions for RNA: ENST00000552909.5

LIMA1-216, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMA1, Length 2,162 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-216ENST00000552909 H3BMM0 161 aa5.71□□□□□ -1.5
LIMA1-216ENST00000552909 LINC01620Q4KN68 170 aa5.71□□□□□ -1.5
LIMA1-216ENST00000552909 C2orf66Q6UXQ4 117 aa5.71□□□□□ -1.5
LIMA1-216ENST00000552909 SLC25A29Q8N8R3 303 aa5.71□□□□□ -1.5
LIMA1-216ENST00000552909 UBE2WQ96B02 151 aa5.71□□□□□ -1.5
LIMA1-216ENST00000552909 SLC50A1Q9BRV3 221 aa5.71□□□□□ -1.5
LIMA1-216ENST00000552909 IGKV3D-20A0A0C4DH25 116 aa5.7□□□□□ -1.5
LIMA1-216ENST00000552909 LGALS9O00182 355 aa5.7□□□□□ -1.5
LIMA1-216ENST00000552909 IGLV1-40P01703 118 aa5.7□□□□□ -1.5
LIMA1-216ENST00000552909 PF4V1P10720 104 aa5.7□□□□□ -1.5
LIMA1-216ENST00000552909 MFAP4P55083 255 aa5.7□□□□□ -1.5
LIMA1-216ENST00000552909 DEFB136Q30KP8 78 aa5.7□□□□□ -1.5
LIMA1-216ENST00000552909 OXLD1Q5BKU9 147 aa5.7□□□□□ -1.5
LIMA1-216ENST00000552909 PAPPA-AS1Q5QFB9 102 aa5.7□□□□□ -1.5
LIMA1-216ENST00000552909 SPANXN1Q5VSR9 72 aa5.7□□□□□ -1.5
LIMA1-216ENST00000552909 IGFL4Q6B9Z1 124 aa5.7□□□□□ -1.5
LIMA1-216ENST00000552909 RNF152Q8N8N0 203 aa5.7□□□□□ -1.5
LIMA1-216ENST00000552909 LINC01600Q96MT4 127 aa5.7□□□□□ -1.5
LIMA1-216ENST00000552909 LINC01587Q99440 93 aa5.7□□□□□ -1.5
LIMA1-216ENST00000552909 CHCHD5Q9BSY4 110 aa5.7□□□□□ -1.5
LIMA1-216ENST00000552909 ZNF580Q9UK33 172 aa5.7□□□□□ -1.5
LIMA1-216ENST00000552909 IGHV3-33P01772 117 aa5.7□□□□□ -1.5
LIMA1-216ENST00000552909 ELANEP08246 267 aa5.7□□□□□ -1.5
LIMA1-216ENST00000552909 SUMO2P61956 95 aaKnown RBP5.7□□□□□ -1.5
LIMA1-216ENST00000552909 C15orf32Q32M92 178 aa5.7□□□□□ -1.5
LIMA1-216ENST00000552909 DNAJC30Q96LL9 226 aa5.7□□□□□ -1.5
LIMA1-216ENST00000552909 C21orf62Q9NYP8 219 aa5.7□□□□□ -1.5
LIMA1-216ENST00000552909 CSDC2Q9Y534 153 aaKnown RBP5.7□□□□□ -1.5
LIMA1-216ENST00000552909 IGHV4-4A0A075B6R2 117 aa5.69□□□□□ -1.5
LIMA1-216ENST00000552909 IGHV7-4-1A0A0J9YVY3 117 aa5.69□□□□□ -1.5
LIMA1-216ENST00000552909 TRBV10-2A0A0K0K1G8 114 aa5.69□□□□□ -1.5
LIMA1-216ENST00000552909 A4D1N5 150 aa5.69□□□□□ -1.5
LIMA1-216ENST00000552909 H7C2G1 150 aa5.69□□□□□ -1.5
LIMA1-216ENST00000552909 DUSP14O95147 198 aaKnown RBP5.69□□□□□ -1.5
LIMA1-216ENST00000552909 Q1RN00 199 aa5.69□□□□□ -1.5
LIMA1-216ENST00000552909 C5orf47Q569G3 176 aa5.69□□□□□ -1.5
LIMA1-216ENST00000552909 A0A0B4J2C4 111 aa5.69□□□□□ -1.5
LIMA1-216ENST00000552909 C11orf86A6NJI1 115 aa5.69□□□□□ -1.5
LIMA1-216ENST00000552909 PF4P02776 101 aa5.69□□□□□ -1.5
LIMA1-216ENST00000552909 ZNF56Q15929 161 aa5.69□□□□□ -1.5
LIMA1-216ENST00000552909 KLK9Q2XQG4 91 aa5.69□□□□□ -1.5
LIMA1-216ENST00000552909 WFDC9Q8NEX5 89 aa5.69□□□□□ -1.5
LIMA1-216ENST00000552909 TMEM263Q8WUH6 116 aaKnown RBP5.69□□□□□ -1.5
LIMA1-216ENST00000552909 C11orf21Q9P2W6 132 aa5.69□□□□□ -1.5
LIMA1-216ENST00000552909 KLK9Q9UKQ9 250 aa5.69□□□□□ -1.5
LIMA1-216ENST00000552909 IGLV4-69A0A075B6H9 119 aa5.68□□□□□ -1.5
LIMA1-216ENST00000552909 TRBV7-7A0A0K0K1E9 115 aa5.68□□□□□ -1.5
LIMA1-216ENST00000552909 RBAKDNA6NC62 111 aa5.68□□□□□ -1.5
LIMA1-216ENST00000552909 F8W735 103 aaPredicted RBP5.68□□□□□ -1.5
LIMA1-216ENST00000552909 CCL24O00175 119 aa5.68□□□□□ -1.5
LIMA1-216ENST00000552909 CLEC19AQ6UXS0 136 aa5.68□□□□□ -1.5
LIMA1-216ENST00000552909 LINC00482Q8N8I6 264 aa5.68□□□□□ -1.5
LIMA1-216ENST00000552909 SMAD5-AS1Q9Y6J3 95 aa5.68□□□□□ -1.5
LIMA1-216ENST00000552909 IGHV3-35A0A0C4DH35 117 aa5.67□□□□□ -1.5
LIMA1-216ENST00000552909 FAM240AA0A1B0GVK7 77 aa5.67□□□□□ -1.5
LIMA1-216ENST00000552909 PRAC2D3DTV9 90 aa5.67□□□□□ -1.5
LIMA1-216ENST00000552909 IGHV3-11P01762 117 aa5.67□□□□□ -1.5
LIMA1-216ENST00000552909 PRB2P02812 416 aaPredicted RBP5.67□□□□□ -1.5
LIMA1-216ENST00000552909 CRYGDP07320 174 aa5.67□□□□□ -1.5
LIMA1-216ENST00000552909 CTSGP08311 255 aa5.67□□□□□ -1.5
LIMA1-216ENST00000552909 LINC00694P0DN24 101 aa5.67□□□□□ -1.5
LIMA1-216ENST00000552909 LGALS3P17931 250 aaKnown RBP5.67□□□□□ -1.5
LIMA1-216ENST00000552909 C2orf82Q6UX34 121 aa5.67□□□□□ -1.5
LIMA1-216ENST00000552909 EEF1AKMT3Q96AZ1 226 aa5.67□□□□□ -1.5
LIMA1-216ENST00000552909 TMEM101Q96IK0 257 aa5.67□□□□□ -1.5
LIMA1-216ENST00000552909 UBE2E2Q96LR5 201 aa5.67□□□□□ -1.5
LIMA1-216ENST00000552909 TRBV7-1A0A0A6YYK4 115 aa5.67□□□□□ -1.5
LIMA1-216ENST00000552909 TRAV16A0A0A6YYK6 109 aaPredicted RBP5.67□□□□□ -1.5
LIMA1-216ENST00000552909 FAM223BA6NKX1 122 aa5.67□□□□□ -1.5
LIMA1-216ENST00000552909 M0R2P5 195 aa5.67□□□□□ -1.5
LIMA1-216ENST00000552909 EMP1P54849 157 aa5.67□□□□□ -1.5
LIMA1-216ENST00000552909 TSPEAR-AS2P59090 65 aa5.67□□□□□ -1.5
LIMA1-216ENST00000552909 FAM223AQ8IWN6 122 aa5.67□□□□□ -1.5
LIMA1-216ENST00000552909 C4orf3Q8WVX3 66 aa5.67□□□□□ -1.5
LIMA1-216ENST00000552909 SPXQ9BT56 116 aa5.67□□□□□ -1.5
LIMA1-216ENST00000552909 J3QQQ9 107 aa5.66□□□□□ -1.5
LIMA1-216ENST00000552909 EIF4EBP3O60516 100 aaPredicted RBP5.66□□□□□ -1.5
LIMA1-216ENST00000552909 PMVKQ15126 192 aa5.66□□□□□ -1.5
LIMA1-216ENST00000552909 BEAN1Q3B7T3 259 aa5.66□□□□□ -1.5
LIMA1-216ENST00000552909 TMEM170BQ5T4T1 132 aa5.66□□□□□ -1.5
LIMA1-216ENST00000552909 C9orf153Q5TBE3 101 aa5.66□□□□□ -1.5
LIMA1-216ENST00000552909 RPL39LQ96EH5 51 aaKnown RBP5.66□□□□□ -1.5
LIMA1-216ENST00000552909 USMG5Q96IX5 58 aa5.66□□□□□ -1.5
LIMA1-216ENST00000552909 CCDC140Q96MF4 163 aa5.66□□□□□ -1.5
LIMA1-216ENST00000552909 COL7A1Q02388 2944 aa5.66□□□□□ -1.5
LIMA1-216ENST00000552909 TRBV30A0A0K0K1B3 111 aa5.66□□□□□ -1.5
LIMA1-216ENST00000552909 H3BUA1 57 aa5.66□□□□□ -1.5
LIMA1-216ENST00000552909 RNF182Q8N6D2 247 aa5.66□□□□□ -1.5
LIMA1-216ENST00000552909 AMELXQ99217 191 aa5.66□□□□□ -1.5
LIMA1-216ENST00000552909 IGHV3OR16-8A0A075B7F1 116 aa5.65□□□□□ -1.5
LIMA1-216ENST00000552909 FAM236AA0A1B0GUQ0 79 aa5.65□□□□□ -1.5
LIMA1-216ENST00000552909 FAM236BA0A1B0GV22 79 aa5.65□□□□□ -1.5
LIMA1-216ENST00000552909 H3BT86 120 aa5.65□□□□□ -1.5
LIMA1-216ENST00000552909 M0R381 172 aa5.65□□□□□ -1.5
LIMA1-216ENST00000552909 C3orf22Q8N5N4 141 aa5.65□□□□□ -1.5
LIMA1-216ENST00000552909 C14orf178Q8N769 122 aaPredicted RBP5.65□□□□□ -1.5
LIMA1-216ENST00000552909 SPANXDQ9BXN6 97 aa5.65□□□□□ -1.5
LIMA1-216ENST00000552909 AGPAT4-IT1Q9H0P7 198 aa5.65□□□□□ -1.5
LIMA1-216ENST00000552909 DPH3P1Q9H4G8 78 aa5.65□□□□□ -1.5
LIMA1-216ENST00000552909 SORL1Q92673 2214 aa5.65□□□□□ -1.5
Retrieved 100 of 20,778 RNA–protein pairs in 126.7 ms