RNA–Protein interactions for RNA: ENST00000548259.1

VPS29-204, Transcript of VPS29, retromer complex component, humanhuman

TSL 2

Gene VPS29, Length 563 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-204ENST00000548259 SRSF9Q13242 221 aaKnown RBP eCLIP10.52□□□□□ -0.73
VPS29-204ENST00000548259 AMMECR1LQ6DCA0 310 aa10.52□□□□□ -0.73
VPS29-204ENST00000548259 MLST8Q9BVC4 326 aa10.52□□□□□ -0.73
VPS29-204ENST00000548259 MED28Q9H204 178 aa10.52□□□□□ -0.73
VPS29-204ENST00000548259 NIT2Q9NQR4 276 aa10.52□□□□□ -0.73
VPS29-204ENST00000548259 PAGE4O60829 102 aa10.51□□□□□ -0.73
VPS29-204ENST00000548259 TRGC1P0CF51 173 aa10.5□□□□□ -0.73
VPS29-204ENST00000548259 RPS20P60866 119 aaKnown RBP10.5□□□□□ -0.73
VPS29-204ENST00000548259 FER1L6-AS1Q8NA97 138 aa10.5□□□□□ -0.73
VPS29-204ENST00000548259 CHCHD10Q8WYQ3 142 aaPredicted RBP10.5□□□□□ -0.73
VPS29-204ENST00000548259 ALG5Q9Y673 324 aa10.5□□□□□ -0.73
VPS29-204ENST00000548259 FXYD6-FXYD2A0A087WZ82 144 aa10.49□□□□□ -0.73
VPS29-204ENST00000548259 XKRY2A2RUG3 117 aa10.49□□□□□ -0.73
VPS29-204ENST00000548259 SCO2A0A1W2PP80 73 aa10.48□□□□□ -0.73
VPS29-204ENST00000548259 ZNF664Q8N3J9 261 aa10.48□□□□□ -0.73
VPS29-204ENST00000548259 A0A0U1RQV1 116 aa10.47□□□□□ -0.73
VPS29-204ENST00000548259 F2Z2F3 143 aa10.47□□□□□ -0.73
VPS29-204ENST00000548259 GIPP09681 153 aaPredicted RBP10.47□□□□□ -0.73
VPS29-204ENST00000548259 RNASEKQ6P5S7 137 aaKnown RBP10.47□□□□□ -0.73
VPS29-204ENST00000548259 CARD19Q96LW7 228 aa10.47□□□□□ -0.73
VPS29-204ENST00000548259 TMUB2Q71RG4 321 aa10.46□□□□□ -0.73
VPS29-204ENST00000548259 SFT2D1Q8WV19 159 aa10.46□□□□□ -0.73
VPS29-204ENST00000548259 IGHV1-58A0A0C4DH39 117 aa10.45□□□□□ -0.74
VPS29-204ENST00000548259 H7C423 109 aa10.45□□□□□ -0.74
VPS29-204ENST00000548259 OR2D3Q8NGH3 330 aa10.45□□□□□ -0.74
VPS29-204ENST00000548259 PSORS1C2Q9UIG4 136 aa10.45□□□□□ -0.74
VPS29-204ENST00000548259 TRAV26-2A0A0B4J265 109 aa10.44□□□□□ -0.74
VPS29-204ENST00000548259 ZNF561-AS1K7EIQ3 104 aa10.44□□□□□ -0.74
VPS29-204ENST00000548259 NCR2O95944 276 aa10.44□□□□□ -0.74
VPS29-204ENST00000548259 IGLC6P0CF74 106 aa10.44□□□□□ -0.74
VPS29-204ENST00000548259 Q5BKY6 102 aa10.44□□□□□ -0.74
VPS29-204ENST00000548259 BTF3L4Q96K17 158 aa10.44□□□□□ -0.74
VPS29-204ENST00000548259 RPL35P42766 123 aaKnown RBP10.43□□□□□ -0.74
VPS29-204ENST00000548259 FOXI1Q12951 378 aa10.43□□□□□ -0.74
VPS29-204ENST00000548259 MT-ND6P03923 174 aa10.42□□□□□ -0.74
VPS29-204ENST00000548259 ZNF25P17030 456 aaPredicted RBP10.42□□□□□ -0.74
VPS29-204ENST00000548259 XCL1P47992 114 aa10.42□□□□□ -0.74
VPS29-204ENST00000548259 SYCNQ0VAF6 134 aa10.42□□□□□ -0.74
VPS29-204ENST00000548259 KCNRGQ8N5I3 272 aa10.42□□□□□ -0.74
VPS29-204ENST00000548259 ISOC2Q96AB3 205 aa10.42□□□□□ -0.74
VPS29-204ENST00000548259 TMEM101Q96IK0 257 aa10.42□□□□□ -0.74
VPS29-204ENST00000548259 UMAD1C9J7I0 102 aa10.41□□□□□ -0.74
VPS29-204ENST00000548259 IFNA1P01562 189 aa10.41□□□□□ -0.74
VPS29-204ENST00000548259 APCSP02743 223 aa10.41□□□□□ -0.74
VPS29-204ENST00000548259 NTF3P20783 257 aa10.41□□□□□ -0.74
VPS29-204ENST00000548259 OR5A1Q8NGJ0 315 aa10.41□□□□□ -0.74
VPS29-204ENST00000548259 FAM213BQ8TBF2 198 aa10.41□□□□□ -0.74
VPS29-204ENST00000548259 MBD3L1Q8WWY6 194 aa10.41□□□□□ -0.74
VPS29-204ENST00000548259 LOC107984640A0A0U1RRK4 108 aa10.4□□□□□ -0.74
VPS29-204ENST00000548259 A0A1B0GV50 99 aa10.4□□□□□ -0.74
VPS29-204ENST00000548259 FGF6P10767 208 aa10.4□□□□□ -0.74
VPS29-204ENST00000548259 PTTG1IPP53801 180 aa10.4□□□□□ -0.74
VPS29-204ENST00000548259 IGKV2D-29A0A075B6S2 120 aaPredicted RBP10.39□□□□□ -0.75
VPS29-204ENST00000548259 IGKV2-29A2NJV5 120 aaPredicted RBP10.39□□□□□ -0.75
VPS29-204ENST00000548259 GAGE2BQ13066 116 aa10.39□□□□□ -0.75
VPS29-204ENST00000548259 SS18Q15532 418 aa10.39□□□□□ -0.75
VPS29-204ENST00000548259 BIN3Q9NQY0 253 aa10.39□□□□□ -0.75
VPS29-204ENST00000548259 CCL25O15444 150 aa10.38□□□□□ -0.75
VPS29-204ENST00000548259 CENPWQ5EE01 88 aa10.38□□□□□ -0.75
VPS29-204ENST00000548259 LYZL1Q6UWQ5 148 aa10.38□□□□□ -0.75
VPS29-204ENST00000548259 SMIM15Q7Z3B0 74 aa10.38□□□□□ -0.75
VPS29-204ENST00000548259 DIRC1Q969H9 104 aa10.38□□□□□ -0.75
VPS29-204ENST00000548259 SMIM12Q96EX1 92 aa10.38□□□□□ -0.75
VPS29-204ENST00000548259 LINC00959A0A1B0GUT2 108 aa10.37□□□□□ -0.75
VPS29-204ENST00000548259 ARPC5O15511 151 aa10.37□□□□□ -0.75
VPS29-204ENST00000548259 CAMPP49913 170 aa10.37□□□□□ -0.75
VPS29-204ENST00000548259 EIF5AP63241 154 aaKnown RBP10.37□□□□□ -0.75
VPS29-204ENST00000548259 TWIST1Q15672 202 aa10.37□□□□□ -0.75
VPS29-204ENST00000548259 EIF5AL1Q6IS14 154 aaKnown RBP10.37□□□□□ -0.75
VPS29-204ENST00000548259 TEX261Q6UWH6 196 aa10.37□□□□□ -0.75
VPS29-204ENST00000548259 LINC00526Q96FQ7 95 aa10.37□□□□□ -0.75
VPS29-204ENST00000548259 C19orf71A6NCJ1 209 aa10.36□□□□□ -0.75
VPS29-204ENST00000548259 H2AFB1P0C5Y9 115 aa10.36□□□□□ -0.75
VPS29-204ENST00000548259 GNG4P50150 75 aa10.36□□□□□ -0.75
VPS29-204ENST00000548259 C1orf137Q5JT78 98 aa10.36□□□□□ -0.75
VPS29-204ENST00000548259 Q6ZNX1 250 aa10.36□□□□□ -0.75
VPS29-204ENST00000548259 C9orf62Q8N4C0 152 aa10.36□□□□□ -0.75
VPS29-204ENST00000548259 GATD1Q8NB37 220 aa10.36□□□□□ -0.75
VPS29-204ENST00000548259 MANBALQ9NQG1 85 aa10.36□□□□□ -0.75
VPS29-204ENST00000548259 CYTL1Q9NRR1 136 aa10.36□□□□□ -0.75
VPS29-204ENST00000548259 LPAP08519 4548 aa10.36□□□□□ -0.75
VPS29-204ENST00000548259 MALP21145 153 aa10.35□□□□□ -0.75
VPS29-204ENST00000548259 CD164L2Q6UWJ8 174 aa10.35□□□□□ -0.75
VPS29-204ENST00000548259 TSKUQ8WUA8 353 aa10.35□□□□□ -0.75
VPS29-204ENST00000548259 C11orf52Q96A22 123 aa10.35□□□□□ -0.75
VPS29-204ENST00000548259 IGLV4-69A0A075B6H9 119 aa10.34□□□□□ -0.75
VPS29-204ENST00000548259 PMCHP20382 165 aa10.34□□□□□ -0.75
VPS29-204ENST00000548259 FAM210AQ96ND0 272 aa10.34□□□□□ -0.75
VPS29-204ENST00000548259 KRTAP9-2Q9BYQ4 174 aa10.34□□□□□ -0.75
VPS29-204ENST00000548259 SDHAF1A6NFY7 115 aa10.33□□□□□ -0.76
VPS29-204ENST00000548259 APOMO95445 188 aa10.33□□□□□ -0.76
VPS29-204ENST00000548259 CTRLP40313 264 aa10.33□□□□□ -0.76
VPS29-204ENST00000548259 PRR26Q8N8Z3 221 aa10.33□□□□□ -0.76
VPS29-204ENST00000548259 GNG13Q9P2W3 67 aa10.33□□□□□ -0.76
VPS29-204ENST00000548259 A0A1W2PNN7 141 aa10.32□□□□□ -0.76
VPS29-204ENST00000548259 I3L3M4 83 aa10.32□□□□□ -0.76
VPS29-204ENST00000548259 CCL20P78556 96 aa10.32□□□□□ -0.76
VPS29-204ENST00000548259 PRR4Q16378 134 aa10.32□□□□□ -0.76
VPS29-204ENST00000548259 C9orf116Q5BN46 136 aaPredicted RBP10.32□□□□□ -0.76
VPS29-204ENST00000548259 MRAP2Q96G30 205 aa10.32□□□□□ -0.76
Retrieved 100 of 20,778 RNA–protein pairs in 95.8 ms