RNA–Protein interactions for RNA: ENST00000546211.5

SKP2-208, Transcript of S-phase kinase associated protein 2, human

TSL 5 BASIC

Gene SKP2, Length 1,589 nt, Biotype protein coding, Subcellular localisation Cytosol .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SKP2-208	ENST00000546211	UBE2D2	P62837	147 aa		13.71	□□□□□ -0.21
SKP2-208	ENST00000546211	DAZ4	Q86SG3	579 aa	Known RBP	13.71	□□□□□ -0.21
SKP2-208	ENST00000546211		Q8N976	141 aa		13.71	□□□□□ -0.21
SKP2-208	ENST00000546211	SCGB3A1	Q96QR1	104 aa		13.71	□□□□□ -0.21
SKP2-208	ENST00000546211	DAZ3	Q9NR90	486 aa	Known RBP	13.71	□□□□□ -0.21
SKP2-208	ENST00000546211	BORCS8-MEF2B	H3BNR1	382 aa	Predicted RBP	13.71	□□□□□ -0.22
SKP2-208	ENST00000546211	CDPF1	Q6NVV7	123 aa		13.71	□□□□□ -0.22
SKP2-208	ENST00000546211	SPATA12	Q7Z6I5	190 aa		13.71	□□□□□ -0.22
SKP2-208	ENST00000546211	TM2D3	Q9BRN9	247 aa		13.71	□□□□□ -0.22
SKP2-208	ENST00000546211	LOC100131303	A0A0U1RQF7	123 aa		13.7	□□□□□ -0.22
SKP2-208	ENST00000546211	CRYBA4	P53673	196 aa		13.7	□□□□□ -0.22
SKP2-208	ENST00000546211	NBEAL2	Q6ZNJ1	2754 aa		13.7	□□□□□ -0.22
SKP2-208	ENST00000546211	ERAS	Q7Z444	233 aa		13.69	□□□□□ -0.22
SKP2-208	ENST00000546211	C20orf203	Q8NBC4	194 aa		13.69	□□□□□ -0.22
SKP2-208	ENST00000546211	PRSS1	P07477	247 aa		13.68	□□□□□ -0.22
SKP2-208	ENST00000546211	RPL39	P62891	51 aa	Known RBP	13.68	□□□□□ -0.22
SKP2-208	ENST00000546211	S100A12	P80511	92 aa		13.68	□□□□□ -0.22
SKP2-208	ENST00000546211		Q6ZN92	141 aa		13.68	□□□□□ -0.22
SKP2-208	ENST00000546211		A0A0J9YWU9	116 aa		13.67	□□□□□ -0.22
SKP2-208	ENST00000546211	PAX4	O43316	350 aa		13.67	□□□□□ -0.22
SKP2-208	ENST00000546211		F5H768	121 aa		13.66	□□□□□ -0.22
SKP2-208	ENST00000546211	GYPE	P15421	78 aa		13.66	□□□□□ -0.22
SKP2-208	ENST00000546211	LINC01545	Q5VT33	79 aa		13.66	□□□□□ -0.22
SKP2-208	ENST00000546211	HTN3	P15516	51 aa		13.66	□□□□□ -0.22
SKP2-208	ENST00000546211	C12orf74	Q32Q52	190 aa		13.66	□□□□□ -0.22
SKP2-208	ENST00000546211	TEX43	Q6ZNM6	134 aa		13.66	□□□□□ -0.22
SKP2-208	ENST00000546211	ZMAT4	Q9H898	229 aa		13.66	□□□□□ -0.22
SKP2-208	ENST00000546211	NOTCH1	P46531	2555 aa		13.66	□□□□□ -0.22
SKP2-208	ENST00000546211	LGALS9C	Q6DKI2	356 aa		13.65	□□□□□ -0.22
SKP2-208	ENST00000546211	TMEM141	Q96I45	108 aa		13.65	□□□□□ -0.22
SKP2-208	ENST00000546211	TIMM17A	Q99595	171 aa		13.65	□□□□□ -0.22
SKP2-208	ENST00000546211	CHCHD7	Q9BUK0	85 aa		13.65	□□□□□ -0.22
SKP2-208	ENST00000546211	MGAM2	Q2M2H8	2515 aa		13.64	□□□□□ -0.23
SKP2-208	ENST00000546211	IGIP	A6NJ69	53 aa		13.64	□□□□□ -0.23
SKP2-208	ENST00000546211	LINC00694	P0DN24	101 aa		13.64	□□□□□ -0.23
SKP2-208	ENST00000546211	PMCHL2	Q9BQD1	86 aa		13.63	□□□□□ -0.23
SKP2-208	ENST00000546211	GTSF1L	Q9H1H1	148 aa		13.63	□□□□□ -0.23
SKP2-208	ENST00000546211		A0A0J9YY99	117 aa		13.62	□□□□□ -0.23
SKP2-208	ENST00000546211	ATOH7	Q8N100	152 aa		13.62	□□□□□ -0.23
SKP2-208	ENST00000546211	TRAV26-1	A0A087WT03	109 aa		13.62	□□□□□ -0.23
SKP2-208	ENST00000546211	TMEM97	Q5BJF2	176 aa		13.62	□□□□□ -0.23
SKP2-208	ENST00000546211	ATP6V0E2	Q8NHE4	81 aa		13.62	□□□□□ -0.23
SKP2-208	ENST00000546211	C11orf45	Q8TAV5	145 aa		13.62	□□□□□ -0.23
SKP2-208	ENST00000546211	BAALC	Q8WXS3	180 aa		13.62	□□□□□ -0.23
SKP2-208	ENST00000546211	VSIG2	Q96IQ7	327 aa		13.62	□□□□□ -0.23
SKP2-208	ENST00000546211	VAMP8	Q9BV40	100 aa		13.62	□□□□□ -0.23
SKP2-208	ENST00000546211	NBEAL1	Q6ZS30	2694 aa		13.61	□□□□□ -0.23
SKP2-208	ENST00000546211	IGKV2D-29	A0A075B6S2	120 aa	Predicted RBP	13.61	□□□□□ -0.23
SKP2-208	ENST00000546211	TRAV12-1	A0A0B4J245	112 aa		13.61	□□□□□ -0.23
SKP2-208	ENST00000546211	IGKV2-29	A2NJV5	120 aa	Predicted RBP	13.61	□□□□□ -0.23
SKP2-208	ENST00000546211	NTM-AS1	Q6ZSK4	140 aa		13.61	□□□□□ -0.23
SKP2-208	ENST00000546211	ODF1	Q14990	250 aa		13.6	□□□□□ -0.23
SKP2-208	ENST00000546211	PYGO1	Q9Y3Y4	419 aa		13.6	□□□□□ -0.23
SKP2-208	ENST00000546211	TRBV25-1	A0A075B6N4	114 aa		13.59	□□□□□ -0.23
SKP2-208	ENST00000546211		A0A087WX48	190 aa		13.59	□□□□□ -0.23
SKP2-208	ENST00000546211		Q6ZTC4	211 aa		13.59	□□□□□ -0.23
SKP2-208	ENST00000546211	SPANXA1	Q9NS26	97 aa		13.59	□□□□□ -0.23
SKP2-208	ENST00000546211	PAPPA-AS1	Q5QFB9	102 aa		13.58	□□□□□ -0.23
SKP2-208	ENST00000546211	B9D2	Q9BPU9	175 aa		13.58	□□□□□ -0.23
SKP2-208	ENST00000546211	TMEM243	Q9BU79	118 aa		13.58	□□□□□ -0.23
SKP2-208	ENST00000546211	NPS	P0C0P6	89 aa		13.58	□□□□□ -0.24
SKP2-208	ENST00000546211	NANOS2	P60321	138 aa	Known RBP	13.58	□□□□□ -0.24
SKP2-208	ENST00000546211	SMAGP	Q0VAQ4	97 aa		13.58	□□□□□ -0.24
SKP2-208	ENST00000546211	UBE2D4	Q9Y2X8	147 aa		13.58	□□□□□ -0.24
SKP2-208	ENST00000546211	PAM16	Q9Y3D7	125 aa		13.58	□□□□□ -0.24
SKP2-208	ENST00000546211	TRAV9-2	A0A087WT02	112 aa		13.57	□□□□□ -0.24
SKP2-208	ENST00000546211	TRBV6-8	A0A0A6YYG3	113 aa		13.57	□□□□□ -0.24
SKP2-208	ENST00000546211	UBE2L6	O14933	153 aa		13.57	□□□□□ -0.24
SKP2-208	ENST00000546211	PMVK	Q15126	192 aa		13.57	□□□□□ -0.24
SKP2-208	ENST00000546211	MRPL23	Q16540	153 aa	Known RBP	13.57	□□□□□ -0.24
SKP2-208	ENST00000546211	CHTOP	Q9Y3Y2	248 aa	Known RBP	13.57	□□□□□ -0.24
SKP2-208	ENST00000546211	ICOS	Q9Y6W8	199 aa		13.57	□□□□□ -0.24
SKP2-208	ENST00000546211	IGLV4-3	A0A075B6K6	122 aa		13.56	□□□□□ -0.24
SKP2-208	ENST00000546211	PRSS29P	A6NIE9	313 aa		13.56	□□□□□ -0.24
SKP2-208	ENST00000546211	TIMM21	Q9BVV7	248 aa		13.56	□□□□□ -0.24
SKP2-208	ENST00000546211	MRPL35	Q9NZE8	188 aa	Known RBP	13.56	□□□□□ -0.24
SKP2-208	ENST00000546211		A0A096LPF7	62 aa		13.55	□□□□□ -0.24
SKP2-208	ENST00000546211	HSBP1L1	C9JCN9	74 aa		13.55	□□□□□ -0.24
SKP2-208	ENST00000546211		F8VRH5	84 aa		13.55	□□□□□ -0.24
SKP2-208	ENST00000546211	DPM2	O94777	84 aa		13.55	□□□□□ -0.24
SKP2-208	ENST00000546211	DGAT2L7P	Q6IED9	249 aa		13.55	□□□□□ -0.24
SKP2-208	ENST00000546211	CEMP1	Q6PRD7	247 aa	Predicted RBP	13.55	□□□□□ -0.24
SKP2-208	ENST00000546211	SH2D6	Q7Z4S9	175 aa		13.55	□□□□□ -0.24
SKP2-208	ENST00000546211	ZNF664	Q8N3J9	261 aa		13.55	□□□□□ -0.24
SKP2-208	ENST00000546211	OPRPN	Q99935	248 aa	Predicted RBP	13.55	□□□□□ -0.24
SKP2-208	ENST00000546211		H7C423	109 aa		13.54	□□□□□ -0.24
SKP2-208	ENST00000546211	IGKC	P01834	107 aa		13.54	□□□□□ -0.24
SKP2-208	ENST00000546211	SPATA45	Q537H7	98 aa		13.54	□□□□□ -0.24
SKP2-208	ENST00000546211	VCX2	Q9H322	139 aa		13.54	□□□□□ -0.24
SKP2-208	ENST00000546211	CST9L	Q9H4G1	147 aa		13.54	□□□□□ -0.24
SKP2-208	ENST00000546211	FGF6	P10767	208 aa		13.54	□□□□□ -0.24
SKP2-208	ENST00000546211	PLN	P26678	52 aa		13.54	□□□□□ -0.24
SKP2-208	ENST00000546211		H3BNG1	76 aa		13.53	□□□□□ -0.24
SKP2-208	ENST00000546211	PKIA	P61925	76 aa		13.53	□□□□□ -0.24
SKP2-208	ENST00000546211	MAJIN	Q3KP22	176 aa		13.53	□□□□□ -0.24
SKP2-208	ENST00000546211	AMMECR1L	Q6DCA0	310 aa		13.53	□□□□□ -0.24
SKP2-208	ENST00000546211	MRPL52	Q86TS9	123 aa	Known RBP	13.53	□□□□□ -0.24
SKP2-208	ENST00000546211	DEFB131B	A0A096LNP1	70 aa		13.52	□□□□□ -0.25
SKP2-208	ENST00000546211	hDV102S1	A0JD36	115 aa		13.52	□□□□□ -0.25
SKP2-208	ENST00000546211	TSTD3	H0UI37	97 aa		13.52	□□□□□ -0.25

Retrieved 100 of 20,778 RNA–protein pairs in 39.3 ms