RNA–Protein interactions for RNA: ENST00000552491.5

LIMA1-212, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS ALT2 TSL 2 BASIC

Gene LIMA1, Length 2,652 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-212ENST00000552491 AKAP9Q99996 3911 aa3.98□□□□□ -1.77
LIMA1-212ENST00000552491 PKD1L2Q7Z442 2459 aa3.98□□□□□ -1.77
LIMA1-212ENST00000552491 IGHV1OR15-1A0A075B7D0 117 aa3.98□□□□□ -1.77
LIMA1-212ENST00000552491 TRAV8-3A0A0A6YYJ7 113 aa3.98□□□□□ -1.77
LIMA1-212ENST00000552491 A0A0J9YXY3 114 aa3.98□□□□□ -1.77
LIMA1-212ENST00000552491 A8MZ25 164 aa3.98□□□□□ -1.77
LIMA1-212ENST00000552491 M0R2P5 195 aa3.98□□□□□ -1.77
LIMA1-212ENST00000552491 RBMY1A1P0DJD3 496 aaKnown RBP3.98□□□□□ -1.77
LIMA1-212ENST00000552491 RBMY1CP0DJD4 496 aa3.98□□□□□ -1.77
LIMA1-212ENST00000552491 LY6DQ14210 128 aa3.98□□□□□ -1.77
LIMA1-212ENST00000552491 RBMY1FQ15415 496 aaKnown RBP3.98□□□□□ -1.77
LIMA1-212ENST00000552491 Q6ZSV7 163 aa3.98□□□□□ -1.77
LIMA1-212ENST00000552491 LINC01600Q96MT4 127 aa3.98□□□□□ -1.77
LIMA1-212ENST00000552491 LITAFQ99732 161 aa3.98□□□□□ -1.77
LIMA1-212ENST00000552491 KMT2BQ9UMN6 2715 aaPredicted RBP3.98□□□□□ -1.77
LIMA1-212ENST00000552491 IGHV3-73A0A0B4J1V6 119 aa3.98□□□□□ -1.77
LIMA1-212ENST00000552491 IGHV3-30-3P0DP02 117 aa3.98□□□□□ -1.77
LIMA1-212ENST00000552491 ATXN8Q156A1 80 aa3.98□□□□□ -1.77
LIMA1-212ENST00000552491 ADAMTSL4-AS1Q5T5F5 129 aa3.98□□□□□ -1.77
LIMA1-212ENST00000552491 ZFAND6Q6FIF0 208 aa3.98□□□□□ -1.77
LIMA1-212ENST00000552491 SPXQ9BT56 116 aa3.98□□□□□ -1.77
LIMA1-212ENST00000552491 KRTAP17-1Q9BYP8 105 aa3.98□□□□□ -1.77
LIMA1-212ENST00000552491 BEX4Q9NWD9 120 aaPredicted RBP3.98□□□□□ -1.77
LIMA1-212ENST00000552491 USP9YO00507 2555 aaPredicted RBP3.97□□□□□ -1.77
LIMA1-212ENST00000552491 TRBV30A0A0K0K1B3 111 aa3.97□□□□□ -1.77
LIMA1-212ENST00000552491 CRLF1O75462 422 aa3.97□□□□□ -1.77
LIMA1-212ENST00000552491 UTP20O75691 2785 aaKnown RBP3.97□□□□□ -1.77
LIMA1-212ENST00000552491 SNRPD3P62318 126 aaKnown RBP3.97□□□□□ -1.77
LIMA1-212ENST00000552491 TEX29Q8N6K0 151 aa3.97□□□□□ -1.77
LIMA1-212ENST00000552491 NTN5Q8WTR8 489 aaPredicted RBP3.97□□□□□ -1.77
LIMA1-212ENST00000552491 DUX5Q96PT3 197 aa3.97□□□□□ -1.77
LIMA1-212ENST00000552491 CITED1Q99966 193 aa3.97□□□□□ -1.77
LIMA1-212ENST00000552491 PYGO1Q9Y3Y4 419 aa3.97□□□□□ -1.77
LIMA1-212ENST00000552491 IGHV4-30-2A0A087WSY4 118 aa3.97□□□□□ -1.77
LIMA1-212ENST00000552491 TEX49A0A1B0GTD5 131 aa3.97□□□□□ -1.77
LIMA1-212ENST00000552491 K7EQG2 157 aa3.97□□□□□ -1.77
LIMA1-212ENST00000552491 TRIAP1O43715 76 aa3.97□□□□□ -1.77
LIMA1-212ENST00000552491 NHLRC4P0CG21 123 aaPredicted RBP3.97□□□□□ -1.77
LIMA1-212ENST00000552491 PSMB8P28062 276 aa3.97□□□□□ -1.77
LIMA1-212ENST00000552491 Q1RN00 199 aa3.97□□□□□ -1.77
LIMA1-212ENST00000552491 LINC01620Q4KN68 170 aa3.97□□□□□ -1.77
LIMA1-212ENST00000552491 FAM208BQ5VWN6 2430 aa3.96□□□□□ -1.77
LIMA1-212ENST00000552491 FLNCQ14315 2725 aa3.96□□□□□ -1.78
LIMA1-212ENST00000552491 MXRA5Q9NR99 2828 aa3.96□□□□□ -1.78
LIMA1-212ENST00000552491 TRAV4A0A0B4J268 109 aa3.96□□□□□ -1.78
LIMA1-212ENST00000552491 KNCNA6PVL3 124 aa3.96□□□□□ -1.78
LIMA1-212ENST00000552491 HTN1P15515 57 aa3.96□□□□□ -1.78
LIMA1-212ENST00000552491 NPC2P61916 151 aa3.96□□□□□ -1.78
LIMA1-212ENST00000552491 MRPS36P82909 103 aaKnown RBP3.96□□□□□ -1.78
LIMA1-212ENST00000552491 Q6ZSN1 163 aa3.96□□□□□ -1.78
LIMA1-212ENST00000552491 RNF152Q8N8N0 203 aa3.96□□□□□ -1.78
LIMA1-212ENST00000552491 C10orf105Q8TEF2 133 aa3.96□□□□□ -1.78
LIMA1-212ENST00000552491 ANAPC13Q9BS18 74 aa3.96□□□□□ -1.78
LIMA1-212ENST00000552491 PIMREGQ9BSJ6 248 aa3.96□□□□□ -1.78
LIMA1-212ENST00000552491 EDA2RQ9HAV5 297 aa3.96□□□□□ -1.78
LIMA1-212ENST00000552491 TRBV10-2A0A0K0K1G8 114 aa3.96□□□□□ -1.78
LIMA1-212ENST00000552491 RPL13AP40429 203 aaKnown RBP3.96□□□□□ -1.78
LIMA1-212ENST00000552491 TIMM21Q9BVV7 248 aa3.96□□□□□ -1.78
LIMA1-212ENST00000552491 CFAP46Q8IYW2 2715 aa3.95□□□□□ -1.78
LIMA1-212ENST00000552491 TRGV11A0A075B6L2 103 aa3.95□□□□□ -1.78
LIMA1-212ENST00000552491 IGHV1-58A0A0C4DH39 117 aa3.95□□□□□ -1.78
LIMA1-212ENST00000552491 IGHV4-59P01825 116 aa3.95□□□□□ -1.78
LIMA1-212ENST00000552491 CD28P10747 220 aa3.95□□□□□ -1.78
LIMA1-212ENST00000552491 SYNJ2BPP57105 145 aa3.95□□□□□ -1.78
LIMA1-212ENST00000552491 SPANXDQ9BXN6 97 aa3.95□□□□□ -1.78
LIMA1-212ENST00000552491 SPANXCQ9NY87 97 aa3.95□□□□□ -1.78
LIMA1-212ENST00000552491 USP9XQ93008 2570 aaPredicted RBP3.95□□□□□ -1.78
LIMA1-212ENST00000552491 POLQO75417 2590 aa3.95□□□□□ -1.78
LIMA1-212ENST00000552491 SNCGO76070 127 aa3.95□□□□□ -1.78
LIMA1-212ENST00000552491 PRSS2P07478 247 aa3.95□□□□□ -1.78
LIMA1-212ENST00000552491 GNLYP22749 145 aa3.95□□□□□ -1.78
LIMA1-212ENST00000552491 GAGE2BQ13066 116 aa3.95□□□□□ -1.78
LIMA1-212ENST00000552491 GAGE2EQ4V326 116 aa3.95□□□□□ -1.78
LIMA1-212ENST00000552491 GAGE2DQ9UEU5 116 aa3.95□□□□□ -1.78
LIMA1-212ENST00000552491 HMCN1Q96RW7 5635 aa3.94□□□□□ -1.78
LIMA1-212ENST00000552491 ZNF469Q96JG9 3925 aaPredicted RBP3.94□□□□□ -1.78
LIMA1-212ENST00000552491 IGKV2D-29A0A075B6S2 120 aaPredicted RBP3.94□□□□□ -1.78
LIMA1-212ENST00000552491 NBPF19A0A087WUL8 3843 aa3.94□□□□□ -1.78
LIMA1-212ENST00000552491 TINCRA0A1B0GVN0 87 aa3.94□□□□□ -1.78
LIMA1-212ENST00000552491 IGKV2-29A2NJV5 120 aaPredicted RBP3.94□□□□□ -1.78
LIMA1-212ENST00000552491 TMEM89A2RUT3 159 aa3.94□□□□□ -1.78
LIMA1-212ENST00000552491 RBMY1BA6NDE4 496 aaKnown RBP3.94□□□□□ -1.78
LIMA1-212ENST00000552491 RBMY1EA6NEQ0 496 aaKnown RBP3.94□□□□□ -1.78
LIMA1-212ENST00000552491 MSMBP08118 114 aa3.94□□□□□ -1.78
LIMA1-212ENST00000552491 RBMY1DP0C7P1 496 aaKnown RBP3.94□□□□□ -1.78
LIMA1-212ENST00000552491 GAGE5Q13069 117 aa3.94□□□□□ -1.78
LIMA1-212ENST00000552491 GAGE6Q13070 117 aa3.94□□□□□ -1.78
LIMA1-212ENST00000552491 KIRREL3-AS3Q8N7Y1 241 aaPredicted RBP3.94□□□□□ -1.78
LIMA1-212ENST00000552491 DAND5Q8N907 189 aa3.94□□□□□ -1.78
LIMA1-212ENST00000552491 CLEC2BQ92478 149 aa3.94□□□□□ -1.78
LIMA1-212ENST00000552491 CHCHD7Q9BUK0 85 aa3.94□□□□□ -1.78
LIMA1-212ENST00000552491 NDUFA12Q9UI09 145 aa3.94□□□□□ -1.78
LIMA1-212ENST00000552491 ICOSQ9Y6W8 199 aa3.94□□□□□ -1.78
LIMA1-212ENST00000552491 CHD6Q8TD26 2715 aa3.94□□□□□ -1.78
LIMA1-212ENST00000552491 C2CD3Q4AC94 2353 aa3.94□□□□□ -1.78
LIMA1-212ENST00000552491 TRAV8-4A0A0B4J246 113 aa3.94□□□□□ -1.78
LIMA1-212ENST00000552491 H7C423 109 aa3.94□□□□□ -1.78
LIMA1-212ENST00000552491 COX6CP09669 75 aa3.94□□□□□ -1.78
LIMA1-212ENST00000552491 MIAQ16674 131 aa3.94□□□□□ -1.78
LIMA1-212ENST00000552491 DEFB112Q30KQ8 113 aa3.94□□□□□ -1.78
Retrieved 100 of 20,778 RNA–protein pairs in 65.6 ms